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index medicus (15) 15
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1. Full Text A mixed community of actinomycetes produce multiple antibiotics for the fungus farming ant Acromyrmex octospinosus
by Barke, Jörg and Seipke, Ryan F and Grüschow, Sabine and Heavens, Darren and Drou, Nizar and Bibb, Mervyn J and Goss, Rebecca J.M and Yu, Douglas W and Hutchings, Matthew I
BMC Biology, ISSN 1741-7007, 08/2010, Volume 8, Issue 1, pp. 109 - 109
Background: Attine ants live in an intensely studied tripartite mutualism with the fungus Leucoagaricus gongylophorus, which provides food to the ants, and... 
PARASITES | BACTERIA | NYSTATIN | GENE-CLUSTER | BIOSYNTHESIS | ESCOVOPSIS | GARDEN | BIOLOGY | GROWING ANTS | SYMBIOSIS | PROTECT | Symbiosis | Molecular Sequence Data | Candicidin - biosynthesis | Ants - microbiology | Sequence Analysis, DNA | Actinomycetales - metabolism | Biological Evolution | Tandem Mass Spectrometry | Animals | Actinomycetales - genetics | Base Sequence | Chromatography, Liquid | Biological Assay | Antifungal Agents | Actinomycetes | Ants | Research | Antibiotics | Bacteria | Genomes | Microbiology | Biological assays | Natural products
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2. Full Text Analyses of pig genomes provide insight into porcine demography and evolution
by Groenen, Martien A.M and Archibald, Alan L and Uenishi, Hirohide and Tuggle, Christopher K and Takeuchi, Yasuhiro and Rothschild, Max F and Rogel-Gaillard, Claire and Park, Chankyu and Milan, Denis and Megens, Hendrik-Jan and Li, Shengting and Larkin, Denis M and Kim, Heebal and Frantz, Laurent A.F and Caccamo, Mario and Ahn, Hyeonju and Aken, Bronwen L and Anselmo, Anna and Anthon, Christian and Auvil, Loretta and Badaoui, Bouabid and Beattie, Craig W and Bendixen, Christian and Berman, Daniel and Blecha, Frank and Blomberg, Jonas and Bolund, Lars and Bosse, Mirte and Botti, Sara and Bujie, Zhan and Bystrom, Megan and Capitanu, Boris and Carvalho-Silva, Denise and Chardon, Patrick and Chen, Celine and Cheng, Ryan and Choi, Sang-Haeng and Chow, William and Clark, Richard C and Clee, Christopher and Crooijmans, Richard P.M.A and Dawson, Harry D and Dehais, Patrice and De Sapio, Fioravante and Dibbits, Bert and Drou, Nizar and Du, Zhi-Qiang and Eversole, Kellye and Fadista, Joao and Fairley, Susan and Faraut, Thomas and Faulkner, Geoffrey J and Fowler, Katie E and Fredholm, Merete and Fritz, Eric and Gilbert, James G.R and Giuffra, Elisabetta and Gorodkin, Jan and Griffin, Darren K and Harrow, Jennifer L and Hayward, Alexander and Howe, Kerstin and Hu, Zhi-Liang and Humphray, Sean J and Hunt, Toby and Hornshoøj, Henrik and Jeon, Jin-Tae and Jern, Patric and Jones, Matthew and Jurka, Jerzy and Kanamori, Hiroyuki and Kapetanovic, Ronan and Kim, Jaebum and Kim, Jae-Hwan and Kim, Kyu-Won and Kim, Tae-Hun and Larson, Greger and Lee, Kyooyeol and Lee, Kyung-Tai and Leggett, Richard and Lewin, Harris A and Li, Yingrui and Liu, Wansheng and Loveland, Jane E and Lu, Yao and Lunney, Joan K and Ma, Jian and Madsen, Ole and Mann, Katherine and Matthews, Lucy and McLaren, Stuart and Morozumi, Takeya and Murtaugh, Michael P and Narayan, Jitendra and Nguyen, Dinh Truong and Ni, Peixiang and Oh, Song-Jung and Onteru, Suneel and Panitz, Frank and Park, Eung-Woo and ... and Medicinska fakulteten and Science for Life Laboratory, SciLifeLab and Fysiologi and Medicinska och farmaceutiska vetenskapsområdet and Institutionen för medicinsk biokemi och mikrobiologi and Klinisk virologi and Uppsala universitet and Institutionen för medicinska vetenskaper and Klinisk mikrobiologi och infektionsmedicin and Institutionen för neurovetenskap
Nature, ISSN 0028-0836, 11/2012, Volume 491, Issue 7424, pp. 393 - 398
For 10,000 years pigs and humans have shared a close and complex relationship. From domestication to modern breeding practices, humans have shaped the genomes... 
