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1. Full Text Trans-ancestry mutational landscape of hepatocellular carcinoma genomes
by Totoki, Yasushi and Totoki, Yasushi and Tatsuno, Kenji and Covington, Kyle R and Ueda, Hiroki and Creighton, Chad J and Kato, Mamoru and Tsuji, Shingo and Donehower, Lawrence A and Slagle, Betty L and Nakamura, Hiromi and Yamamoto, Shogo and Shinbrot, Eve and Hama, Natsuko and Lehmkuhl, Megan and Hosoda, Fumie and Arai, Yasuhito and Walker, Kim and Dahdouli, Mahmoud and Gotoh, Kengo and Nagae, Genta and Gingras, Marie-Claude and Muzny, Donna M and Ojima, Hidenori and Shimada, Kazuaki and Midorikawa, Yutaka and Goss, John A and Cotton, Ronald and Hayashi, Akimasa and Shibahara, Junji and Ishikawa, Shumpei and Guiteau, Jacfranz and Tanaka, Mariko and Urushidate, Tomoko and Ohashi, Shoko and Okada, Naoko and Doddapaneni, Harsha and Wang, Min and Zhu, Yiming and Dinh, Huyen and Okusaka, Takuji and Kokudo, Norihiro and Kosuge, Tomoo and Takayama, Tadatoshi and Fukayama, Masashi and Gibbs, Richard A and Wheeler, David A and Aburatani, Hiroyuki and Shibata, Tatsuhiro
Nature genetics, ISSN 1061-4036, 12/2014, Volume 46, Issue 12, pp. 1267 - 1273
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Carcinoma, Hepatocellular - epidemiology | United States | Humans | Gene Expression Regulation, Neoplastic | Hepacivirus - genetics | Exome | Liver Neoplasms - epidemiology | TOR Serine-Threonine Kinases - genetics | Telomerase - genetics | DNA Mutational Analysis | Carcinoma, Hepatocellular - genetics | Principal Component Analysis | Carcinoma, Hepatocellular - ethnology | Genome, Viral | Liver Neoplasms - genetics | Japan | European Continental Ancestry Group | Models, Statistical | Liver Neoplasms - ethnology | Asian Continental Ancestry Group | Algorithms | Hepatitis B virus - genetics | CpG Islands | Mutation | Genome, Human | Medical research | Gene mutations | Medicine, Experimental | Development and progression | Genetic aspects | Hepatoma | Research | Medical statistics | Identification and classification | Liver cancer | Human papillomavirus | Data analysis | Genealogy | Research & development--R&D | Genomics | Software | Infections | Genomes | Chromosomes | Tumors | Index Medicus
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2. Full Text Structure and function of the healthy pre-adolescent pediatric gut microbiome
by Hollister, Emily B and Riehle, Kevin and Luna, Ruth Ann and Weidler, Erica M and Rubio-Gonzales, Michelle and Mistretta, Toni-Ann and Raza, Sabeen and Doddapaneni, Harsha V and Metcalf, Ginger A and Muzny, Donna M and Gibbs, Richard A and Petrosino, Joseph F and Shulman, Robert J and Versalovic, James
Microbiome, ISSN 2049-2618, 08/2015, Volume 3, Issue 1, pp. 36 - 36
Life Sciences & Biomedicine | Microbiology | Science & Technology | Age Factors | Humans | Gastrointestinal Microbiome | Male | Biodiversity | Healthy Volunteers | DNA Barcoding, Taxonomic | RNA, Ribosomal, 16S - genetics | Adult | Female | Child | Metagenome | Cluster Analysis | Pediatrics | Microbiota (Symbiotic organisms) | RNA | Medical care | Shotguns | Comparative analysis | Quality management | Index Medicus
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3. Full Text PacBio-LITS: A large-insert targeted sequencing method for characterization of human disease-associated chromosomal structural variations
by Wang, Min and Wang, Min and Beck, Christine R and Beck, Christine R and English, Adam C and English, Adam C and Meng, Qingchang and Meng, Qingchang and Buhay, Christian and Buhay, Christian and Han, Yi and Han, Yi and Doddapaneni, Harsha V and Doddapaneni, Harsha V and Yu, Fuli and Yu, Fuli and Boerwinkle, Eric and Boerwinkle, Eric and Lupski, James R and Lupski, James R and Muzny, Donna M and Muzny, Donna M and Gibbs, Richard A and Gibbs, Richard A
BMC genomics, ISSN 1471-2164, 2015, Volume 16, Issue 1, pp. 1 - 12
Targeted sequencing | Single molecule sequencing | Complex genomic rearrangement | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Gene Library | Gene Rearrangement | Humans | Chromosome Aberrations | Genetic Association Studies - methods | Workflow | Genomics - methods | High-Throughput Nucleotide Sequencing - methods | Comparative analysis | DNA | Index Medicus
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4. Full Text Temporal development of the gut microbiome in early childhood from the TEDDY study
