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Journal Article
by Menden, Michael P and Wang, Dennis and Mason, Mike J and Szalai, Bence and Bulusu, Krishna C and Guan, Yuanfang and Yu, Thomas and Kang, Jaewoo and Jeon, Minji and Wolfinger, Russ and Nguyen, Tin and Zaslavskiy, Mikhail and Abante, Jordi and Abecassis, Barbara Schmitz and Aben, Nanne and Aghamirzaie, Delasa and Aittokallio, Tero and Akhtari, Farida S and Al-lazikani, Bissan and Alam, Tanvir and Allam, Amin and Allen, Chad and de Almeida, Mariana Pelicano and Altarawy, Doaa and Alves, Vinicius and Amadoz, Alicia and Anchang, Benedict and Antolin, Albert A and Ash, Jeremy R and Aznar, Victoria Romeo and Ba-alawi, Wail and Bagheri, Moeen and Bajic, Vladimir and Ball, Gordon and Ballester, Pedro J and Baptista, Delora and Bare, Christopher and Bateson, Mathilde and Bender, Andreas and Bertrand, Denis and Wijayawardena, Bhagya and Boroevich, Keith A and Bosdriesz, Evert and Bougouffa, Salim and Bounova, Gergana and Brouwer, Thomas and Bryant, Barbara and Calaza, Manuel and Calderone, Alberto and Calza, Stefano and Capuzzi, Stephen and Carbonell-Caballero, Jose and Carlin, Daniel and Carter, Hannah and Castagnoli, Luisa and Celebi, Remzi and Cesareni, Gianni and Chang, Hyeokyoon and Chen, Guocai and Chen, Haoran and Chen, Huiyuan and Cheng, Lijun and Chernomoretz, Ariel and Chicco, Davide and Cho, Kwang-Hyun and Cho, Sunghwan and Choi, Daeseon and Choi, Jaejoon and Choi, Kwanghun and Choi, Minsoo and Cock, Martine De and Coker, Elizabeth and Cortes-Ciriano, Isidro and Cserzö, Miklós and Cubuk, Cankut and Curtis, Christina and Daele, Dries Van and Dang, Cuong C and Dijkstra, Tjeerd and Dopazo, Joaquin and Draghici, Sorin and Drosou, Anastasios and Dumontier, Michel and Ehrhart, Friederike and Eid, Fatma-Elzahraa and ElHefnawi, Mahmoud and Elmarakeby, Haitham and van Engelen, Bo and Engin, Hatice Billur and de Esch, Iwan and Evelo, Chris and Falcao, Andre O and Farag, Sherif and Fernandez-Lozano, Carlos and Fisch, Kathleen and Flobak, Asmund and Fornari, Chiara and Foroushani, Amir B. K and Fotso, Donatien Chedom and Fourches, Denis and ... and AstraZeneca-Sanger Drug Combinatio and AstraZeneca-Sanger Drug Combination DREAM Consortium
Nature Communications, ISSN 2041-1723, 12/2019, Volume 10, Issue 1, pp. 2674 - 17
Journal Article
The Plant Journal, ISSN 0960-7412, 01/2016, Volume 85, Issue 2, pp. 305 - 319
Journal Article
Frontiers in Plant Science, ISSN 1664-462X, 12/2016, Volume 7, Issue 2016, pp. 1936 - 1936
Gene regulatory networks (GRNs) provide a representation of relationships between regulators and their target genes. Several methods for GRN inference, both... 
Support vector machines | Gene regulatory network | Cluster | Binding site | Gene expression | Arabidopsis | cluster | support vector machines | INFORMATION | INFERENCE | IDENTIFICATION | gene regulatory network | PLANT SCIENCES | EMBRYO | LIMMA | LAFL | TARGETS | gene expression | binding site | REVEALS | Embryonic development | Reorganization and restructuring | Machine learning | Genetic aspects | Research | Methods
Journal Article
JOURNAL OF CLINICAL ONCOLOGY, ISSN 0732-183X, 05/2018, Volume 36, Issue 15, pp. 6509 - 6509
Conference Proceeding
by Sieberts, Solveig K and Zhu, Fan and García-García, Javier and Stahl, Eli and Pratap, Abhishek and Pandey, Gaurav and Pappas, Dimitrios and Aguilar, Daniel and Anton, Bernat and Bonet, Jaume and Eksi, Ridvan and Fornés, Oriol and Guney, Emre and Li, Hongdong and Marín, Manuel Alejano and Panwar, Bharat and Planas-Iglesias, Joan and Poglayen, Daniel and Cui, Jing and Falcao, Ane O and Suver, Christine and Hoff, Bruce and Balagurusamy, Venkat S. K and Dillenberger, Donna and Neto, Elias Chaibub and Norman, Thea and Aittokallio, Tero and Ammad-Ud-Din, Muhammad and Azencott, Chloe-Agathe and Bellón, Víctor and Boeva, Valentina and Bunte, Kerstin and Chheda, Himanshu and Cheng, Lu and Corander, Jukka and Dumontier, Michel and Goldenberg, Anna and Gopalacharyulu, Peddinti and Hajiloo, Mohsen and Hiu, Daniel and Jaiswal, Alok and Kaski, Samuel and Khalfaoui, Beyrem