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1. Full Text Pilon: An integrated tool for comprehensive microbial variant detection and genome assembly improvement
by Walker, Bruce J and Abeel, Thomas and Shea, Terrance and Priest, Margaret and Abouelliel, Amr and Sakthikumar, Sharadha and Cuomo, Christina A and Zeng, Qiandong and Wortman, Jennifer and Young, Sarah K and Earl, Ashlee M
PloS one, ISSN 1932-6203, 11/2014, Volume 9, Issue 11, pp. e112963 - e112963
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Genetic Variation | Genome, Bacterial | Algorithms | Bacteria - classification | Molecular Sequence Data | Software | Bacteria - genetics | Sequence Analysis, DNA - methods | Automation | Integrated software | Genomics | Data processing | Genomes | Gene sequencing | Streptococcus infections | Microorganisms | Tuberculosis | Production methods | Bacteria | Inserts | Assemblies | Bioinformatics | Index Medicus
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2. Full Text Fap2 Mediates Fusobacterium nucleatum Colorectal Adenocarcinoma Enrichment by Binding to Tumor-Expressed Gal-GalNAc
by Abed, Jawad and Emgård, Johanna E.M and Zamir, Gideon and Faroja, Mouhammad and Almogy, Gideon and Grenov, Amalie and Sol, Asaf and Naor, Ronit and Pikarsky, Eli and Atlan, Karine A and Mellul, Anna and Chaushu, Stella and Manson, Abigail L and Earl, Ashlee M and Ou, Nora and Brennan, Caitlin A and Garrett, Wendy S and Bachrach, Gilad
Cell host & microbe, ISSN 1931-3128, 08/2016, Volume 20, Issue 2, pp. 215 - 225
Parasitology | Life Sciences & Biomedicine | Microbiology | Science & Technology | Virology | Adenocarcinoma - pathology | Epithelial Cells - metabolism | Adenocarcinoma - microbiology | Humans | Bacterial Adhesion | Host-Pathogen Interactions | Adhesins, Bacterial - metabolism | Lectins - metabolism | Antigens, Tumor-Associated, Carbohydrate - metabolism | Animals | Models, Biological | Colonic Neoplasms - pathology | Epithelial Cells - microbiology | Cell Line, Tumor | Protein Binding | Mice, Inbred BALB C | Fusobacterium nucleatum - physiology | Colonic Neoplasms - microbiology | Disease Models, Animal | Medical colleges | Polysaccharides | Colon cancer | Analysis | Gastrointestinal diseases | Lectins | Jewish schools | Research institutes | Gram-negative bacteria | Tumors | Index Medicus
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3. Full Text Extensive global movement of multidrug-resistant M. tuberculosis strains revealed by whole-genome analysis
by Cohen, Keira A and Manson, Abigail L and Abeel, Thomas and Desjardins, Christopher A and Chapman, Sinead B and Hoffner, Sven and Birren, Bruce W and Earl, Ashlee M
Thorax, ISSN 0040-6376, 09/2019, Volume 74, Issue 9, pp. 882 - 889
clinical epidemiology | tuberculosis | Life Sciences & Biomedicine | Respiratory System | Science & Technology | Global Health | Molecular Epidemiology | Tuberculosis, Multidrug-Resistant - microbiology | Humans | Tuberculosis, Multidrug-Resistant - genetics | Phylogeny | Mycobacterium tuberculosis - genetics | Whole Genome Sequencing | Studies | Multidrug resistant organisms | Tuberculosis | Phylogenetics | Genomes | Mutation | Drug resistance
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4. Full Text Structure, function and diversity of the healthy human microbiome
by Huttenhower, Curtis and Gevers, Dirk and Knight, Rob and Abubucker, Sahar and Badger, Jonathan H and Chinwalla, Asif T and Creasy, Heather H and Earl, Ashlee M and Fitzgerald, Michael G and Fulton, Robert S and Giglio, Michelle G and Hallsworth-Pepin, Kymberlie and Lobos, Elizabeth A and Madupu, Ramana and Magrini, Vincent and Martin, John C and Mitreva, Makedonka and Muzny, Donna M and Sodergren, Erica J and Versalovic, James and Wollam, Aye M and Worley, Kim C and Wortman, Jennifer R and Young, Sarah K and Zeng, Qiandong and Aagaard, Kjersti M and Abolude, Olukemi O and Allen-Vercoe, Emma and Alm, Eric J and Alvarado, Lucia and Andersen, Gary L and Anderson, Scott and Appelbaum, Elizabeth