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1. Full Text Contrasting patterns of longitudinal population dynamics and antimicrobial resistance mechanisms in two priority bacterial pathogens over 7 years in a single center
by Ellington, Matthew J and Heinz, Eva and Wailan, Alexander M and Dorman, Matthew J and De Goffau, Marcus and Cain, Amy K and Henson, Sonal P and Gleadall, Nicholas and Boinett, Christine J and Dougan, Gordon and Brown, Nicholas M and Woodford, Neil and Parkhill, Julian and Török, M. Estée and Peacock, Sharon J and Thomson, Nicholas R
Genome Biology, ISSN 1474-7596, 09/2019, Volume 20, Issue 1, pp. 184 - 184
Plasmid diversity | Intrinsic resistance | Population dynamics | Resistance mechanisms | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Conserved Sequence - genetics | Enterobacter cloacae - drug effects | Enterobacter cloacae - genetics | Genome, Bacterial | Klebsiella pneumoniae - isolation & purification | Klebsiella pneumoniae - drug effects | Sequence Analysis, DNA | Genetic Variation | Klebsiella pneumoniae - genetics | Anti-Bacterial Agents - pharmacology | Drug Resistance, Bacterial - drug effects | Drug Resistance, Bacterial - genetics | Population Dynamics | Pathogens | Research & development--R&D | Cloning | Metadata | Opportunist infection | Antimicrobial agents | Genomes | Drug resistance | Epidemiology | Plasmids | Population | Mutation | Antimicrobial resistance | Pharmaceuticals | Index Medicus
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2. Full Text Integrated view of Vibrio cholerae in the Americas
by Domman, Daryl and Quilici, Marie-Laure and Dorman, Matthew J and Njamkepo, Elisabeth and Mutreja, Ankur and Mather, Alison E and Delgado, Gabriella and Morales-Espinosa, Rosario and Grimont, Patrick A. D and Lizárraga-Partida, Marcial Leonardo and Bouchier, Christiane and Aanensen, David M and Kuri-Morales, Pablo and Tarr, Cheryl L and Dougan, Gordon and Parkhill, Julian and Campos, Josefina and Cravioto, Alejandro and Weill, François-Xavier and Thomson, Nicholas R
Science (American Association for the Advancement of Science), ISSN 0036-8075, 11/2017, Volume 358, Issue 6364, pp. 789 - 793
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Latin America - epidemiology | Vibrio cholerae - genetics | Cholera - epidemiology | Drug Resistance, Multiple, Bacterial | Humans | Pandemics - prevention & control | Cholera - prevention & control | Vibrio cholerae - isolation & purification | Vibrio cholerae - classification | Communicable Disease Control | Sequence Analysis, DNA | Cholera - microbiology | Vibrio cholerae | Cholera | Genetic aspects | Water-borne diseases | Epidemics | Pathogens | Populations | Pandemics | Genomes | Infections | Disease control | Epidemiology | Gene sequencing | Consolidation | Ecological niches | Bacteria | Cholera toxin | Continents | Niches | Public health | Index Medicus | Life Sciences | Microbiology and Parasitology | Santé publique et épidémiologie
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3. Full Text 'Community evolution' - laboratory strains and pedigrees in the age of genomics
by Dorman, Matthew J and Thomson, Nicholas R
Microbiology (Society for General Microbiology), ISSN 1350-0872, 03/2020, Volume 166, Issue 3, pp. 233 - 238
Life Sciences & Biomedicine | Microbiology | Science & Technology | Index Medicus
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4. Full Text Type II and type IV toxin-antitoxin systems show different evolutionary patterns in the global Klebsiella pneumoniae population
by Horesh, Gal and Fino, Cinzia and Harms, Alexander and Dorman, Matthew J and Parts, Leopold and Gerdes, Kenn and Heinz, Eva and Thomson, Nicholas R
Nucleic acids research, ISSN 0305-1048, 05/2020, Volume 48, Issue 8, pp. 4357 - 4370
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Index Medicus | AcademicSubjects | SCI00010 | Genomics
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5. Full Text High quality reference genomes for toxigenic and non-toxigenic Vibrio cholerae serogroup O139
by Dorman, Matthewj and Domman, Daryl and Uddin, Muhammad Ikhtear and Sharmin, Salma and Afrad, Mokibul Hassan and Begum, Yasmin Ara and Qadri, Firdausi and Thomson, Nicholas R
Scientific reports, ISSN 2045-2322, 04/2019, Volume 9, Issue 1, pp. 5865 - 5865
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Pathogens | Phenotypes | Pandemics | Cholera | Genomes | Cholera toxin | Chromosomes | Index Medicus