COMPLEX | GENE | VARIANTS | MULTIDISCIPLINARY SCIENCES | SEQUENCE | RECEPTOR | TASTE | LOCUS | SUS-SCROFA | Sus scrofa - genetics | Animals | Demography | Genome - genetics | Molecular Sequence Data | Models, Animal | Phylogeny | Sus scrofa - classification | Population Dynamics | Chromosome mapping | Genetic aspects | Genomes | Research | Identification and classification | Wild boar | Hogs | Genetics | Evolution | Genes | Genomics | Life Sciences | Animal biology | Biological Sciences | Biology with specialization in Evolutionary Functional Genomics | Lantbruksvetenskaper | Animal and Dairy Science | Agricultural Sciences | Biologi med inriktning mot evolutionär funktionsgenomik | Genetik | Naturvetenskap | Biologiska vetenskaper | Husdjursvetenskap | Biology with specialization in Evolutionary Genetics | Evolutionsbiologi | Biologi med inriktning mot evolutionär genetik | Natural Sciences | Evolutionary Biology
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3. Full Text β-actin regulates a heterochromatin landscape essential for optimal induction of neuronal programs during direct reprograming
by Xie, Xin and Jankauskas, Robertas and Mazari, Aslam M. A and Drou, Nizar and Percipalle, Piergiorgio
PLoS Genetics, ISSN 1553-7390, 12/2018, Volume 14, Issue 12, p. e1007846
During neuronal development, beta-actin serves an important role in growth cone mediated axon guidance. Consistent with this notion, in vivo ablation of the... 
TRANSCRIPTION FACTORS | NUCLEAR ACTIN | COMPLEX | PROTEIN | BRG1 | GENES | GROWTH | GENETICS & HEREDITY | XENOPUS HOMOLOG | DYNAMICS | DIFFERENTIATION | Chromatin | BRG1 protein | Transcription factors | Genomics | Genes | Nervous system | Biology | Neurogenesis | Cell adhesion & migration | Proteins | Heterochromatin | Cell fate | Actin | DNA methylation | Fibroblasts | Bioinformatics | Growth cones | Neurons | Embryo fibroblasts | Ribonucleic acid--RNA | Mammals | Gene expression | Embryos | Investigations | Insects | Software | Axon guidance | Methylation | Adenosine triphosphatase | RNA | Ribonucleic acid
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4. Full Text The genomic and phenotypic diversity of Schizosaccharomyces pombe
by Jeffares, Daniel C and Rallis, Charalampos and Rieux, Adrien and Speed, Doug and Převorovský, Martin and Mourier, Tobias and Marsellach, Francesc X and Iqbal, Zamin and Lau, Winston and Cheng, Tammy M K and Pracana, Rodrigo and Mülleder, Michael and Lawson, Jonathan L D and Chessel, Anatole and Bala, Sendu and Hellenthal, Garrett and O'Fallon, Brendan and Keane, Thomas and Simpson, Jared T and Bischof, Leanne and Tomiczek, Bartlomiej and Bitton, Danny A and Sideri, Theodora and Codlin, Sandra and Hellberg, Josephine E E U and Van Trigt, Laurent and Jeffery, Linda and Li, Juan-Juan and Atkinson, Sophie and Thodberg, Malte and Febrer, Melanie and McLay, Kirsten and Drou, Nizar and Brown, William and Hayles, Jacqueline and Salas, Rafael E Carazo and Ralser, Markus and Maniatis, Nikolas and Balding, David J and Balloux, Francois and Durbin, Richard and Bähler, Jürg
Nature Genetics, ISSN 1061-4036, 02/2015, Volume 47, Issue 3, pp. 235 - 241
Natural variation within species reveals aspects of genome evolution and function. The fission yeast Schizosaccharomyces pombe is an important model for... 
FISSION YEAST | TRANSPOSON INTEGRATION | HIGH-THROUGHPUT | DNA | GENETICS & HEREDITY | POPULATION-STRUCTURE | GENERATION | MODEL | SEQUENCING DATA | SACCHAROMYCES-CEREVISIAE | ASSOCIATION | Genetic Variation | Schizosaccharomyces - genetics | Phenotype | Genome, Fungal | Humans | Genotype | Polymorphism, Single Nucleotide | Genome-Wide Association Study - methods | Genomics - methods | Genetic aspects | Research | Saccharomyces | Single nucleotide polymorphisms | Biological diversity | Geography | Medical research | Automation | Yeast | Laboratories | Ecology | Genomes | Gene expression | Confidence intervals | Councils | Morphology | Phylogenetics | Population
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5. Full Text [beta]-actin regulates a heterochromatin landscape essential for optimal induction of neuronal programs during direct reprograming
by Xie, Xin and Jankauskas, Robertas and Mazari, Aslam M. A and Drou, Nizar and Percipalle, Piergiorgio
PLoS Genetics, ISSN 1553-7390, 12/2018, Volume 14, Issue 12
During neuronal development, [beta]-actin serves an important role in growth cone mediated axon guidance. Consistent with this notion, in vivo ablation of the... 
