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1. Full Text The "most wanted" taxa from the human microbiome for whole genome sequencing
by Fodor, Anthony A and DeSantis, Todd Z and Wylie, Kristine M and Badger, Jonathan H and Ye, Yuzhen and Hepburn, Theresa and Hu, Ping and Sodergren, Erica and Liolios, Konstantinos and Huot-Creasy, Heather and Birren, Bruce W and Earl, Ashlee M
PLoS ONE, ISSN 1932-6203, 07/2012, Volume 7, Issue 7, p. e41294
The goal of the Human Microbiome Project (HMP) is to generate a comprehensive catalog of human-associated microorganisms including reference genomes... 
Genes, Bacterial | Metagenome - genetics | Humans | Bacteria - classification | RNA, Bacterial - genetics | RNA, Ribosomal, 16S - genetics | Female | Male | Bacteria - genetics | Genes, rRNA - genetics | Sequence Analysis, DNA - methods | Cohort Studies | Genomes | Nucleotide sequencing | RNA | Genomics | DNA sequencing
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2. Full Text Changes in the microbial community structure of bacteria, archaea and fungi in response to elevated CO2 and warming in an Australian native grassland soil
by Hayden, Helen L and Mele, Pauline M and Bougoure, Damian S and Allan, Claire Y and Norng, Sorn and Piceno, Yvette M and Brodie, Eoin L and DeSantis, Todd Z and Andersen, Gary L and Williams, Amity L and Hovenden, Mark J
Environmental Microbiology, ISSN 1462-2912, 12/2012, Volume 14, Issue 12, pp. 3081 - 3096
Summary The microbial community structure of bacteria, archaea and fungi is described in an Australian native grassland soil after more than 5 years exposure... 
ANALYSIS REVEALS | ATMOSPHERIC CO2 | PCR PRIMERS | BIOMASS | CLIMATE-CHANGE | MICROBIOLOGY | DIVERSITY | RICH TEMPERATE GRASSLAND | SEED MASS | FLOWERING PHENOLOGY | CARBON-DIOXIDE
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3. Full Text Long-term sustainability of a high-energy, low-diweniff crystal-biome
by Lin, Li-Hung and Wang, Pei-Ling and Rumble, Douglas and Lippmann-Pipke, Johanna and Boice, Erik and Pratt, Lisa M and Lollar, Barbara Sherwood and Brodie, Eoin L and Hazen, Terry C and Andersen, Gary L and DeSantis, Todd Z and Moser, Duane P and Kershaw, Dave and Onstott, T.C
Science, ISSN 0036-8075, 10/2006, Volume 314, Issue 5798, pp. 479 - 482
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4. Full Text Mo1807 Common Pharmaceuticals Shift in Gut Microbiome Composition
by Iwai, Shoko and Han, Andrew and Kuczynski, Justin and McMurdie, Paul J and Steger, Rachel and DiStefano, Peter S and Mahmood, Nadir and DeSantis, Todd Z and Dabbagh, Karim
Gastroenterology, ISSN 0016-5085, 2015, Volume 148, Issue 4, pp. S-716 - S-716
Gastroenterology and Hepatology
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5. Full Text Structure, function and diversity of the healthy human microbiome
by Huttenhower, Curtis and Gevers, Dirk and Knight, Rob and Abubucker, Sahar and Badger, Jonathan H and Chinwalla, Asif T and Creasy, Heather H and Earl, Ashlee M and Fitzgerald, Michael G and Fulton, Robert S and Giglio, Michelle G and Hallsworth-Pepin, Kymberlie and Lobos, Elizabeth A and Madupu, Ramana and Magrini, Vincent and Martin, John C and Mitreva, Makedonka and Muzny, Donna M and Sodergren, Erica J and Versalovic, James and Wollam, Aye M and Worley, Kim C and Wortman, Jennifer R and Young, Sarah K and Zeng, Qiandong and Aagaard, Kjersti M and Abolude, Olukemi O and Allen-Vercoe, Emma and Alm, Eric J and Alvarado, Lucia and Andersen, Gary L and Anderson, Scott and Appelbaum, Elizabeth and Arachchi, Harindra M and Armitage, Gary and Arze, Cesar A and Ayvaz, Tulin and Baker, Carl C and Begg, Lisa and Belachew, Tsegahiwot and Bhonagiri, Veena and Bihan, Monika and Blaser, Martin J and Bloom, Toby and Bonazzi, Vivien and Paul Brooks, J and Buck, Gregory A and Buhay, Christian J and Busam, Dana A and Campbell, Joseph L and Canon, Shane R and Cantarel, Brandi L and Chain, Patrick S. G and Chen, I-Min A and Chen, Lei and Chhibba, Shaila and Chu, Ken and Ciulla, Dawn M and Clemente, Jose C and Clifton, Sandra W and Conlan, Sean and Crabtree, Jonathan and Cutting, Mary A and Davidovics, Noam J and Davis, Catherine C and Desantis, Todd Z and Deal, Carolyn and Delehaunty, Kimberley D and Dewhirst, Floyd E and Deych, Elena and Ding, Yan and Dooling, David J and