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Nature Protocols, ISSN 1754-2189, 07/2018, Volume 13, Issue 7, pp. 1632 - 1661
Journal Article
Molecular & cellular proteomics : MCP, ISSN 1535-9476, 06/2019, Volume 18, Issue 8, pp. 1630 - 1650
Aberrant phospho-signaling is a hallmark of cancer. We investigated kinase-substrate regulation of 33,239 phosphorylation sites (phosphosites) in 77 breast... 
Index Medicus
Journal Article
Cancer Research, ISSN 0008-5472, 05/2018, Volume 78, Issue 10, pp. 2732 - 2746
Journal Article
by Vasaikar, Suhas and Huang, Chen and Wang, Yi-Ting and Wang, Xiaojing and Wang, Yue and Petyuk, Vladislav A and Savage, Sara R and Wen, Bo and Dou, Yongchao and Zhang, Zhen and Zhang, Hui and Zhang, Bing and Zhang, Yun and Shi, Zhiao and Arshad, Osama A and Gritsenko, Marina A and Zimmerman, Lisa J and McDermott, Jason E and Clauss, Therese R and Moore, Ronald J and Zhao, Rui and Zhao, Yingming and Monroe, Matthew E and Chambers, Matthew C and Slebos, Robert J.C and Slebos, Robbert J.C and Lau, Ken S and Mo, Qianxing and Ding, Li and Ellis, Matthew and Ellis, Matthew J.C and Thiagarajan, Mathangi and Kinsinger, Christopher R and Rodriguez, Henry and Smith, Richard D and Rodland, Karin D and Liebler, Daniel C and Liu, Tao and Bavarva, Jasmin and Borucki, Melissa and Elburn, Kimberly and Hannick, Linda and Vatanian, Negin and Payne, Samuel H and Carr, Steven A and Clauser, Karl R and Gillette, Michael A and Kuhn, Eric and Mani, D.R and Cai, Shuang and Ketchum, Karen A and Thangudu, Ratna R and Whiteley, Gordon A and Paulovich, Amanda and Whiteaker, Jeff and Edward, Nathan J and Madhavan, Subha and McGarvey, Peter B and Chan, Daniel W and Shih, Ie-Ming and Zhu, Heng and Skates, Steven J and White, Forest M and Mertins, Philip and Pandey, Akhilesh and Boja, Emily and Hiltke, Tara and Mesri, Mehdi and Rivers, Robert C and Stein, Stephen E and Fenyo, David and Ruggles, Kelly and Levine, Douglas A and Oberti, Mauricio and Rudnick, Paul A and Snyder, Michael and Tabb, David L and Chen, Xian and Ransohoff, David F and Hoofnagle, Andrew and Sanders, Melinda E and Davies, Sherri R and Townsend, R. Reid and Watson, Mark and Clinical Proteomic Tumor Analysis and Clinical Proteomic Tumor Analysis Consortium
Cell, ISSN 0092-8674, 05/2019, Volume 177, Issue 4, pp. 1035 - 1049.e19
We performed the first proteogenomic study on a prospectively collected colon cancer cohort. Comparative proteomic and phosphoproteomic analysis of paired... 
RB1 | tumor antigen | proteomics | immune evasion | colon cancer | biomarkers | glycolysis | drug targets | SOX9 | proteogenomics | TANDEM MASS-SPECTRA | READ ALIGNMENT | DATABASE | HIGH-THROUGHPUT | COLORECTAL-CANCER | BIOCHEMISTRY & MOLECULAR BIOLOGY | IDENTIFICATION | TUMORS | SOFTWARE | SEQ | TOOL | CELL BIOLOGY | Proteins | Prevention | Antigens | Glucose metabolism | Medical colleges | Colon cancer | Analysis | Gastrointestinal diseases | T cells | Health aspects | Tumors | Cancer
Journal Article
Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology, ISSN 1055-9965, 06/2019, p. cebp.1322.2018
There is substantial variation in breast cancer survival rates, even among patients with similar clinical and genomic profiles. New biomarkers are needed to... 
Journal Article
Cancer research, ISSN 0008-5472, 5/2018, Volume 78, Issue 10, pp. 2732 - 2746
Activation of phosphoinositide 3-kinase (PI3K) signaling is frequently observed in triple-negative breast cancer (TNBC), yet PI3K inhibitors have shown limited... 
