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1. Full Text Structure, function and diversity of the healthy human microbiome
by Huttenhower, Curtis and Gevers, Dirk and Knight, Rob and Abubucker, Sahar and Badger, Jonathan H and Chinwalla, Asif T and Creasy, Heather H and Earl, Ashlee M and Fitzgerald, Michael G and Fulton, Robert S and Giglio, Michelle G and Hallsworth-Pepin, Kymberlie and Lobos, Elizabeth A and Madupu, Ramana and Magrini, Vincent and Martin, John C and Mitreva, Makedonka and Muzny, Donna M and Sodergren, Erica J and Versalovic, James and Wollam, Aye M and Worley, Kim C and Wortman, Jennifer R and Young, Sarah K and Zeng, Qiandong and Aagaard, Kjersti M and Abolude, Olukemi O and Allen-Vercoe, Emma and Alm, Eric J and Alvarado, Lucia and Andersen, Gary L and Anderson, Scott and Appelbaum, Elizabeth and Arachchi, Harindra M and Armitage, Gary and Arze, Cesar A and Ayvaz, Tulin and Baker, Carl C and Begg, Lisa and Belachew, Tsegahiwot and Bhonagiri, Veena and Bihan, Monika and Blaser, Martin J and Bloom, Toby and Bonazzi, Vivien and Paul Brooks, J and Buck, Gregory A and Buhay, Christian J and Busam, Dana A and Campbell, Joseph L and Canon, Shane R and Cantarel, Brandi L and Chain, Patrick S. G and Chen, I-Min A and Chen, Lei and Chhibba, Shaila and Chu, Ken and Ciulla, Dawn M and Clemente, Jose C and Clifton, Sandra W and Conlan, Sean and Crabtree, Jonathan and Cutting, Mary A and Davidovics, Noam J and Davis, Catherine C and Desantis, Todd Z and Deal, Carolyn and Delehaunty, Kimberley D and Dewhirst, Floyd E and Deych, Elena and Ding, Yan and Dooling, David J and Dugan, Shannon P and Michael Dunne, Wm and Scott Durkin, A and Edgar, Robert C and Erlich, Rachel L and Farmer, Candace N and Farrell, Ruth M and Faust, Karoline and Feldgarden, Michael and Felix, Victor M and Fisher, Sheila and Fodor, Anthony A and Forney, Larry J and Foster, Leslie and Di Francesco, Valentina and Friedman, Jonathan and Friedrich, Dennis C and Fronick, Catrina C and Fulton, Lucinda L and Gao, Hongyu and Garcia, Nathalia and Giannoukos, Georgia and Giblin, Christina and Giovanni, Maria Y and Goldberg, Jonathan M and Goll, Johannes and Gonzalez, Antonio and Griggs, Allison and ... and Human Microbiome Project Consortiu and Human Microbiome Project Consortium and The Human Microbiome Project Consortium and Joint Genome Institute (JGI)
Nature, ISSN 0028-0836, 06/2012, Volume 486, Issue 7402, pp. 207 - 214
Studies of the human microbiome have revealed that even healthy individuals differ remarkably in the microbes that occupy habitats such as the gut, skin and... 
IDENTIFICATION | BACTERIA | MULTIDISCIPLINARY SCIENCES | Metagenomics | Health | Humans | Male | Biodiversity | Bacteria - genetics | Young Adult | Phenotype | Ecosystem | Adolescent | Bacteria - classification | RNA, Ribosomal, 16S - genetics | Adult | Female | Metabolic Networks and Pathways - physiology | Metagenome | Microbiota (Symbiotic organisms) | Research | Biological diversity | Microbiology | Disease | Habitats | Taxonomy | Data processing | Skin | Life sciences | Genomes
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2. Full Text A framework for human microbiome research
by Methé, Barbara A and Nelson, Karen E and Pop, Mihai and Creasy, Heather H and Giglio, Michelle G and Huttenhower, Curtis and Gevers, Dirk and Petrosino, Joseph F and Abubucker, Sahar and Badger, Jonathan H and Chinwalla, Asif T and Earl, Ashlee M and Fitzgerald, Michael G and Fulton, Robert S and Hallsworth-Pepin, Kymberlie and Lobos, Elizabeth A and Madupu, Ramana and Magrini, Vincent and Martin, John C and Mitreva, Makedonka and Muzny, Donna M and Sodergren, Erica J and Versalovic, James and Wollam, Aye M and Worley, Kim C and Wortman, Jennifer R and Young, Sarah K and Zeng, Qiandong and Aagaard, Kjersti M and Abolude, Olukemi O and Allen-Vercoe, Emma and Alm, Eric J and Alvarado, Lucia and Andersen, Gary L and Anderson, Scott and Appelbaum, Elizabeth and Arachchi, Harindra M and Armitage, Gary and Arze, Cesar A and Ayvaz, Tulin and Baker, Carl C and Begg, Lisa and Belachew, Tsegahiwot and Bhonagiri, Veena and Bihan, Monika and Blaser, Martin J and Bloom, Toby and Bonazzi, Vivien R and Brooks, Paul and Buck, Gregory A and Buhay, Christian J and Busam, Dana A and