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Journal Article
PLoS ONE, ISSN 1932-6203, 2010, Volume 5, Issue 8, pp. e12339 - e12339
Journal Article
by Birney, Ewan and Stamatoyannopoulos, John A and Dutta, Anindya and Guigó, Roderic and Gingeras, Thomas R and Margulies, Elliott H and Weng, Zhiping and Snyder, Michael and Dermitzakis, Emmanouil T and Thurman, Robert E and Kuehn, Michael S and Taylor, Christopher M and Neph, Shane and Koch, Christoph M and Asthana, Saurabh and Malhotra, Ankit and Adzhubei, Ivan and Greenbaum, Jason A and Andrews, Robert M and Flicek, Paul and Boyle, Patrick J and Cao, Hua and Carter, Nigel P and Clelland, Gayle K and Davis, Sean and Day, Nathan and Dhami, Pawandeep and Dillon, Shane C and Dorschner, Michael O and Fiegler, Heike and Giresi, Paul G and Goldy, Jeff and Hawrylycz, Michael and Haydock, Andrew and Humbert, Richard and James, Keith D and Johnson, Brett E and Johnson, Ericka M and Frum, Tristan T and Rosenzweig, Elizabeth R and Karnani, Neerja and Lee, Kirsten and Lefebvre, Gregory C and Navas, Patrick A and Neri, Fidencio and Parker, Stephen C. J and Sabo, Peter J and Sandstrom, Richard and Shafer, Anthony and Vetrie, David and Weaver, Molly and Wilcox, Sarah and Yu, Man and Collins, Francis S and Dekker, Job and Lieb, Jason D and Tullius, Thomas D and Crawford, Gregory E and Sunyaev, Shamil and Noble, William S and Dunham, Ian and Denoeud, France and Reymond, Alexandre and Kapranov, Philipp and Rozowsky, Joel and Zheng, Deyou and Castelo, Robert and Frankish, Adam and Harrow, Jennifer and Ghosh, Srinka and Sandelin, Albin and Hofacker, Ivo L and Baertsch, Robert and Keefe, Damian and Dike, Sujit and Cheng, Jill and Hirsch, Heather A and Sekinger, Edward A and Lagarde, Julien and Abril, Josep F and Shahab, Atif and Flamm, Christoph and Fried, Claudia and Hackermüller, Jörg and Hertel, Jana and Lindemeyer, Manja and Missal, Kristin and Tanzer, Andrea and Washietl, Stefan and Korbel, Jan and Emanuelsson, Olof and Pedersen, Jakob S and Holroyd, Nancy and Taylor, Ruth and Swarbreck, David and Matthews, Nicholas and Dickson, Mark C and Thomas, Daryl J and Weirauch, Matthew T and Gilbert, James and ... and ENCODE Project Consortium and Baylor College of Medicine Human Genome Sequencing Center and Washington University Genome Sequencing Center and Children's Hospital Oakland Research Institute and NISC Comparative Sequencing Program and Broad Institute and The ENCODE Project Consortium
Nature, ISSN 0028-0836, 06/2007, Volume 447, Issue 7146, pp. 799 - 816
Journal Article
GigaScience, ISSN 2047-217X, 07/2012, Volume 16, Issue 1, pp. 3 - 3
Background: Methylated DNA immunoprecipitation (MeDIP) is a popular enrichment based method and can be combined with sequencing (termed MeDIP-seq) to... 
Epigenomics | MeDUSA | MeDIP-seq | DNA methylation | Epigenetics | Methylome | Computational pipeline | CHIP-SEQ | STEM-CELLS | WIDE DNA METHYLATION | MULTIDISCIPLINARY SCIENCES | PRC2 | EXCISION | DIFFERENTIAL EXPRESSION ANALYSIS | EZH1
Journal Article
Human Molecular Genetics, ISSN 0964-6906, 11/2005, Volume 14, Issue 22, pp. 3435 - 3447
We present a detailed in vivo characterization of hepatocyte transcriptional regulation in HepG2 cells, using chromatin immunoprecipitation and detection on... 