Journal Article
by Zhang, Bing and Zhang, Bing and Wang, Jing and Wang, Jing and Wang, Xiaojing and Wang, Xiaojing and Zhu, Jing and Zhu, Jing and Liu, Q and Liu, Qi and Shi, Zhiao and Shi, Zhiao and Chambers, Matthew C and Chambers, Matthew C and Zimmerman, Lisa J and Zimmerman, Lisa J and Shaddox, Kent F and Shaddox, Kent F and Kim, Sangtae and Kim, Sangtae and Davies, Sherri R and Davies, Sherri R and Wang, Sean and Wang, Sean and Wang, Pei and Wang, Pei and Kinsinger, Christopher R and Kinsinger, Christopher R and Rivers, Robert C and Rivers, Robert C and Rodriguez, Henry and Rodriguez, Henry and Townsend, R. Reid and Townsend, R Reid and Ellis, Matthew J. C and Ellis, Matthew J C and Carr, Steven A and Carr, Steven A and Tabb, David L and Tabb, David L and Coffey, Robert J and Coffey, Robert J and Slebos, Robbert J C and Slebos, Robbert J. C and Liebler, Daniel C and Liebler, Daniel C and NCI CPTAC, CPTAC and Gillette, Michael A and Klauser, Karl R and Kuhn, Eric and Mani, D.R and Mertins, Philipp and Ketchum, Karen A and Paulovich, Amanda G and Whiteaker, Jeffrey R and Edwards, Nathan J and McGarvey, Peter B and Madhavan, Subha and Chan, Daniel and Pandey, Akhilesh and Shih, Ie-Ming and Zhang, Hui and Zhang, Zhen and Zhu, Heng and Whiteley, Gordon A and Skates, Steven J and White, Forest M and Levine, Douglas A and Boja, Emily S and Hiltke, Tara and Mesri, Mehdi and Shaw, Kenna M and Stein, Stephen E and Fenyo, David and Liu, Tao and McDermott, Jason E and Payne, Samuel H and Rodland, Karin D and Smith, Richard D and Rudnick, Paul and Snyder, Michael and Zhao, Yingming and Chen, Xian and Ransohoff, David F and Hoofnagle, Andrew N and Sanders, Melinda E and Wang, Yue and Ding, Li and NCI CPTAC and the NCI CPTAC
Nature, ISSN 0028-0836, 2014, Volume 513, Issue 7518, pp. 382 - 387
Journal Article
Nature, ISSN 0028-0836, 05/2016, Volume 534, Issue 7605, pp. 55 - 62
Somatic mutations have been extensively characterized in breast cancer, but the effects of these genetic alterations on the proteomic landscape remain poorly... 
PATHWAYS | HETEROGENEITY | PIK3CA MUTATIONS | PHOSPHORYLATION | MULTIDISCIPLINARY SCIENCES | GENES | BIOLOGY | RECEPTOR | EXPRESSION | SIGNATURE | REVEALS | Protein Kinases - metabolism | Focal Adhesion Kinase 1 - genetics | Receptor, Epidermal Growth Factor - genetics | Protein Kinases - genetics | Cyclin-Dependent Kinases - metabolism | Receptor, ErbB-2 - genetics | Receptors, G-Protein-Coupled - metabolism | Genomics | Humans | Gene Expression Regulation, Neoplastic | Receptor, ErbB-2 - metabolism | Phosphoproteins - metabolism | Receptor-Interacting Protein Serine-Threonine Kinase 2 - genetics | Tumor Suppressor Protein p53 - genetics | Breast Neoplasms - metabolism | Receptor-Interacting Protein Serine-Threonine Kinase 2 - metabolism | Breast Neoplasms - enzymology | Receptor, Epidermal Growth Factor - metabolism | Phosphoproteins - analysis | Mass Spectrometry | src-Family Kinases - metabolism | Female | Cyclin-Dependent Kinases - genetics | Focal Adhesion Kinase 1 - metabolism | Chromosomes, Human, Pair 5 - genetics | Breast Neoplasms - classification | Chromosome Deletion | p21-Activated Kinases - genetics | Signal Transduction | Molecular Sequence Annotation | Calcium-Binding Proteins - deficiency | Phosphoproteins - genetics | Mutation - genetics | S-Phase Kinase-Associated Proteins - metabolism | p21-Activated Kinases - metabolism | Phosphatidylinositol 3-Kinases - genetics | Breast Neoplasms - genetics | Class I Phosphatidylinositol 3-Kinases | Proteomics | S-Phase Kinase-Associated Proteins - genetics | Receptors, G-Protein-Coupled - genetics | src-Family Kinases - genetics | Calcium-Binding Proteins - genetics | Breast cancer | Genetic aspects | Research | Oncology, Experimental | Cancer | Physiological aspects | Methods | Mutation (Biology) | Proteins | Gene amplification | Peptides | Protein expression | Genomes | Mutation | Kinases | Deoxyribonucleic acid--DNA | Tumors | Index Medicus
Journal Article
Cancer Research, ISSN 0008-5472, 08/2015, Volume 75, Issue 15 Supplement, pp. 1999 - 1999
Journal Article
Molecular and Cellular Proteomics, ISSN 1535-9476, 02/2016, Volume 15, Issue 2, pp. 740 - 751
Journal Article
Cell Reports, ISSN 2211-1247, 09/2013, Volume 4, Issue 6, pp. 1116 - 1130
Journal Article