Campbell, Joseph L and Canon, Shane R and Cantarel, Brandi L and Chain, Patrick S and Chen, I-Min A and Chen, Lei and Chhibba, Shaila and Chu, Ken and Ciulla, Dawn M and Clemente, Jose C and Clifton, Sandra W and Conlan, Sean and Crabtree, Jonathan and Cutting, Mary A and Davidovics, Noam J and Davis, Catherine C and Desantis, Todd Z and Deal, Carolyn and Delehaunty, Kimberley D and Dewhirst, Floyd E and Deych, Elena and Ding, Yan and Dooling, David J and Dugan, Shannon P and Michael Dunne, W and Scott Durkin, A and Edgar, Robert C and Erlich, Rachel L and Farmer, Candace N and Farrell, Ruth M and Faust, Karoline and Feldgarden, Michael and Felix, Victor M and Fisher, Sheila and Fodor, Anthony A and Forney, Larry and Foster, Leslie and Di Francesco, Valentina and Friedman, Jonathan and Friedrich, Dennis C and Fronick, Catrina C and Fulton, Lucinda L and Gao, Hongyu and Garcia, Nathalia and Giannoukos, Georgia and Giblin, Christina and Giovanni, Maria Y and Goldberg, Jonathan M and ... and Human Microbiome Project Consortiu and Human Microbiome Project Consortium and The Human Microbiome Project Consortium and Joint Genome Institute (JGI)
Nature, ISSN 0028-0836, 06/2012, Volume 486, Issue 7402, pp. 215 - 221
A variety of microbial communities and their genes (the microbiome) exist throughout the human body, with fundamental roles in human health and disease. The... 
MULTIDISCIPLINARY SCIENCES | CATALOG | Young Adult | Reference Standards | Humans | Adolescent | Metagenomics - methods | RNA, Ribosomal, 16S - genetics | Adult | Female | Male | Statistics as Topic | Bacteria - genetics | Metagenome | Genetic research | Microbiological research | Genomes | Research | Microbiota (Symbiotic organisms) | Studies | Medicine | Microbiology | Publications | Taxonomy | Genomics | Data processing | Manuscripts
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3. Full Text Comparative genomics of Gardnerella vaginalis strains reveals substantial differences in metabolic and virulence potential
by Yeoman, Carl J and Yildirim, Suleyman and Thomas, Susan M and Durkin, A. Scott and Torralba, Manolito and Sutton, Granger and Buhay, Christian J and Ding, Yan and Dugan-Rocha, Shannon P and Muzny, Donna M and Qin, Xiang and Gibbs, Richard A and Leigh, Steven R and Stumpf, Rebecca and White, Bryan A and Highlander, Sarah K and Nelson, Karen E and Wilson, Brenda A
PLoS ONE, ISSN 1932-6203, 2010, Volume 5, Issue 8, p. e12411
Background: Gardnerella vaginalis is described as a common vaginal bacterial species whose presence correlates strongly with bacterial vaginosis (BV). Here we... 
PROTEIN | GENE | ANNOTATION | MULTIDISCIPLINARY SCIENCES | RESISTANCE | SIALIDASE ACTIVITY | BACTERIAL-VAGINOSIS | VAGINOLYSIN | INFECTION | IDENTIFICATION | PROGRAM | Gardnerella vaginalis - pathogenicity | Genomics | Humans | Virulence | Bacterial Proteins - genetics | Molecular Sequence Data | Gardnerella vaginalis - classification | Male | Phylogeny | Gardnerella vaginalis - genetics | Vaginosis, Bacterial - microbiology | Gardnerella vaginalis - metabolism | Bacterial Proteins - metabolism | Female | Vagina - microbiology | Proteins | Biological products | Analysis | Genes | Genomes | Virulence (Microbiology) | Drug resistance | Lysozyme | Data bases | Vaginosis | Gene sequencing | Annotations | Phylogenetics | Bacteria | Trends | Localization | Bioinformatics | Chromosomes | Strains (organisms) | Transfer RNA | Biodegradation | Gene transfer | Vagina | Metabolism | Medicine | Biofilms | Mucin | Pili | Acids | Evolutionary biology | Antitoxins | Extrusion | Toxins | Antimicrobial resistance
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4. Full Text SV-STAT accurately detects structural variation via alignment to reference-based assemblies
by Davis, Caleb F and Ritter, Deborah I and Wheeler, David A and Wang, Hongmei and Ding, Yan and Dugan, Shannon P and Bainbridge, Matthew N and Muzny, Donna M and Rao, Pulivarthi H and Man, Tsz-Kwong and Plon, Sharon E and Gibbs, Richard A and Lau, Ching C
Source Code for Biology and Medicine, ISSN 1751-0473, 06/2016, Volume 11, Issue 1, p. 8
Genomic deletions, inversions, and other rearrangements known collectively as structural variations (SVs) are implicated in many human disorders. Technologies... 