and Arachchi, Harindra M and Armitage, Gary and Arze, Cesar A and Ayvaz, Tulin and Baker, Carl C and Begg, Lisa and Belachew, Tsegahiwot and Bhonagiri, Veena and Bihan, Monika and Blaser, Martin J and Bloom, Toby and Bonazzi, Vivien and Paul Brooks, J and Buck, Gregory A and Buhay, Christian J and Busam, Dana A and Campbell, Joseph L and Canon, Shane R and Cantarel, Brandi L and Chain, Patrick S. G and Chen, I-Min A and Chen, Lei and Chhibba, Shaila and Chu, Ken and Ciulla, Dawn M and Clemente, Jose C and Clifton, Sandra W and Conlan, Sean and Crabtree, Jonathan and Cutting, Mary A and Davidovics, Noam J and Davis, Catherine C and Desantis, Todd Z and Deal, Carolyn and Delehaunty, Kimberley D and Dewhirst, Floyd E and Deych, Elena and Ding, Yan and Dooling, David J and Dugan, Shannon P and Michael Dunne, Wm and Scott Durkin, A and Edgar, Robert C and Erlich, Rachel L and Farmer, Candace N and Farrell, Ruth M and Faust, Karoline and Feldgarden, Michael and Felix, Victor M and Fisher, Sheila and Fodor, Anthony A and Forney, Larry J and Foster, Leslie and Di Francesco, Valentina and Friedman, Jonathan and Friedrich, Dennis C and Fronick, Catrina C and Fulton, Lucinda L and Gao, Hongyu and Garcia, Nathalia and Giannoukos, Georgia and Giblin, Christina and Giovanni, Maria Y and Goldberg, Jonathan M and Goll, Johannes and Gonzalez, Antonio and Griggs, Allison and ... and Human Microbiome Project Consortiu and Human Microbiome Project Consortium and The Human Microbiome Project Consortium and Joint Genome Institute (JGI)
Nature (London), ISSN 0028-0836, 06/2012, Volume 486, Issue 7402, pp. 207 - 214
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Morphology, structure, chemical composition | Microbiology | Bacteriology | Metagenomics | Health | Humans | Male | Biodiversity | Bacteria - genetics | Young Adult | Phenotype | Ecosystem | Adolescent | Bacteria - classification | RNA, Ribosomal, 16S - genetics | Adult | Female | Metabolic Networks and Pathways - physiology | Metagenome | Microbiota (Symbiotic organisms) | Research | Biological diversity | Disease | Habitats | Taxonomy | Data processing | Skin | Life sciences | Genomes | Index Medicus
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5. Full Text Bacillus subtilis Genome Diversity
by Ashlee M. Earl and Richard Losick and Roberto Kolter
Journal of Bacteriology, ISSN 0021-9193, 02/2007, Volume 189, Issue 3, pp. 1163 - 1170
Life Sciences & Biomedicine | Microbiology | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Miscellaneous | Bacteriology | Genetic Variation | Nucleic Acid Hybridization - methods | Genes, Bacterial | Genome, Bacterial | Oligonucleotide Array Sequence Analysis | Species Specificity | Bacterial Proteins - genetics | Phylogeny | Bacillus subtilis - genetics | Genetic aspects | Research | Bacillus subtilis | Identification and classification | Biological diversity | Proteins | Genetic diversity | Gene loci | Genomics | Index Medicus | Genomics and Proteomics
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6. Full Text A framework for human microbiome research
by Methé, Barbara A and Nelson, Karen E and Pop, Mihai and Creasy, Heather H and Giglio, Michelle G and Huttenhower, Curtis and Gevers, Dirk and Petrosino, Joseph F and Abubucker, Sahar and Badger, Jonathan H and Chinwalla, Asif T and Earl, Ashlee M and Fitzgerald, Michael G and Fulton, Robert S and Hallsworth-Pepin, Kymberlie and Lobos, Elizabeth A and Madupu, Ramana and Magrini, Vincent and Martin, John C and Mitreva, Makedonka and Muzny, Donna M and Sodergren, Erica J and Versalovic, James and Wollam, Aye M and Worley, Kim C and Wortman, Jennifer R and Young, Sarah K and Zeng, Qiandong and Aagaard, Kjersti M and Abolude, Olukemi O and Allen-Vercoe, Emma and Alm, Eric J and Alvarado, Lucia and Andersen, Gary L and Anderson, Scott and Appelbaum, Elizabeth and Arachchi, Harindra M and Armitage, Gary and Arze, Cesar A and Ayvaz, Tulin and Baker, Carl C and Begg, Lisa and Belachew, Tsegahiwot and