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animals (48) 48
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1. Full Text A biodiversity hotspot losing its top predator: The challenge of jaguar conservation in the Atlantic Forest of South America
by Paviolo, Agustin and De Angelo, Carlos and Ferraz, Katia M. P. M. B and Morato, Ronaldo G and Martinez Pardo, Julia and Srbek-Araujo, Ana C and Beisiegel, Beatriz De Mello and Lima, Fernando and Sana, Denis and Xavier Da Silva, Marina and Velázquez, Myriam C and Cullen, Laury and Crawshaw, Peter and Jorge, María Luisa S. P and Galetti, Pedro M and Di Bitetti, Mario S and De Paula, Rogerio Cunha and Eizirik, Eduardo and Aide, T. Mitchell and Cruz, Paula and Perilli, Miriam L. L and Souza, Andiara S. M. C and Quiroga, Verónica and Nakano, Eduardo and Ramírez Pinto, Fredy and Fernández, Sixto and Costa, Sebastian and Moraes, Edsel A and Azevedo, Fernando
Scientific Reports, ISSN 2045-2322, 11/2016, Volume 6, Issue 1, p. 37147
The jaguar is the top predator of the Atlantic Forest (AF), which is a highly threatened biodiversity hotspot that occurs in Brazil, Paraguay and Argentina. By... 
PROTECTED AREAS | CAMERA-TRAPS | DENSITY | PUMAS PUMA-CONCOLOR | LANDSCAPE | HABITAT FRAGMENTATION | MULTIDISCIPLINARY SCIENCES | SPECIES DISTRIBUTIONS | PANTHERA-ONCA | POPULATIONS | CARNIVORES | South America | Forests | Animals | Biodiversity | Panthera - physiology | Population Dynamics | Population status | Spatial discrimination | Conservation | Biological diversity
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2. Full Text Impacts of the Cretaceous Terrestrial Revolution and KPg Extinction on Mammal Diversification
by Robert W. Meredith and Jan E. Janečka and John Gatesy and Oliver A. Ryder and Colleen A. Fisher and Emma C. Teeling and Alisha Goodbla and Eduardo Eizirik and Taiz L. L. Simão and Tanja Stadler and Daniel L. Rabosky and Rodney L. Honeycutt and John J. Flynn and Colleen M. Ingram and Cynthia Steiner and Tiffani L. Williams and Terence J. Robinson and Angela Burk-Herrick and Michael Westerman and Nadia A. Ayoub and Mark S. Springer and William J. Murphy
Science, ISSN 0036-8075, 10/2011, Volume 334, Issue 6055, pp. 521 - 524
Previous analyses of relations, divergence times, and diversification patterns among extant mammalian families have relied on supertree methods and local... 
Mass extinction events | Rodents | REPORTS | Phylogenetics | Amino acids | Biology | Phylogeny | Mammals | Research universities | We they distinction | Fossils | BIODIVERSITY | EVOLUTION | PLACENTAL MAMMALS | SEQUENCES | MULTIDISCIPLINARY SCIENCES | GENES | BOUNDARY | DIVERGENCE | PHYLOGENETIC TREES | Biological Evolution | Mammals - genetics | Mammals - classification | Animals | Molecular Sequence Data | Extinction, Biological | Evolution, Molecular | Mass extinction theory | Research | Biological diversity | Genetic diversity | Evolutionary biology
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3. Full Text Recombination-Aware Phylogenomics Reveals the Structured Genomic Landscape of Hybridizing Cat Species
by Li, Gang and Figueiró, Henrique V and Eizirik, Eduardo and Murphy, William J
Molecular Biology and Evolution, ISSN 0737-4038, 10/2019, Volume 36, Issue 10, pp. 2111 - 2126
Abstract Current phylogenomic approaches implicitly assume that the predominant phylogenetic signal within a genome reflects the true evolutionary history of... 
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4. Full Text The Late Miocene Radiation of Modern Felidae: A Genetic Assessment
by Warren E. Johnson and Eduardo Eizirik and Jill Pecon-Slattery and William J. Murphy and Agostinho Antunes and Emma Teeling and Stephen J. O'Brien
Science, ISSN 0036-8075, 1/2006, Volume 311, Issue 5757, pp. 73 - 77
Modern felid species descend from relatively recent (<11 million years ago) divergence and speciation events that produced successful predatory carnivores... 