Translocation | Structural variation | Genotype | Genome | Algorithm | Sequencing | Cancer | Usage | Genomics | Research | Nucleotide sequencing | Methods | DNA sequencing | Genetic algorithms | Software | Genomes | Algorithms | Quality | Deoxyribonucleic acid--DNA
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5. Full Text Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence
by Celniker, Susan E and Wheeler, David A and Kronmiller, Brent and Carlson, Joseph W and Halpern, Aaron and Patel, Sandeep and Adams, Mark and Champe, Mark and Dugan, Shannon P and Frise, Erwin and Hodgson, Ann and George, Reed A and Hoskins, Roger A and Laverty, Todd and Muzny, Donna M and Nelson, Catherine R and Pacleb, Joanne M and Park, Soo and Pfeiffer, Barret D and Richards, Stephen and Sodergren, Erica J and Svirskas, Robert and Tabor, Paul E and Wan, Kenneth and Stapleton, Mark and Sutton, Granger G and Venter, Craig and Weinstock, George and Scherer, Steven E and Myers, Eugene W and Gibbs, Richard A and Rubin, Gerald M
Genome biology, ISSN 1465-6906, 2002, Volume 3, Issue 12, pp. RESEARCH0079 - 0079
The Drosophila melanogaster genome was the first metazoan genome to have been sequenced by the whole-genome shotgun (WGS) method. Two issues relating to this... 
Animals | Physical Chromosome Mapping - methods | Euchromatin - genetics | Genome | Drosophila melanogaster - genetics | Research Design | Sequence Analysis, DNA - methods | X Chromosome - genetics | Research
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6. Full Text Molecular and phenotypic variation in patients with severe Hunter syndrome
by Timms, Kirsten M and Bondeson, Marie-Louise and Ansari-Lari, M. Ali and Lagerstedt, Kristina and Muzny, Donna M and Dugan-Rocha, Shannon P and Nelson, David L and Pettersson, Ulf and Gibbs, Richard A and Medicinska fakulteten and Medicinska och farmaceutiska vetenskapsområdet and Institutionen för genetik och patologi and Medicinsk genetik and Uppsala universitet
Human Molecular Genetics, ISSN 0964-6906, 03/1997, Volume 6, Issue 3, pp. 479 - 486
Severe Hunter syndrome is a fatal X-linked lysosomal storage disorder caused by iduronate-2-sulphatase (IDS) deficiency, Patients with complete deletion of the... 
SEVERE HEMOPHILIA-A | IDURONATE-2-SULFATASE GENE | FRAXE | MUCOPOLYSACCHARIDOSIS-II | BIOCHEMISTRY & MOLECULAR BIOLOGY | FRAGILE-X | GENETICS & HEREDITY | IDS GENE | SEARCH TOOL | DELETIONS | LOCUS | COMMON-CAUSE | Gene Expression | Seizures - genetics | Mucopolysaccharidosis II - enzymology | Humans | Trans-Activators | Molecular Sequence Data | Male | Chromosome Mapping | Nuclear Proteins | Proteins - genetics | Phenotype | Pseudogenes | Electrophoresis, Agar Gel | Recombination, Genetic | Gene Deletion | Gene Rearrangement | Cloning, Molecular | Polymerase Chain Reaction | Iduronate Sulfatase - genetics | Mucopolysaccharidosis II - genetics | X Chromosome - genetics | Basic Medicine | Medical Genetics | Medicinsk genetik | Medical and Health Sciences | Medicin och hälsovetenskap | Medicinska och farmaceutiska grundvetenskaper
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7. Full Text Snapshot surveys for lake monitoring, more than a shot in the dark
by Mantzouki, Evanthia and Beklioglu, Meryem and Brookes, Justin D and Domis, Lisette Nicole de Senerpont and Dugan, Hilary A and Doubek, Jonathan P and Grossart, Hans-Peter and Nejstgaard, Jens C and Pollard, Amina I and Ptacnik, Robert and Rose, Kevin C and Sadro, Steven and Seelen, Laura and Skaff, Nicholas K and Teubner, Katrin and Weyhenmeyer, Gesa A and Ibelings, Bastiaan W
Frontiers in Ecology and Evolution, ISSN 2296-701X, 11/2018, Volume 6
Lake monitoring | Multi-lake snapshot surveys | Phytoplankton ecology | Space-for-time substitution | Nyquist-shannon sampling theorem | SPACE | STREAMS | phytoplankton ecology | lake monitoring | space-for-time substitution | multi-lake snapshot surveys | DYNAMICS | ECOLOGY | CATCHMENT | EUTROPHICATION | Lakes | Protection and preservation | Environmental monitoring | Observations | Methods