Bhonagiri, Veena and Bihan, Monika and Blaser, Martin J and Bloom, Toby and Bonazzi, Vivien R and Brooks, Paul and Buck, Gregory A and Buhay, Christian J and Busam, Dana A and Campbell, Joseph L and Canon, Shane R and Cantarel, Brandi L and Chain, Patrick S and Chen, I-Min A and Chen, Lei and Chhibba, Shaila and Chu, Ken and Ciulla, Dawn M and Clemente, Jose C and Clifton, Sandra W and Conlan, Sean and Crabtree, Jonathan and Cutting, Mary A and Davidovics, Noam J and Davis, Catherine C and Desantis, Todd Z and Deal, Carolyn and Delehaunty, Kimberley D and Dewhirst, Floyd E and Deych, Elena and Ding, Yan and Dooling, David J and Dugan, Shannon P and Michael Dunne, W and Scott Durkin, A and Edgar, Robert C and Erlich, Rachel L and Farmer, Candace N and Farrell, Ruth M and Faust, Karoline and Feldgarden, Michael and Felix, Victor M and Fisher, Sheila and Fodor, Anthony A and Forney, Larry and Foster, Leslie and Di Francesco, Valentina and Friedman, Jonathan and Friedrich, Dennis C and Fronick, Catrina C and Fulton, Lucinda L and Gao, Hongyu and Garcia, Nathalia and Giannoukos, Georgia and Giblin, Christina and Giovanni, Maria Y and Goldberg, Jonathan M and ... and Human Microbiome Project Consortiu and Human Microbiome Project Consortium and The Human Microbiome Project Consortium and Joint Genome Institute (JGI)
Nature (London), ISSN 0028-0836, 06/2012, Volume 486, Issue 7402, pp. 215 - 221
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Morphology, structure, chemical composition | Microbiology | Bacteriology | Young Adult | Reference Standards | Humans | Adolescent | Metagenomics - methods | RNA, Ribosomal, 16S - genetics | Adult | Female | Male | Statistics as Topic | Bacteria - genetics | Metagenome | Genetic research | Microbiological research | Genomes | Research | Microbiota (Symbiotic organisms) | Studies | Medicine | Publications | Taxonomy | Genomics | Data processing | Manuscripts | Index Medicus
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7. Full Text Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance
by Manson, Abigail L and Cohen, Keira A and Abeel, Thomas and Desjardins, Christopher A and Armstrong, Derek T and Barry, Clifton E and Brand, Jeannette and Chapman, Sinéad B and Cho, Sang-Nae and Gabrielian, Andrei and Gomez, James and Jodals, Andreea M and Joloba, Moses and Jureen, Pontus and Lee, Jong Seok and Malinga, Lesibana and Maiga, Mamoudou and Nordenberg, Dale and Noroc, Ecaterina and Romancenco, Elena and Salazar, Alex and Ssengooba, Willy and Velayati, A.A and Winglee, Kathryn and Zalutskaya, Aksana and Via, Laura E and Cassell, Gail H and Dorman, Susan E and Ellner, Jerrold and Farnia, Parissa and Galagan, James E and Rosenthal, Alex and Crudu, Valeriu and Homorodean, Daniela and Hsueh, Po-Ren and Narayanan, Sujatha and Pym, Alexander S and Skrahina, Alena and Swaminathan, Soumya and Van Der Walt, Martie and Alland, David and Bishai, William R and Cohen, Ted and Hoffner, Sven and Birren, Bruce W and Earl, Ashlee M and TBresist Global Genome Consortium and TBResist Global Genome Consortium
Nature genetics, ISSN 1061-4036, 03/2017, Volume 49, Issue 3, pp. 395 - 402
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Catalase - genetics | Humans | Bacterial Proteins - genetics | Tuberculosis, Multidrug-Resistant - genetics | Mutation - genetics | Mycobacterium tuberculosis - drug effects | Isoniazid - therapeutic use | Polymorphism, Genetic - genetics | Rifampin - therapeutic use | Drug Resistance, Multiple, Bacterial - genetics | Genomics - methods | Antitubercular Agents - therapeutic use | Mycobacterium tuberculosis - genetics | Tuberculosis, Multidrug-Resistant - drug therapy | Drug resistance in microorganisms | Genotype | Genome-wide association studies | Genetic aspects | Mycobacterium tuberculosis | Health aspects | Geography | Consortia | Datasets | Epidemics | Tuberculosis | Genomes | Mutation | Drug resistance | Index Medicus | Medicin och hälsovetenskap
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