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ISSN 0027-8424, 2018
Molecular dynamics (MD) simulation has become a powerful tool for characterizing at an atomic level of detail the conformational changes undergone by proteins.... 
RNA-protein interactions | Molecular dynamics | Biochemistry | Biophysics | Nucleic acids
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 10/2004, Volume 101, Issue 43, pp. 15275 - 15278
Journal Article
Journal of Computational Chemistry, ISSN 0192-8651, 01/2011, Volume 32, Issue 1, pp. 170 - 173
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 02/2018, Volume 115, Issue 7, pp. E1346 - E1355
Journal Article
Journal of the American Chemical Society, ISSN 0002-7863, 03/2017, Volume 139, Issue 8, pp. 3134 - 3144
We describe a framework for designing the sequences of multiple nucleic acid strands intended to hybridize in solution via a prescribed reaction pathway.... 
Chemical reactions | Usage | Synthetic biology | Nucleic acids | Research | Index Medicus
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 01/2013, Volume 110, Issue 1, p. 384
Journal Article
Journal of Computational Chemistry, ISSN 0192-8651, 10/2003, Volume 24, Issue 13, pp. 1664 - 1677
Nucleic acid secondary structure models usually exclude pseudoknots due to the difficulty of treating these nonnested structures efficiently in structure... 
secondary structure | pseudoknots | RNA | DNA | partition function | Pseudoknots | Partition function | Secondary structure | DESIGN | SEQUENCES | RNA STRUCTURE PREDICTION | INFORMATION | PSEUDOBASE | PARAMETERS | CHEMISTRY, MULTIDISCIPLINARY | Thermodynamics | DNA - chemistry | Algorithms | Computational Biology | Models, Molecular | Nucleic Acid Conformation | RNA - chemistry | Index Medicus
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 9/2010, Volume 107, Issue 39, pp. 16777 - 16782
Journal Article
Nature Nanotechnology, ISSN 1748-3387, 2007, Volume 2, Issue 8, pp. 490 - 494
Journal Article
Journal of Computational Chemistry, ISSN 0192-8651, 07/2004, Volume 25, Issue 10, pp. 1295 - 1304
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 2004, Volume 32, Issue 4, pp. 1392 - 1403
Journal Article
Proceedings of the National Academy of Sciences, ISSN 0027-8424, 01/2013, Volume 110, Issue 1, pp. 384 - 384
Journal Article
Journal of Chemical Theory and Computation, ISSN 1549-9618, 01/2012, Volume 8, Issue 1, pp. 162 - 171
Molecular simulations aim to sample all of the thermodynamically important states; when the sampling is inadequate, inaccuracy follows. A widely used technique... 
Journal Article
by Torchia, Jonathon, MSc and Picard, Daniel, MSc and Lafay-Cousin, Lucie, MD and Hawkins, Cynthia E, PhD and Kim, Seung-Ki, MD and Letourneau, Louis, BSc and Ra, Young-Shin, Prof and Ho, King Ching, MSc and Chan, Tiffany Sin Yu, PhD and Sin-Chan, Patrick, MSc and Dunham, Christopher P, MD and Yip, Stephen, FRCPC and Ng, Ho-keung, MD and Lu, Jian-Qiang, FRCPC and Albrecht, Steffen, MD and Pimentel, José, PhD and Chan, Jennifer A, MD and Somers, Gino R, MBBS and Zielenska, Maria, PhD and Faria, Claudia C, PhD and Roque, Lucia, PhD and Baskin, Berivan, PhD and Birks, Diane, MS and Foreman, Nick, Prof and Strother, Douglas, MD and Klekner, Almos, PhD and Garami, Miklos, PhD and Hauser, Peter, PhD and Hortobágyi, Tibor, PhD and Bognár, Laszló, PhD and Wilson, Beverly, MD and Hukin, Juliette, FRCPC and Carret, Anne-Sophie, MD and Van Meter, Timothy E, PhD and Nakamura, Hideo, MD