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1. Full Text A simple, fast, and accurate method of phylogenomic inference
by Wu, Martin and Eisen, Jonathan A and Joint Genome Institute (JGI)
Genome Biology, ISSN 1474-7596, 10/2008, Volume 9, Issue 10, pp. R151 - R151
Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Databases, Genetic | Genome, Bacterial | Sequence Alignment | Phylogeny | Genomics - methods | Index Medicus | Method
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2. Full Text Multisociety guideline on reprocessing flexible GI endoscopes: 2016 update
by Petersen, Bret T., MD, FASGE and Cohen, Jonathan, MD, FASGE and Hambrick, Ralph David, RN and Buttar, Navtej, MD and Greenwald, David A., MD, FASGE and Buscaglia, Jonathan M., MD, FASGE and Collins, James, RN and Eisen, Glenn, MD, MPH, FASGE and Reprocessing Guideline Task Force
Gastrointestinal endoscopy, ISSN 0016-5107, 2017, Volume 85, Issue 2, pp. 282 - 294.e1
Gastroenterology and Hepatology | Gastroenterology & Hepatology | Life Sciences & Biomedicine | Science & Technology | Disinfection - standards | Equipment Contamination - prevention & control | Endoscopes | Societies, Medical | Endoscopes, Gastrointestinal | Humans | Equipment Reuse - standards | Sterilization - standards | Endoscopy, Digestive System - instrumentation | Index Medicus
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3. Full Text Acidithiobacillus ferrooxidans metabolism: From genome sequence to industrial applications
by Valdés, Jorge and Pedroso, Inti and Quatrini, Raquel and Dodson, Robert J and Tettelin, Herve and Blake II, Robert and Eisen, Jonathan A and Holmes, David S and Joint Genome Institute (JGI)
BMC genomics, ISSN 1471-2164, 12/2008, Volume 9, Issue 1, pp. 597 - 597
Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Genes, Bacterial | Industrial Microbiology | Genome, Bacterial | Multigene Family | Acidithiobacillus - genetics | Computational Biology | Molecular Sequence Data | Acidithiobacillus - metabolism | Genetic research | Evaluation | Gram-negative bacteria | Research | Nucleotide sequence | Index Medicus
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4. Full Text Insights into the phylogeny and coding potential of microbial dark matter
by Rinke, Christian and Schwientek, Patrick and Sczyrba, Alexander and Ivanova, Natalia N and Anderson, Iain J and Cheng, Jan-Fang and Darling, Aaron and Malfatti, Stephanie and Swan, Brandon K and Gies, Esther A and Dodsworth, Jeremy A and Hedlund, Brian P and Tsiamis, George and Sievert, Stefan M and Liu, Wen-Tso and Eisen, Jonathan A and Hallam, Steven J and Kyrpides, Nikos C and Stepanauskas, Ramunas and Rubin, Edward M and Hugenholtz, Philip and Woyke, Tanja and Joint Genome Institute (JGI)
Nature (London), ISSN 0028-0836, 2013, Volume 499, Issue 7459, pp. 431 - 437
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Metagenomics | Bacteria - metabolism | Molecular Sequence Data | Archaea - isolation & purification | Phylogeny | Archaea - classification | Bacteria - genetics | Sequence Analysis, DNA | Genome, Bacterial - genetics | Archaea - metabolism | Bacteria - isolation & purification | Metagenome - genetics | Ecosystem | Genome, Archaeal - genetics | Bacteria - classification | Archaea - genetics | Single-Cell Analysis | Biosphere | Usage | Research | Nucleotide sequencing | DNA sequencing | Trees | Evolution | Microbiology | Genomics | Genes | Index Medicus
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5. Full Text Yeast Communities of Diverse Drosophila Species: Comparison of Two Symbiont Groups in the Same Hosts
by James Angus Chandler and Jonathan A. Eisen and Artyom Kopp
Applied and Environmental Microbiology, ISSN 0099-2240, 10/2012, Volume 78, Issue 20, pp. 7327 - 7336
Life Sciences & Biomedicine | Microbiology | Biotechnology & Applied Microbiology | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Symbiosis | Yeasts - classification | Ascomycota - isolation & purification | Ascomycota - physiology | DNA, Fungal - genetics | United States | Molecular Sequence Data | DNA, Fungal - chemistry | Biodiversity | Sequence Analysis, DNA | Drosophila - microbiology | Yeasts - physiology | Bacteria - isolation & purification | Animals | Bacteria - classification | Yeasts - isolation & purification | Ascomycota - classification | Proteins | Drosophila | Analysis | Genetic populations | Physiological aspects | Genetic aspects | Research | Structure | Yeast | Insects | Animal behavior | Physiology | Ecology | Comparative analysis | Index Medicus | Invertebrate Microbiology
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6. Full Text PhyloSift: Phylogenetic analysis of genomes and metagenomes
by Darling, Aaron E and Jospin, Guillaume and Lowe, Eric and Matsen, Frederick A and Bik, Holly M and Eisen, Jonathan A
PeerJ (San Francisco, CA), ISSN 2167-8359, 2014, Volume 2014, Issue 1, pp. e243 - e243
Community structure | Metagenomics | Forensics | Microbial diversity | Microbial ecology | Phylogenetics | Edge PCA | Bayes factor | Phylogenetic diversity | Microbial evolution | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Public software | Microbiology | RNA | Genomics | Evolution | Nucleotide sequencing | Phylogeny | DNA sequencing | Hypothesis testing | Medical research | Forensic science | Nucleotide sequence | Taxonomy | Ecology | Genomes | Ribonucleic acid--RNA | Studies | Molecular evolution | Bayesian analysis | Bioinformatics | Deoxyribonucleic acid--DNA | Methods
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7. Full Text Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment
by Castelle, Cindy J and Hug, Laura A and Wrighton, Kelly C and Thomas, Brian C and Williams, Kenneth H and Wu, Dongying and Tringe, Susannah G and Singer, Steven W and Eisen, Jonathan A and Banfield, Jillian F and Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Nature communications, ISSN 2041-1723, 2013, Volume 4, Issue 1, pp. 2120 - 2120
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Bacteria - metabolism | Catalytic Domain | Oxidoreductases - metabolism | Molecular Sequence Data | Phylogeny | Groundwater - microbiology | Bacteria - genetics | Ribosomal Proteins - metabolism | Genetic Variation | Genome, Bacterial - genetics | Geologic Sediments - microbiology | Likelihood Functions | Energy Metabolism | Bacteria - classification | Iron-Sulfur Proteins - metabolism | Index Medicus
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