Biological taxonomies | Cats | Lynx | Divergent evolution | Phylogenetics | Evolutionary genetics | Reports | Mitochondrial DNA | Sea level | Fossils | Animal migration behavior | PHYLOGENY | CHRONOLOGY | MITOCHONDRIAL-DNA | CARNIVORA | MULTIDISCIPLINARY SCIENCES | GENOME | Americas | Felidae - genetics | Genes | Cats - genetics | Phylogeny | Y Chromosome - genetics | Felis - classification | Cats - classification | DNA, Mitochondrial - genetics | Lynx - classification | Genetic Speciation | Lynx - genetics | Panthera - genetics | X Chromosome - genetics | Panthera - classification | Europe | Africa | Puma - genetics | Puma - classification | Biological Evolution | DNA - genetics | Animals | Felis - genetics | Asia | Felidae - classification | Genetics | Carnivora | Research | Felidae | Analysis
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5. Full Text Placental Mammal Diversification and the Cretaceous-Tertiary Boundary
by Mark S. Springer and William J. Murphy and Eduardo Eizirik and Stephen J. O'Brien
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 2/2003, Volume 100, Issue 3, pp. 1056 - 1061
Competing hypotheses for the timing of the placental mammal radiation focus on whether extant placental orders originated and diversified before or after the... 
Datasets | Taxa | Biological Sciences | Body size | Rodents | Primates | Explosives | Mammals | Codons | Estimated taxes | Fossils | Placentalia | Mammalia | Phylogeny | Molecular clock | MOLECULAR EVIDENCE | TIMESCALE | MULTIDISCIPLINARY SCIENCES | TIME | RADIATION | ECHOLOCATION | EUTHERIAN MAMMALS | ORIGINS | molecular clock | EVOLUTION | placentalia | phylogeny | PHYLOGENETICS | FOSSIL RECORD | mammalia | Mammals - classification | DNA, Mitochondrial - metabolism | Rats | Biological Evolution | Animals | Cell Nucleus - metabolism | Time Factors | Classification | Mice | Monte Carlo Method | Evolution, Molecular | Usage | Animals, Fossil | Cladistic analysis | Rattus | Physiological aspects | Evolution | Genetic aspects | Research | Natural history | Mammalia‖molecular clock‖Placentalia‖phylogeny
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6. Full Text Phylogenomic evidence for ancient hybridization in the genomes of living cats (Felidae)
by Li, Gang and Davis, Brian W and Eizirik, Eduardo and Murphy, William J
Genome Research, ISSN 1088-9051, 01/2016, Volume 26, Issue 1, pp. 1 - 11
Inter-species hybridization has been recently recognized as potentially common in wild animals, but the extent to which it shapes modern genomes is still... 
MITOCHONDRIAL | BIOCHEMISTRY & MOLECULAR BIOLOGY | CANADA LYNX | RADIATION HYBRID | GENE FLOW | INTROGRESSION | EVOLUTION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | SEQUENCE | GENETICS & HEREDITY | DOMESTIC CATS | COMPLEX SPECIATION | REVEALS | Cats | Felidae - genetics | Genetic Association Studies | Chromosomes, Mammalian - genetics | Gene Flow | Male | Phylogeny | Sex Chromosomes | Genotyping Techniques | Genetic Variation | Sequence Alignment | Animals | Hybridization, Genetic | Genetic Speciation | Female | Polymorphism, Single Nucleotide | Genome, Mitochondrial | Genetic variation | Analysis | Genetic aspects | Genomes | Research | Single nucleotide polymorphisms | Felidae
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7. Full Text The late miocene radiation of modern felidae: A genetic assesstment
by Johnson, Warren E and Eizirik, Eduardo and Pecon-Slattery, Jill and Murphy, William J and Antunes, Agostinho and Teeling, Emma and O'Brien, Stephen J
Science, ISSN 0036-8075, 01/2006, Volume 311, Issue 5757, pp. 73 - 77
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8. Full Text Molecular phylogenetics and the origins of placental mammals
by Murphy, William J and Ryder, Oliver A and Zhang, Ya Ping and Johnson, Warren E and O'Brien, Stephen J and Eizirik, Eduardo
Nature, ISSN 0028-0836, 02/2001, Volume 409, Issue 6820, pp. 614 - 618
The precise hierarchy of ancient divergence events that led to the present assemblage of modern placental mammals has been an area of controversy among... 