Dugan, Shannon P and Michael Dunne, Wm and Scott Durkin, A and Edgar, Robert C and Erlich, Rachel L and Farmer, Candace N and Farrell, Ruth M and Faust, Karoline and Feldgarden, Michael and Felix, Victor M and Fisher, Sheila and Fodor, Anthony A and Forney, Larry J and Foster, Leslie and Di Francesco, Valentina and Friedman, Jonathan and Friedrich, Dennis C and Fronick, Catrina C and Fulton, Lucinda L and Gao, Hongyu and Garcia, Nathalia and Giannoukos, Georgia and Giblin, Christina and Giovanni, Maria Y and Goldberg, Jonathan M and Goll, Johannes and Gonzalez, Antonio and Griggs, Allison and ... and Human Microbiome Project Consortiu and Human Microbiome Project Consortium and The Human Microbiome Project Consortium and Joint Genome Institute (JGI)
Nature, ISSN 0028-0836, 06/2012, Volume 486, Issue 7402, pp. 207 - 214
Studies of the human microbiome have revealed that even healthy individuals differ remarkably in the microbes that occupy habitats such as the gut, skin and... 
IDENTIFICATION | BACTERIA | MULTIDISCIPLINARY SCIENCES | Metagenomics | Health | Humans | Male | Biodiversity | Bacteria - genetics | Young Adult | Phenotype | Ecosystem | Adolescent | Bacteria - classification | RNA, Ribosomal, 16S - genetics | Adult | Female | Metabolic Networks and Pathways - physiology | Metagenome | Microbiota (Symbiotic organisms) | Research | Biological diversity | Microbiology | Disease | Habitats | Taxonomy | Data processing | Skin | Life sciences | Genomes
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6. Full Text Comparing bacterial community composition of healthy and dark spot-affected Siderastrea sidereain Florida and the Caribbean
by Kellogg, Christina A and Piceno, Yvette M and Tom, Lauren M and DeSantis, Todd Z and Gray, Michael A and Andersen, Gary L
PLoS ONE, 10/2014, Volume 9, Issue 10
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7. Full Text An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
by McDonald, Daniel and Price, Morgan N and Goodrich, Julia and Nawrocki, Eric P and Desantis, Todd Z and Probst, Alexander and Andersen, Gary L and Knight, Rob and Hugenholtz, Philip
ISME Journal, ISSN 1751-7362, 03/2012, Volume 6, Issue 3, pp. 610 - 618
Reference phylogenies are crucial for providing a taxonomic framework for interpretation of marker gene and metagenomic surveys, which continue to reveal novel... 
phylogenetics | evolution | taxonomy | SEQUENCE DATA | MICROBIOLOGY | INFERENCE | ALIGNMENTS | HUMAN MICROBIOME PROJECT | ARB | DATABASE | ASSIGNMENT | ECOLOGY | DIVERSITY | RIBOSOMAL-RNA GENE | TOOL | Metagenomics | Bacteria - classification | Databases, Genetic | RNA, Ribosomal, 16S - genetics | Classification - methods | Archaea - genetics | Software | Phylogeny | Archaea - classification | Bacteria - genetics | Databases | rRNA 16S | software | Taxonomy | Classification | Evolution | Computer programs | Original
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8. Full Text Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers
by Liu, Zongzhi and DeSantis, Todd Z and Andersen, Gary L and Knight, Rob
Nucleic Acids Research, ISSN 0305-1048, 10/2008, Volume 36, Issue 18, pp. e120 - e120
The recent introduction of massively parallel pyrosequencers allows rapid, inexpensive analysis of microbial community composition using 16S ribosomal RNA... 
OBESITY | MICROBIAL COMMUNITIES | DATABASE | DNA FRAGMENTS | GUT MICROBIOME | BIOCHEMISTRY & MOLECULAR BIOLOGY | ENVIRONMENT | BIOSPHERE | PHYLOGENETIC CLASSIFICATION | ECOLOGY | DIVERSITY | Reproducibility of Results | Humans | Phylogeny | Bacteria - genetics | Sequence Analysis, DNA | Sequence Alignment | Algorithms | Animals | Bacteria - classification | RNA, Ribosomal, 16S - genetics | Classification - methods | Mice | Metagenome | Methods Online
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9. Full Text Chronic kidney disease alters intestinal microbial flora
by Vaziri, Nosratola D and Wong, Jakk and Pahl, Madeleine and Piceno, Yvette M and Yuan, Jun and DeSantis, Todd Z and Ni, Zhenmin and Nguyen, Tien-Hung and Andersen, Gary L
Kidney International, ISSN 0085-2538, 02/2013, Volume 83, Issue 2, pp. 308 - 315
The population of microbes (microbiome) in the intestine is a symbiotic ecosystem conferring trophic and protective functions. Since the biochemical... 