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8. Full Text Snapshot Surveys for Lake Monitoring, More Than a Shot in the Dark
by Mantzouki, Evanthia and Beklioǧlu, Meryem and Brookes, Justin D and de Senerpont Domis, Lisette Nicole and Dugan, Hilary A and Doubek, Jonathan P and Grossart, Hans-Peter and Nejstgaard, Jens C and Pollard, Amina I and Ptacnik, Robert and Rose, Kevin C and Sadro, Steven and Seelen, Laura and Skaff, Nicholas K and Teubner, Katrin and Weyhenmeyer, Gesa A and Ibelings, Bastiaan W and Teknisk-naturvetenskapliga vetenskapsområdet and Biologiska sektionen and Uppsala universitet and Institutionen för ekologi och genetik and Limnologi
Frontiers in Ecology and Evolution, ISSN 2296-701X, 2018, Volume 6, Issue November
Naturvetenskap | phytoplankton ecology | lake monitoring | Nyquist-shannon sampling theorem | space-for-time substitution | multi-lake snapshot surveys | Natural Sciences
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9. Full Text The house spider genome reveals an ancient whole-genome duplication during arachnid evolution
by Schwager, Evelyn E and Sharma, Prashant P and Clarke, Thomas and Leite, Daniel J and Wierschin, Torsten and Pechmann, Matthias and Akiyama-Oda, Yasuko and Esposito, Lauren and Bechsgaard, Jesper and Bilde, Trine and Buffry, Alexandra D and Chao, Hsu and Dinh, Huyen and Doddapaneni, HarshaVardhan and Dugan, Shannon and Eibner, Cornelius and Extavour, Cassandra G and Funch, Peter and Garb, Jessica and Gonzalez, Luis B and Gonzalez, Vanessa L and Griffiths-Jones, Sam and Han, Yi and Hayashi, Cheryl and Hilbrant, Maarten and Hughes, Daniel S.T and Janssen, Ralf and Lee, Sandra L and Maeso, Ignacio and Murali, Shwetha C and Muzny, Donna M and Nunes da Fonseca, Rodrigo and Paese, Christian L.B and Qu, Jiaxin and Ronshaugen, Matthew and Schomburg, Christoph and Schönauer, Anna and Stollewerk, Angelika and Torres-Oliva, Montserrat and Turetzek, Natascha and Vanthournout, Bram and Werren, John H and Wolff, Carsten and Worley, Kim C and Bucher, Gregor and Gibbs, Richard A and Coddington, Jonathan and Oda, Hiroki and Stanke, Mario and Ayoub, Nadia A and Prpic, Nikola-Michael and Flot, Jean-François and Posnien, Nico and Richards, Stephen and McGregor, Alistair P and Teknisk-naturvetenskapliga vetenskapsområdet and Paleobiologi and Uppsala universitet and Geovetenskapliga sektionen and Institutionen för geovetenskaper
BMC Biology, ISSN 1741-7007, 07/2017, Volume 15, Issue 1, pp. 62 - 27
Background: The duplication of genes can occur through various mechanisms and is thought to make a major contribution to the evolutionary diversification of... 
Centruroides sculpturatus | Evolution | Parasteatoda tepidariorum | Gene duplication | Genome | Hox genes | CUPIENNIUS-SALEI | HOMEOBOX GENES | EXPRESSION PATTERNS | PRESERVATION | MESOBUTHUS-MARTENSII REVEALS | SEQUENCE ALIGNMENT | BIOLOGY | DOSAGE-SENSITIVITY | CONSEQUENCES | SCALE | Gene Duplication | Animals | Synteny | Female | Male | Spiders - genetics | Evolution, Molecular | Genomes | Genes | Analysis | Genomics | Evolutionary biology | Spiders | Genetic research | Genotype | Genetic aspects | Research | Properties | Adaptations | Peptides | Biological evolution | Bark | Evolutionary genetics | Historical buildings | Biodiversity | Data bases | Proteins | Crustaceans | Eukaryotes | Annotations | Reproduction (copying) | Evolutionary conservation | Phylogenetics | Bioinformatics | Arachnids | Polyploidy | Ecological adaptation | Crabs | Gene expression | Vertebrates | Biological Sciences | Naturvetenskap | Biologiska vetenskaper | Natural Sciences
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