Gene expression | Chromatin | Research
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6. Full Text Comparative Analysis between Homoeologous Genome Segments of Brassica napus and Its Progenitor Species Reveals Extensive Sequence-Level Divergence
by Foo Cheung and Martin Trick and Nizar Drou and Yong Pyo Lim and Jee-Young Park and Soo-Jin Kwon and Jin-A Kim and Rod Scott and J. Chris Pires and Andrew H. Paterson and Chris Town and Ian Bancroft
The Plant Cell, ISSN 1040-4651, 7/2009, Volume 21, Issue 7, pp. 1912 - 1928
Homoeologous regions of Brassica genomes were analyzed at the sequence level. These represent segments of the Brassica A genome as found in Brassica rapa and... 
Genetic transposition | Polyploidy | Mumming | Transposons | Genomics | Genes | Evolution | Genomes | Oilseeds | Plant cells | ARABIDOPSIS-THALIANA | PHYLOGENETIC ANALYSIS | BIOCHEMISTRY & MOLECULAR BIOLOGY | TRANSPOSABLE ELEMENTS | COMPARATIVE MAP | PLANT SCIENCES | CELL BIOLOGY | EVOLUTION | OILSEED RAPE | GENE LOSS | DUPLICATION | MAIZE | OLERACEA | Molecular Sequence Data | Brassica napus - genetics | Genome, Plant - genetics | Sequence Analysis, DNA | Brassica - genetics | Evolution, Molecular | Nucleotide sequence | Divergent evolution | Rape (Plant) | Genetic aspects | Research | Comparative analysis | Natural history
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7. Full Text A viral discovery methodology for clinical biopsy samples utilising massively parallel next generation sequencing
by Daly, Gordon M and Bexfield, Nick and Heaney, Judith and Stubbs, Sam and Mayer, Antonia P and Palser, Anne and Kellam, Paul and Drou, Nizar and Caccamo, Mario and Tiley, Laurence and Alexander, Graeme J. M and Bernal, William and Heeney, Jonathan L
PLoS ONE, ISSN 1932-6203, 12/2011, Volume 6, Issue 12, p. e28879
Here we describe a virus discovery protocol for a range of different virus genera, that can be applied to biopsy-sized tissue samples. Our viral enrichment... 
HEPATITIS-B-VIRUS | AMPLIFICATION | DISEASES | BIOLOGY | FRAGMENT | C VIRUS | INFECTION | IDENTIFICATION | CARCINOMA | GENOME | PCR | Liver - virology | Viruses - isolation & purification | Animals | RNA, Viral - genetics | Viruses - genetics | Biopsy | Humans | Dogs | Amino acids | Nucleic acids | Multiprocessing | Liver | Methods | Antigens | Research parks | Copy number | Viruses | Infections | Genomes | Veterinary medicine | College campuses | Data bases | Hepatitis | Acids
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8. Full Text RAMPART: A workflow management system for de novo genome assembly
by Mapleson, Daniel and Drou, Nizar and Swarbreck, David
Bioinformatics, ISSN 1367-4803, 2015, Volume 31, Issue 11, pp. 1824 - 1826
Motivation: The de novo assembly of genomes from whole-genome shotgun sequence data is a computationally intensive, multi-stage task and it is not known a... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Workflow | Software | Genome | Genomics - methods | Computation | Licenses | Genomes | Online | Bioinformatics | Assembly | User manuals (computer programs) | Workflow management systems | Applications Notes
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9. Full Text The genome of the mesopolyploid crop species Brassica rapa
by Wang, Xiaowu and Wang, Hanzhong and Sun, Rifei and Bonnema, A.B and Brassica rapa Genome Sequencing Project Consortium and The Brassica rapa Genome Sequencing Project Consortium
Nature Genetics, ISSN 1061-4036, 2011, Volume 43, Issue 10, pp. 1035 - 1039
We report the annotation and analysis of the draft genome sequence of Brassica rapa accession Chiifu-401-42, a Chinese cabbage. We modeled 41,174 protein... 