TREE TOPOLOGIES | ORDER | POSITION | EVOLUTION | ENDEMIC AFRICAN MAMMALS | MULTIDISCIPLINARY SCIENCES | Mammals - genetics | Mammals - classification | Animals | Placenta | Humans | Molecular Sequence Data | Phylogeny | Genetics | Evolution | Mammals | Molecular biology
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9. Full Text Molecular ecology of the Neotropical otter (Lontra longicaudis): non‐invasive sampling yields insights into local population dynamics
by Trinca, Cristine Silveira and Jaeger, Camila Fernandes and Eizirik, Eduardo
Biological Journal of the Linnean Society, ISSN 0024-4066, 08/2013, Volume 109, Issue 4, pp. 932 - 948
Non‐invasive genetic analysis has been frequently employed to estimate ecological and population parameters for many secretive and/or threatened species.... 
microsatellites | faecal DNA | density | size | kinship | carnivore | Mustelidae | philopatry | monitoring | conservation genetics | Faecal DNA | Microsatellites | Size | Kinship | Philopatry | Density | Carnivore | Conservation genetics | Monitoring | NATURAL-POPULATIONS | VALDEZ OIL-SPILL | GENOTYPING ERRORS | SPATIAL-ORGANIZATION | HABITAT SELECTION | EVOLUTIONARY BIOLOGY | RIVER OTTERS | INDIVIDUAL IDENTIFICATION | FECAL DNA | LUTRA-LUTRA | EURASIAN OTTER | Endangered species | Analysis
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10. Full Text Resolution of the Early Placental Mammal Radiation Using Bayesian Phylogenetics
by William J. Murphy and Eduardo Eizirik and Stephen J. O'Brien and Ole Madsen and Mark Scally and Christophe J. Douady and Emma Teeling and Oliver A. Ryder and Michael J. Stanhope and Wilfried W. de Jong and Mark S. Springer
Science, ISSN 0036-8075, 12/2001, Volume 294, Issue 5550, pp. 2348 - 2351
Molecular phylogenetic studies have resolved placental mammals into four major groups, but have not established the full hierarchy of interordinal... 
Datasets | Taxa | Shrews | Plant roots | Phylogenetics | Evolution | Reports | Plants | Mammals | Fossils | Estimation methods | EVOLUTION | TREES | SEQUENCES | MULTIDISCIPLINARY SCIENCES | Mammals - genetics | South America | Mammals - classification | Markov Chains | Marsupialia - genetics | Genes | Africa | Probability | Phylogeny | Sequence Analysis, DNA | Biological Evolution | Likelihood Functions | Animals | Marsupialia - classification | Placenta | Base Pairing | Cell Nucleus - genetics | Mitochondria - genetics | Ecosystem | Bayes Theorem | Genes, rRNA | Monte Carlo Method | Bayesian statistical decision theory | Usage | Genetic aspects | Models | Eutheria | Genetics | Bayesian analysis | Plate tectonics
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11. Full Text Mapping black panthers: Macroecological modeling of melanism in leopards (Panthera pardus)
by Da Silva, Lucas G and Kawanishi, Kae and Henschel, Philipp and Kittle, Andrew and Sanei, Arezoo and Reebin, Alexander and Miquelle, Dale and Stein, Andrew B and Watson, Anjali and Kekule, Laurence Bruce and MacHado, Ricardo B and Eizirik, Eduardo
PLoS ONE, ISSN 1932-6203, 04/2017, Volume 12, Issue 4, p. e0170378
The geographic distribution and habitat association of most mammalian polymorphic phenotypes are still poorly known, hampering assessments of their adaptive... 