by Stewart, Christopher J and Ajami, Nadim J and O’Brien, Jacqueline L and Hutchinson, Diane S and Smith, Daniel P and Wong, Matthew C and Ross, Matthew C and Lloyd, Richard E and Doddapaneni, HarshaVardhan and Metcalf, Ginger A and Muzny, Donna and Gibbs, Richard A and Vatanen, Tommi and Huttenhower, Curtis and Xavier, Ramnik J and Rewers, Marian and Hagopian, William and Toppari, Jorma and Ziegler, Anette-G and She, Jin-Xiong and Akolkar, Beena and Lernmark, Ake and Hyoty, Heikki and Vehik, Kendra and Krischer, Jeffrey P and Petrosino, Joseph F
Nature (London), ISSN 0028-0836, 10/2018, Volume 562, Issue 7728, pp. 583 - 588
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Humans | Child, Preschool | Firmicutes - genetics | Infant | Male | Gastrointestinal Microbiome - physiology | Bifidobacterium - isolation & purification | Case-Control Studies | Time Factors | Diabetes Mellitus, Type 1 - microbiology | Female | Surveys and Questionnaires | Diabetes Mellitus, Type 1 - immunology | Child | Siblings | Datasets as Topic | Firmicutes - isolation & purification | Bifidobacterium - classification | Bifidobacterium - genetics | Firmicutes - classification | Breast Feeding - statistics & numerical data | Gastrointestinal Microbiome - genetics | Pets | Animals | Adolescent | RNA, Ribosomal, 16S - genetics | Gastrointestinal Microbiome - immunology | Milk, Human - immunology | Milk, Human - microbiology | Cluster Analysis | Medical research | Microbiota (Symbiotic organisms) | Environmental aspects | Medicine, Experimental | Development and progression | Research | Diabetes | Children | Health aspects | rRNA 16S | Breastfeeding & lactation | Taxonomy | Crosstalk | Microbiomes | Families & family life | Infants | Diabetes mellitus (insulin dependent) | Birth | Phase transitions | Gene sequencing | Microorganisms | Microbiota | Intestinal microflora | Age | Geographical distribution | Maturation | Diabetes mellitus | Environmental factors | Breast feeding | Metabolism | Multiculturalism & pluralism | Asthma | Babies | Antibiotics | Autoimmune diseases | Breast milk | Structure-function relationships | Index Medicus | Basic Medicine | Medical and Health Sciences | Microbiology in the medical area | Mikrobiologi inom det medicinska området | Medicin och hälsovetenskap | Medicinska och farmaceutiska grundvetenskaper
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5. Full Text Next Generation Sequencing of 134 Children with Autism Spectrum Disorder and Regression
by Yin, Jiani and Chun, Chun-An and Zavadenko, Nikolay N and Pechatnikova, Natalia L and Naumova, Oxana Yu and Doddapaneni, Harsha V and Hu, Jianhong and Muzny, Donna M and Schaaf, Christian P and Grigorenko, Elena L
Genes, ISSN 2073-4425, 08/2020, Volume 11, Issue 8, p. 853
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Ethylenediaminetetraacetic acid | Autism | Development and progression | Genetic aspects | Methyltransferases | Genes | DNA polymerase | Genomes | Hybridization | Recruitment | Heterozygosity | Pathogenicity | Next-generation sequencing | Methyl-CpG binding protein | MeCP2 protein | Etiology | Sodium channels (voltage-gated) | Software | Mutation | Ubiquitin-protein ligase | Deoxyribonucleic acid--DNA | Index Medicus | variant classification | exon capture and sequencing | ACMG standards and guidelines | developmental regression | autism
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6. Full Text Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome
by Panfilio, Kristen A and Vargas Jentzsch, Iris M and Benoit, Joshua B and Erezyilmaz, Deniz and Suzuki, Yuichiro and Colella, Stefano and Robertson, Hugh M and Poelchau, Monica F and Waterhouse, Robert M and Ioannidis, Panagiotis and Weirauch, Matthew T and Hughes, Daniel S. T and Murali, Shwetha C and Werren, John H and Jacobs, Chris G. C and Duncan, Elizabeth J and Armisén, David and Vreede, Barbara M. I and Baa-Puyoulet, Patrice and Berger, Chloé S and Chang, Chun-Che and Chao, Hsu and Chen, Mei-Ju M and Chen, Yen-Ta and Childers, Christopher P and Chipman, Ariel D and Cridge, Andrew G and Crumière, Antonin J. J and Dearden, Peter K and Didion, Elise M and Dinh, Huyen and Doddapaneni, Harsha Vardhan and Dolan, Amanda and Dugan, Shannon and Extavour, Cassandra G and Febvay, Gérard and Friedrich, Markus and Ginzburg, Neta and Han, Yi and Heger, Peter and Holmes, Christopher J and Horn, Thorsten and Hsiao, Yi-Min and Jennings, Emily C and Johnston, J. Spencer