ESRD | uremia | gut microbiome | diet | inflammation | BACTERIA | GASTROINTESTINAL-TRACT | FECAL MICROBIOTA | GUT | RATS | HOST | SIZED POLYETHYLENE-GLYCOLS | UROLOGY & NEPHROLOGY | CHRONIC-RENAL-FAILURE | Humans | Middle Aged | Rats | Male | Rats, Sprague-Dawley | Feces - microbiology | Uremia - microbiology | Bacteria - isolation & purification | Animals | Intestines - microbiology | Adult | Female | Aged | Kidney Failure, Chronic - microbiology
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10. Full Text A framework for human microbiome research
by Methé, Barbara A and Nelson, Karen E and Pop, Mihai and Creasy, Heather H and Giglio, Michelle G and Huttenhower, Curtis and Gevers, Dirk and Petrosino, Joseph F and Abubucker, Sahar and Badger, Jonathan H and Chinwalla, Asif T and Earl, Ashlee M and Fitzgerald, Michael G and Fulton, Robert S and Hallsworth-Pepin, Kymberlie and Lobos, Elizabeth A and Madupu, Ramana and Magrini, Vincent and Martin, John C and Mitreva, Makedonka and Muzny, Donna M and Sodergren, Erica J and Versalovic, James and Wollam, Aye M and Worley, Kim C and Wortman, Jennifer R and Young, Sarah K and Zeng, Qiandong and Aagaard, Kjersti M and Abolude, Olukemi O and Allen-Vercoe, Emma and Alm, Eric J and Alvarado, Lucia and Andersen, Gary L and Anderson, Scott and Appelbaum, Elizabeth and Arachchi, Harindra M and Armitage, Gary and Arze, Cesar A and Ayvaz, Tulin and Baker, Carl C and Begg, Lisa and Belachew, Tsegahiwot and Bhonagiri, Veena and Bihan, Monika and Blaser, Martin J and Bloom, Toby and Bonazzi, Vivien R and Brooks, Paul and Buck, Gregory A and Buhay, Christian J and Busam, Dana A and Campbell, Joseph L and Canon, Shane R and Cantarel, Brandi L and Chain, Patrick S and Chen, I-Min A and Chen, Lei and Chhibba, Shaila and Chu, Ken and Ciulla, Dawn M and Clemente, Jose C and Clifton, Sandra W and Conlan, Sean and Crabtree, Jonathan and Cutting, Mary A and Davidovics, Noam J and Davis, Catherine C and Desantis, Todd Z and Deal, Carolyn and Delehaunty, Kimberley D and Dewhirst, Floyd E and Deych, Elena and Ding, Yan and Dooling, David J and Dugan, Shannon P and Michael Dunne, W and Scott Durkin, A and Edgar, Robert C and Erlich, Rachel L and Farmer, Candace N and Farrell, Ruth M and Faust, Karoline and Feldgarden, Michael and Felix, Victor M and Fisher, Sheila and Fodor, Anthony A and Forney, Larry and Foster, Leslie and Di Francesco, Valentina and Friedman, Jonathan and Friedrich, Dennis C and Fronick, Catrina C and Fulton, Lucinda L and Gao, Hongyu and Garcia, Nathalia and Giannoukos, Georgia and Giblin, Christina and Giovanni, Maria Y and Goldberg, Jonathan M and ... and Human Microbiome Project Consortiu and Human Microbiome Project Consortium and The Human Microbiome Project Consortium and Joint Genome Institute (JGI)
Nature, ISSN 0028-0836, 06/2012, Volume 486, Issue 7402, pp. 215 - 221
A variety of microbial communities and their genes (the microbiome) exist throughout the human body, with fundamental roles in human health and disease. The... 
MULTIDISCIPLINARY SCIENCES | CATALOG | Young Adult | Reference Standards | Humans | Adolescent | Metagenomics - methods | RNA, Ribosomal, 16S - genetics | Adult | Female | Male | Statistics as Topic | Bacteria - genetics | Metagenome | Genetic research | Microbiological research | Genomes | Research | Microbiota (Symbiotic organisms) | Studies | Medicine | Microbiology | Publications | Taxonomy | Genomics | Data processing | Manuscripts
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