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6. Full Text Genomics of the Argentinian cholera epidemic elucidate the contrasting dynamics of epidemic and endemic Vibrio cholerae
by Dorman, Matthew J and Domman, Daryl and Poklepovich, Tomás and Tolley, Charlotte and Zolezzi, Gisella and Kane, Leanne and Viñas, María Rosa and Panagópulo, Marcela and Moroni, Miriam and Binsztein, Norma and Caffer, María Inés and Clare, Simon and Dougan, Gordon and Salmond, George P. C and Parkhill, Julian and Campos, Josefina and Thomson, Nicholas R
Nature communications, ISSN 2041-1723, 12/2020, Volume 11, Issue 1, pp. 4918 - 4918
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Water-borne diseases | Epidemics | Pandemics | Bacteria | Infections | Cholera | Genomes | Disease control | Invariants | Gene sequencing | Index Medicus
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7. Full Text Defining endemic cholera at three levels of spatiotemporal resolution within Bangladesh
by Domman, Daryl and Chowdhury, Fahima and Khan, Ashraful I and Dorman, Matthew J and Mutreja, Ankur and Uddin, Muhammad Ikhtear and Paul, Anik and Begum, Yasmin A and Charles, Richelle C and Calderwood, Stephen B and Bhuiyan, Taufiqur R and Harris, Jason B and Larocque, Regina C and Ryan, Edward T and Qadri, Firdausi and Thomson, Nicholas R
Nature genetics, ISSN 1061-4036, 07/2018, Volume 50, Issue 7, pp. 951 - 955
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Genome, Bacterial - genetics | Africa - epidemiology | Asia - epidemiology | Disease Outbreaks | Vibrio cholerae - genetics | Cholera - epidemiology | Humans | Bangladesh - epidemiology | Phylogeny | Genomics - methods | Cholera - microbiology | Spatial analysis (Statistics) | Usage | Disease transmission | Distribution | Cholera | Genetic aspects | Nucleotide sequencing | Research | Social aspects | DNA sequencing | Water-borne diseases | Epidemics | Pathogens | Pandemics | Households | Regional analysis | Outbreaks | Infections | Genomes | Patients | Gene sequencing | Surveillance | Phylogenetics | Bioinformatics | Public health | Vibrio | Index Medicus
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8. Full Text The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium
by Carsten Kröger and Shane C. Dillon and Andrew D. S. Cameron and Kai Papenfort and Sathesh K. Sivasankaran and Karsten Hokamp and Yanjie Chao and Alexandra Sittka and Magali Hébrard and Kristian Händler and Aoife Colgan and Pimlapas Leekitcharoenphon and Gemma C. Langridge and Amanda J. Lohan and Brendan Loftus and Sacha Lucchini and David W. Ussery and Charles J. Dorman and Nicholas R. Thomson and Jörg Vogel and Jay C. D. Hinton
Proceedings of the National Academy of Sciences - PNAS, ISSN 0027-8424, 05/2012, Volume 109, Issue 20, pp. E1277 - E1286
Pathogenicity | Transcriptional mapping | Noncoding RNA | Posttranscriptional regulation | Genome sequence | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Oligonucleotides - genetics | Gene Library | Salmonella typhimurium - genetics | Molecular Sequence Data | Promoter Regions, Genetic - genetics | Sequence Analysis, RNA - methods | Blotting, Northern | Gene Expression Regulation, Bacterial - genetics | Chromatin Immunoprecipitation | Microarray Analysis | Base Sequence | Transcription Initiation Site | RNA, Small Untranslated - genetics | Transcription, Genetic - genetics | Regulatory Sequences, Ribonucleic Acid - genetics | Proteins | Salmonella | Gene expression | Ribonucleic acid--RNA | Metabolism | Index Medicus | Chromatin | Immunoprecipitation | Landscape | stationary phase | Transcription | Virulence | Antisense | DNA-directed RNA polymerase | Promoters | Infection | Models | Chromosomes | posttranscriptional regulation | Biological Sciences | pathogenicity | noncoding RNA | PNAS Plus | transcriptional mapping | genome sequence
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9. Full Text Dietary Soluble and Insoluble Fiber With or Without Enzymes Altered the Intestinal Microbiota in Weaned Pigs Challenged With Enterotoxigenic E. coli F18
by Li, Qingyun and Peng, Xiyu and Burrough, Eric R and Sahin, Orhan and Gould, Stacie A and Gabler, Nicholas K and Loving, Crystal L and Dorman, Karin S and Patience, John F
Frontiers in microbiology, ISSN 1664-302X, 05/2020, Volume 11, pp. 1110 - 1110
Life Sciences & Biomedicine | Microbiology | Science & Technology | swine | carbohydrases | E. coli infection | soluble fiber | gut microbiota | insoluble fiber
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