and Jones, Tamsin E and Jones, Jeffery W and Khila, Abderrahman and Koelzer, Stefan and Kovacova, Viera and Leask, Megan and Lee, Sandra L and Lee, Chien-Yueh and Lovegrove, MacKenzie R and Lu, Hsiao-Ling and Lu, Yong and Moore, Patricia J and Munoz-Torres, Monica C and Muzny, Donna M and Palli, Subba R and Parisot, Nicolas and Pick, Leslie and Porter, Megan L and Qu, Jiaxin and Refki, Peter N and Richter, Rose and Rivera-Pomar, Rolando and Rosendale, Andrew J and Roth, Siegfried and Sachs, Lena and Santos, M. Emília and Seibert, Jan and Sghaier, Essia and Shukla, Jayendra N and Stancliffe, Richard J and Tidswell, Olivia and Traverso, Lucila and Van Der Zee, Maurijn and Viala, Séverine and Worley, Kim C and Zdobnov, Evgeny M and Gibbs, Richard A and Richards, Stephen
Genome Biology, ISSN 1474-7596, 04/2019, Volume 20, Issue 1, pp. 64 - 64
RNAi | Transcription factors | Gene family evolution | Gene structure | Lateral gene transfer | Phytophagy | Evolution of development | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Amino Acid Sequence | CYS2-HIS2 Zinc Fingers | Feeding Behavior | Gene Dosage | Gene Expression Profiling | Gene Transfer, Horizontal | Transcription Factors - genetics | Smell | Hemiptera - growth & development | Animals | Hemiptera - genetics | Pigmentation - genetics | Genome, Insect | Genes, Homeobox | Hemiptera - metabolism | Evolution, Molecular | Integrated software | Nucleotide sequence | RNA-mediated interference | Genomics | Biology | Genomes | Ecology | Pests | Metabolism | Gene expression | Ribonucleic acid--RNA | Feeding | Consortia | Molecular evolution | Animal behavior | Phylogenetics | Genetics | Zinc finger proteins | Invertebrates | Evolution & development | Life Sciences | Populations and Evolution | Ecology, environment | Biodiversity
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7. Full Text Exonuclease mutations in DNA polymerase epsilon reveal replication strand specific mutation patterns and human origins of replication
by Shinbrot, Eve and Henninger, Erin E and Weinhold, Nils and Covington, Kyle R and Göksenin, A. Yasemin and Schultz, Nikolaus and Chao, Hsu and Doddapaneni, Harsha Vardhan and Muzny, Donna M and Gibbs, Richard A and Sander, Chris and Pursell, Zachary F and Wheeler, David A
Genome research, ISSN 1088-9051, 11/2014, Volume 24, Issue 11, pp. 1740 - 1750
Biochemistry & Molecular Biology | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Neoplasms - metabolism | Microsatellite Instability | Ataxia Telangiectasia Mutated Proteins - metabolism | DNA Polymerase III - genetics | Humans | Databases, Genetic | Phosphatidylinositol 3-Kinases - metabolism | Mutation, Missense | DNA Polymerase II - metabolism | Tumor Suppressor Protein p53 - genetics | Neoplasms - genetics | DNA Mutational Analysis | Exonucleases - genetics | Exonucleases - metabolism | DNA Polymerase II - genetics | Protein Structure, Tertiary | Genome-Wide Association Study | Tumor Suppressor Protein p53 - metabolism | Models, Molecular | Neoplasms - enzymology | DNA Replication | Codon, Nonsense | DNA Polymerase II - chemistry | Phosphatidylinositol 3-Kinases - genetics | Exonucleases - chemistry | Replication Origin - genetics | Ataxia Telangiectasia Mutated Proteins - genetics | DNA Polymerase III - metabolism | DNA polymerases | Phenotype | DNA replication | Research | Gene mutations | Index Medicus
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8. Full Text Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma
by Ally, Adrian and Balasundaram, Miruna and Carlsen, Rebecca and Chuah, Eric and Clarke, Amanda and Dhalla, Noreen and Holt, Robert A and Jones, Steven J.M and Lee, Darlene and Ma, Yussanne and Marra, Marco A and Mayo, Michael and Moore, Richard A and Mungall, Andrew J and Schein, Jacqueline E and Sipahimalani, Payal and Tam, Angela and Thiessen, Nina and Cheung, Dorothy and Wong, Tina and Brooks, Denise and Robertson, A. Gordon and Bowlby, Reanne and Mungall, Karen and Sadeghi, Sara and Xi, Liu and Covington, Kyle and Shinbrot, Eve and Wheeler, David A and Gibbs, Richard A and Donehower, Lawrence A and Wang, Linghua and Bowen, Jay and Gastier-Foster, Julie M and Gerken, Mark and Helsel, Carmen and Leraas, Kristen M and Lichtenberg, Tara M and Ramirez, Nilsa C and Wise, Lisa and Zmuda, Erik and Gabriel, Stacey B and Meyerson, Matthew and Cibulskis, Carrie and Murray, Bradley A and Shih, Juliann and Beroukhim, Rameen and