and Toledano, Helen, MD and Fried, Iris, MD and Fults, Daniel, MD and Wataya, Takafumi, PhD and Fryer, Chris, FRCPC and Eisenstat, David D, MD and Scheineman, Katrin, Prof and Johnston, Donna, MD and Michaud, Jean, MD and Zelcer, Shayna, MD and Hammond, Robert, MD and Ramsay, David A, MBChB and Fleming, Adam J, MD and Lulla, Rishi R, MD and Fangusaro, Jason R, MD and Sirachainan, Nongnuch, MD and Larbcharoensub, Noppadol, MD and Hongeng, Suradej, MD and Barakzai, Muhammad Abrar, MD and Montpetit, Alexandre, PhD and Stephens, Derek, MSc and Grundy, Richard G, FRCPCH and Schüller, Ulrich, MD and Nicolaides, Theodore, MD and Tihan, Tarik, PhD and Phillips, Joanna, PhD and Taylor, Michael D, PhD and Rutka, James T, MD and Dirks, Peter, PhD and Bader, Gary D, PhD and Warmuth-Metz, Monika, Prof and Rutkowski, Stefan, Prof and Pietsch, Torsten, Prof and Judkins, Alexander R, MD and Jabado, Nada, PhD and Bouffet, Eric, Prof and Huang, Annie, Dr and Medicinska fakulteten and Medicinska och farmaceutiska vetenskapsområdet and Institutionen för immunologi, genetik och patologi and Uppsala universitet and Medicinsk genetik och genomik
Lancet Oncology, The, ISSN 1470-2045, 2015, Volume 16, Issue 5, pp. 569 - 582
Journal Article
Biophysical Journal, ISSN 0006-3495, 2011, Volume 100, Issue 3, pp. 522a - 522a
Journal Article
by Nerem, Robert M and Winkler, Jürgen and Cancedda, Ranieri and Tasso, Roberta and Tortelli, Federico and Mastrogiacomo, Maddalena and Schäfer, Karl-Herbert and Hoerstrup, Philipp and Stallkamp, Jan and Brode, Tobias and Szyrach, Mara and Enderle, Markus and Fischer, Klaus and Aicher, Wilhelm K and Aicher, Wilhelm K and Christ, Bruno and Dvorankova, Barbora and Szabo, Pavol and Lacina, Lukas and Kaltner, Herbert and Andre, Sabine and Gabius, Hans-Joachim and Smetana, Karel and Hammer, Timo and Müller, Marina and Höfer, Dirk and Boccaccini, Aldo R and Lendlein, Andreas and Mironov, Vladimir and Fano, Cornelia and Akra, Bassil and Dauner, Martin and Planck, Heinrich and Just, Lothar and HauÕmann, Susanne and Mack, Andreas and Rohde, Manfred and Schmidt, Timo and Kommareddy, Krishna Prasad and Lange, Claudia and Cui, Jing and Boergermann, Jan and Manjubala, Inderchand and Rumpler, Monika and Dunlop, John WC and Karl, Kratz and Lendlein, Andreas and Knaus, Petra and Fratzl, Peter and Fratzl, Peter and Schröder, Timm and Massberg, Steffen and Lee-Thedieck, Cornelia and Lee-Thedieck, Cornelia and Lee-Thedieck, Cornelia and Rauch, Nicole and Fiammengo, Roberto and Klein, Gerd and Spatz, Joachim and Spatz, Joachim and Spatz, Joachim and König, Julia and Huppertz, Berthold and Dohr, Gottfried and Dohr, Gottfried and Desoye, Gernot and Parolini, Ornella and Lang, Ingrid and Dominici, Massimo and Rasini, Valeria and Veronesi, Elena and Piccinno, Serena and Bussolari, Rita and Conte, Pierfranco and Paolucci, Paolo and Horwitz, Edwin and MacLellan, W. Robb and Saarikoski, Pamela and Sierra, Maria and Magnusson, Mattias and Sasidharan, Rajkumar and Zack, Jerome and Galic, Zoran and Mikkola, Hanna and Koch, Steffen and Pudlas, M and Bolwien, C and Walles, H and Schenke-Layland, Katja and Wolfe, Russell J and Leleux, Jardin A and Ahsan, Taby and Brockbank, Kelvin and Mazzini, Letizia and Vercelli, Alessandro and Ferrero, Ivana and Mareschi, Katia and Nasuelli, Nicola and Monaco, Francesco and Fagioli, Franca and ...
Tissue Engineering Part A, ISSN 1937-3341, 02/2011, Volume 17, Issue 3-4, pp. 531 - 584
Journal Article