ELEMENTS | ACTIVATION | UPSTREAM STIMULATORY FACTOR | BIOCHEMISTRY & MOLECULAR BIOLOGY | IN-VIVO | LIVER | GENETICS & HEREDITY | GENE-EXPRESSION | HISTONE MODIFICATIONS | PROMOTER | PROTEINS | HEPATOCYTE NUCLEAR FACTOR-4-ALPHA | Consensus Sequence | Chromatin - metabolism | Promoter Regions, Genetic | Oligonucleotide Array Sequence Analysis - methods | Humans | Binding Sites - genetics | Hepatocytes - metabolism | Transcription Factors - genetics | Hepatocyte Nuclear Factor 4 - physiology | Sequence Analysis, DNA | Transcription Factors - metabolism | Hepatocyte Nuclear Factor 3-beta - physiology | Metabolic Diseases - metabolism | Upstream Stimulatory Factors - metabolism | Base Pairing - genetics | Cell Line, Tumor | Chromatin Immunoprecipitation - methods | Histones - metabolism | Genome, Human | Index Medicus | Promoter Regions (Genetics) | Chromatin Immunoprecipitation/methods | Transcription Factors/genetics/metabolism | Medical and Health Sciences | Chromatin/metabolism | Medicin och hälsovetenskap | Upstream Stimulatory Factors/metabolism | Genome; Human | Binding Sites/genetics | Histones/metabolism | Hepatocyte Nuclear Factor 3-beta/physiology | Sequence Analysis; DNA | Oligonucleotide Array Sequence Analysis/methods | Hepatocytes/metabolism | Base Pairing/genetics | Cell Line; Tumor | Research Support; N.I.H.; Extramural | Metabolic Diseases/metabolism | Hepatocyte Nuclear Factor 4/physiology | Research Support; Non-U.S. Gov't
Journal Article
by Hernandez, Judith and Sudbrak, Ralf and Steffen, David and Davies, Joy and Shen, Hua and Nyakatura, Gerald and Barker, Gary E and Beasley, Oliver and Warry, Georgina L and Hillier, LaDeana W and de Jong, Pieter J and Willey, David L and Faulkner, Louisa and McMurray, Amanda and Ding, Yan and Bonnin, David and Meindl, Alfons and Burford, Deborah and Pasternak, Shiran and Schueler, Mary G and Yen, Jennifer and Laird, Gavin K and Pandian, Richard and Bye, Jackie M and Meidl, Patrick and Swann, R. Mark and Wei, Xuehong and Lloyd, David M and Williams, Leanne and Bagguley, Claire L and Bridgeman, Anne M and Platzer, Matthias and Morris, Sidney and Dhami, Pawandeep and Mullikin, James C and Lloyd, Christine and Taudien, Stefan and Gwilliam, Rhian and Williams, Gabrielle and Huckle, Elizabeth J and Coulson, Alan and Beare, David M and Griffiths, Coline and Johnson, David and Chen, Rui and Wall, Melanie and Gill, Rachel and Rhodes, Susan and Lovell, Jamieson D and Burrows, Christine and Storey, Roy and Perez, Lesette and Gregory, Simon G and Fulton, Robert S and Howe, Kevin L and Durbin, K. James and Whitehead, Siobhan L and Shaw-Smith, Charles and Sotheran, Elizabeth C and Babbage, Anne K and Jacob, Leni and Parker, David and Sulston, John E and Connor, Richard E and Davis, Clay and Gribble, Susan and Nelson, David L and Dutta, Ireena and Gilbert, James and Heath, Paul D and Hennig, Steffen and Burton, John and Nordsiek, Gabriele and Villasana, Donna and Gu, Yanghong and Khan, Ziad and Tracey, Alan and Rogers, Jane and Scherer, Steven and Maheshwari, Manjula and Bruford, Elspeth A and Barlow, Karen F and Williamson, Helen and Draper, Heather and Dugan-Rocha, Shannon and Hunt, Paul J and Zorilla, Sara and Scott, Carol E and Loulseged, Hermela and Matthews, Lucy H and Richards, Stephen and Ballabio, Andrea and Warren, James and Wilkinson, Jane E and Patel, Dina and Errington, Helen and Knights, Andrew J and Ashurst, Jennifer L and Chen, Guan and Hart, Elizabeth A and ...
Nature, ISSN 0028-0836, 03/2005, Volume 434, Issue 7031, pp. 325 - 337
Journal Article
PLoS ONE, ISSN 1932-6203, 02/2010, Volume 5, Issue 2, pp. e9059 - e9059
The SCL (TAL1) transcription factor is a critical regulator of haematopoiesis and its expression is tightly controlled by multiple cis-acting regulatory... 
STEM-CELL ENHANCER | RNA-POLYMERASE-II | TRANSCRIPTION FACTOR-BINDING | GENE | NONCODING RNAS | PROTEIN CTCF | BIOLOGY | HYPERSENSITIVE SITES | HISTONE MODIFICATIONS | HEMATOPOIETIC PROGENITORS | CHROMATIN OCCUPANCY | Basic Helix-Loop-Helix Transcription Factors - genetics | Oligonucleotide Array Sequence Analysis | Humans | Gene Expression Regulation | Proto-Oncogene Proteins - genetics | Binding Sites - genetics | Promoter Regions, Genetic - genetics | Regulatory Sequences, Nucleic Acid - genetics | Transcription Factors - metabolism | Chromatin Immunoprecipitation | U937 Cells | CCCTC-Binding Factor | K562 Cells | Cell Line, Tumor | HL-60 Cells | Protein Binding | Lysine - metabolism | Acetylation | Histones - metabolism | Methylation | Repressor Proteins - metabolism | T-Cell Acute Lymphocytic Leukemia Protein 1 | Cluster Analysis | Chromatin | Genetic transcription | DNA binding proteins | Analysis | Genes | Protein binding | Medical research | Transcription factors | Laboratories | Leukemia | Biology | Regulatory sequences | Gene expression | Loci | Proteins | Scl gene | Pathology | GATA-1 protein | DNA microarrays | Human performance | Cell lines | Stem cells | Gene loci | Tiling | Bioinformatics | Informatics | Regulatory proteins | Deoxyribonucleic acid--DNA | Cancer | Index Medicus | Deoxyribonucleic acid | DNA
Journal Article
Journal Article