PLANT ARABIDOPSIS-THALIANA | EVOLUTION | DIVERSIFICATION | ALIGNMENT | GENETICS | SEQUENCE | GENETICS & HEREDITY | TRIPLICATION | REPRESSOR | LINEAGES | DUPLICATED GENES | Gene Duplication | Polyploidy | Genes, Plant | Molecular Sequence Annotation | Molecular Sequence Data | Genome, Plant | Phylogeny | Brassica rapa - genetics | Sequence Analysis, DNA | Arabidopsis - genetics | Chromosomes, Artificial, Bacterial - genetics | Contig Mapping | Chromosomes, Plant - genetics | Evolution, Molecular | Rural development | Councils | Research & development--R&D | Genomics | Crops | Technological change | Science | Genetics | Evolution | Genomes | Artificial chromosomes | sequence | genetics | triplication | repressor | duplicated genes | lineages | evolution | diversification | alignment | plant arabidopsis-thaliana
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10. Full Text Draft Genome Sequence of Streptomyces Strain S4, a Symbiont of the Leaf-Cutting Ant Acromyrmex octospinosus
by Ryan F. Seipke and Lisa Crossman and Nizar Drou and Darren Heavens and Mervyn J. Bibb and Mario Caccamo and Matthew I. Hutchings
Journal of Bacteriology, ISSN 0021-9193, 08/2011, Volume 193, Issue 16, pp. 4270 - 4271
Article Usage Stats Services JB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley... 
NESTS | PARASITES | BACTERIA | COMMUNITY | ESCOVOPSIS | GARDEN | MICROBIOLOGY | FUNGUS-GROWING ANTS | PROTECT | Symbiosis | Genome, Bacterial | Animals | Streptomyces - classification | Streptomyces - genetics | Molecular Sequence Data | Ants - microbiology | Streptomyces | Genomes | Genetic aspects | Research | Bacterial genetics | Genome Announcements
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11. Full Text The genome and phenome of the green alga chloroidium sp. UTEX 3007 reveal adaptive traits for desert acclimatization
by Nelson, David R and Khraiwesh, Basel and Fu, Weiqi and Alseekh, Saleh and Jaiswal, Ashish and Chaiboonchoe, Amphun and Hazzouri, Khaled M and O’Connor, Matthew J and Butterfoss, Glenn L and Drou, Nizar and Rowe, Jillian D and Harb, Jamil and Fernie, Alisdair R and Gunsalus, Kristin C and Salehi-Ashtiani, Kourosh
eLife, ISSN 2050-084X, 06/2017, Volume 6
To investigate the phenomic and genomic traits that allow green algae to survive in deserts, we characterized a ubiquitous species, Chloroidium sp. UTEX 3007,... 
DIACYLGLYCEROL ACYLTRANSFERASE | L-GLUCOSE | PROTEIN | ENZYME | EVOLUTION | GENE | TOLERANCE | BIOLOGY | MANGANESE CATALASE | DESICCATION | STRESS | Carbon - metabolism | Osmotic Pressure | Chlorophyta - physiology | Stress, Physiological | Metabolome | Acclimatization | United Arab Emirates | Genome, Microbial | Salinity | Chlorophyta - chemistry | Chlorophyta - genetics | Palmitates - analysis | Carbohydrates - analysis | Desert Climate | Sodium Chloride - metabolism | Quantitative trait loci | Green algae | Genetic aspects | Observations | Solvents | Vegetable oils | Laboratories | Ponds | Algae | Desiccation | Genomics | Lipids | Genomes | Biology | Palmitic acid | Chromatography | Osmotic stress | Datasets | Microscopy | Morphology | Physiology | Software | Protein families | Carbon sources
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12. Full Text β-Actin-dependent global chromatin organization and gene expression programs control cellular identity
by Xie, Xin and Almuzzaini, Bader and Drou, Nizar and Kremb, Stephan and Yousif, Ayman and Farrants, Ann-Kristin Östlund and Gunsalus, Kristin and Percipalle, Piergiorgio and Stockholms universitet and Naturvetenskapliga fakulteten and Institutionen för molekylär biovetenskap, Wenner-Grens institut
FASEB Journal, ISSN 0892-6638, 03/2018, Volume 32, Issue 3, pp. 1296 - 1314
During differentiation and development, cell fate and identity are established by waves of genetic reprogramming. Although the mechanisms are largely unknown,... 
Genomic reprogramming | Epigenetics | Chromatin | Genome-wide analysis | Nuclear actin | CELLS | genomic reprogramming | BIOCHEMISTRY & MOLECULAR BIOLOGY | BAF | MECHANISMS | chromatin | epigenetics | CELL BIOLOGY | LINEAGE COMMITMENT | genome-wide analysis | HETEROCHROMATIN | GROWTH | BIOLOGY | ARCHITECTURE | DYNAMICS | DIFFERENTIATION | nuclear actin | Biological Sciences | Naturvetenskap | Biologiska vetenskaper | Natural Sciences
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