EVOLUTION | GENETICS | MULTIDISCIPLINARY SCIENCES | NATURAL-SELECTION | HABITAT | CAT | NICHE | COLOR VARIATION | Biological Evolution | Conservation of Natural Resources - methods | Phenotype | Animals | Animal Distribution - physiology | Ecosystem | Selection, Genetic - physiology | Ecology | Panthera - physiology | Physiological aspects | Leopard | Analysis | Macroecology | Melanism (Evolutionary adaptation) | Geographical distribution | Phenotypes | Wildlife conservation | Habitats | Phylogeography | New records | Color | Melanism | Adaptiveness | Biogeography | Thermoregulation | Mapping | Natural selection | Studies | Endangered & extinct species | Genotype & phenotype | Hypotheses | Spatial distribution | Algorithms | Vegetation type | Camouflage | Modelling | Coloration
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12. Full Text Specifying and Sustaining Pigmentation Patterns in Domestic and Wild Cats
by Christopher B. Kaelin and Xiao Xu and Lewis Z. Hong and Victor A. David and Kelly A. McGowan and Anne Schmidt-Küntzel and Melody E. Roelke and Javier Pino and Joan Pontius and Gregory M. Cooper and Hermogenes Manuel and William F. Swanson and Laurie Marker and Cindy K. Harper and Ann van Dyk and Bisong Yue and James C. Mullikin and Wesley C. Warren and Eduardo Eizirik and Lidia Kos and Stephen J. O'Brien and Gregory S. Barsh and Marilyn Menotti-Raymond
Science, ISSN 0036-8075, 9/2012, Volume 337, Issue 6101, pp. 1536 - 1541
Color markings among felid species display both a remarkable diversity and a common underlying periodicity. A similar range of patterns in domestic cats... 
Hair | Cats | Phenotypes | Messenger RNA | REPORTS | Alleles | Cheetahs | Melanocytes | Stripes | Skin | Hair follicles | GENETICS | MULTIDISCIPLINARY SCIENCES | SKIN COLOR | MODEL | COAT COLOR | EXPRESSION | FAMILY | Haplotypes | Cats - embryology | Felidae - genetics | Species Specificity | Skin - metabolism | Hair Color - genetics | Endothelin-3 - genetics | Acinonyx - genetics | Cats - genetics | Metalloproteases - metabolism | Genetic Variation | Acinonyx - metabolism | Aminopeptidases - chemistry | Panthera - genetics | Felidae - growth & development | Hair Follicle - embryology | Aminopeptidases - metabolism | Cats - growth & development | Metalloproteases - chemistry | Endothelin-3 - metabolism | Skin - embryology | Aminopeptidases - genetics | Felidae - metabolism | Skin - anatomy & histology | Gene Frequency | Gene Expression Regulation | Metalloproteases - genetics | Mice, Transgenic | Hair - embryology | Phenotype | Animals | Cats - metabolism | Epistasis, Genetic | Panthera - metabolism | Mice | Polymorphism, Single Nucleotide | Hair - growth & development | Fur | Genetic aspects | Properties | Identification and classification | Aminopeptidases | Pigments | Genotype & phenotype | Animal populations | Regulators | Genes | Domestic | Color | Coating | Mammals
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13. Full Text The Adequacy of Morphology for Reconstructing the Early History of Placental Mammals
by Mark S. Springer and Angela Burk-Herrick and Robert Meredith and Eduardo Eizirik and Emma Teeling and Stephen J. O'Brien and William J. Murphy
Systematic Biology, ISSN 1063-5157, 8/2007, Volume 56, Issue 4, pp. 673 - 684
Gunnell and Simmons (2005) provide a cogent ecological explanation: that morphological similarities shared by these taxa were derived independently due to the... 
Datasets | Taxa | Animal morphology | Parsimony | Plant morphology | Phylogenetics | Points of View | Phylogeny | Mammals | Bayesian analysis | Fossils | EVOLUTIONARY BIOLOGY | ORIGIN | SEQUENCES | MODELS | PHYLOGENY RECONSTRUCTION | NUCLEAR GENES | MITOCHONDRIAL | TREE | CLADE | AFROTHERIA | RADIATION | Biological Evolution | Mammals - genetics | Data Interpretation, Statistical | Mammals - classification | Animals | Extinction, Biological | Mammals - anatomy & histology | Changes | Problems | Genetic engineering
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