and Khan, Suleiman Ali and Kramer, Eric R and Marttinen, Pekka and Mezlini, Aziz M and Molparia, Bhuvan and Pirinen, Matti and Saarela, Janna and Samwald, Matthias and Stoven, Véronique and Tang, Hao and Tang, Jing and Torkamani, Ali and Vert, Jean-Phillipe and Wang, Bo and Wang, Tao and Wennerberg, Krister and Wineinger, Nathan E and Xiao, Guanghua and Xie, Yang and Yeung, Rae and Zhan, Xiaowei and Zhao, Cheng and Greenberg, Jeff and Kremer, Joel and Michaud, Kaleb and Barton, Anne and Coenen, Marieke and Mariette, Xavier and Miceli, Corinne and Shadick, Nancy and Weinblatt, Michael and de Vries, Niek and Tak, Paul P and Gerlag, Danielle and Huizinga, Tom W. J and Kurreeman, Fina and Allaart, Cornelia F and Louis Bridges, S and Criswell, Lindsey and Moreland, Larry and Klareskog, Lars and Saevarsdottir, Saedis and Padyukov, Leonid and Gregersen, Peter K and Friend, Stephen and Plenge, Robert and Stolovitzky, Gustavo and Oliva, Baldo and Guan, Yuanfang and Mangravite, Lara M and Bridges, S. Louis and Calaza, Manuel and Elmarakeby, Haitham and Heath, Lenwood S and Long, Quan and Moore, Jonathan D and Opiyo, Stephen Obol and ... and Rheumatoid Arth Challenge and Members of the Rheumatoid Arthritis Challenge Consortium
Nature communications, ISSN 2041-1723, 2016, Volume 7, Issue 1, pp. 12460 - 12460
Journal Article
2nd Middle East Conference on Biomedical Engineering, ISSN 0018-9294, 02/2014, pp. 184 - 187
microRNA (miRNA) is a post-transcriptional gene regulation mechanism that mediates sequence-specific degradation of the targeted RNA and thus provides an... 
Proteins | Prediction algorithms | Entropy | RNA | Bioinformatics | Genomics
Conference Proceeding
OPEN FORUM INFECTIOUS DISEASES, ISSN 2328-8957, 2015, Volume 2, Issue 1
Background. Developing a universal standardized microbial typing and nomenclature system that provides phylogenetic and epidemiological information in real... 
DEFINITION | average nucleotide identity | NAMES | INFECTIOUS DISEASES | VARIANTS | SEQUENCES | classification | epidemiology | TAXONOMY | NOMENCLATURE | ebolavirus | FILOVIRUSES | phylogeny | FAMILY FILOVIRIDAE | PROKARYOTES
Journal Article
Open Forum Infectious Diseases, ISSN 2328-8957, 2015, Volume 2, Issue 1, pp. ofv024 - ofv024
Background.  Developing a universal standardized microbial typing and nomenclature system that provides phylogenetic and epidemiological information in real... 
Ebolavirus | Average nucleotide identity | Phylogeny | Epidemiology | Classification | INFECTIOUS DISEASES
Journal Article
JAMA oncology, ISSN 2374-2437, 07/2019
A rapid learning health care system for oncology will require scalable methods for extracting clinical end points from electronic health records (EHRs).... 
Index Medicus
Journal Article
by Gönen, Mehmet and Weir, Barbara A and Cowley, Glenn S and Vazquez, Francisca and Guan, Yuanfang and Jaiswal, Alok and Karasuyama, Masayuki and Uzunangelov, Vladislav and Wang, Tao and Tsherniak, Aviad and Howell, Sara and Marbach, Daniel and Hoff, Bruce and Norman, Thea C and Airola, Antti and Bivol, Adrian and Bunte, Kerstin and Carlin, Daniel and Chopra, Sahil and Deran, Alden and Ellrott, Kyle and Gopalacharyulu, Peddinti and Graim, Kiley and Kaski, Samuel and Khan, Suleiman A and Newton, Yulia and Ng, Sam and Pahikkala, Tapio and Paull, Evan and Sokolov, Artem and Tang, Hao and Tang, Jing and Wennerberg, Krister and Xie, Yang and Zhan, Xiaowei and Zhu, Fan and Afsari, Bahman and Aittokallio, Tero and Boehm, Jesse S and Chang, Yu-Chuan and Chen, Tenghui and Chong, Zechen and Elmarakeby, Haitham and Fertig, Elana J and Gonçalves, Emanuel and Gong, Pinghua and Hafemeister, Christoph and Hahn, William C and Heath, Lenwood and Kędziorski, Łukasz and Khemka, Niraj and King, Erh-kan and Lauria, Mario and Liu, Mark and Machado, Daniel and Mamitsuka, Hiroshi and Margolin, Adam A and Mazurkiewicz, Mateusz and Menden, Michael P and Migacz, Szymon and Nie, Zhi and Praveen, Paurush and Priami, Corrado and Rizzetto, Simone and Rocha, Miguel and Root, David E and Rudd, Cameron and Rudnicki, Witold R and Saez-Rodriguez, Julio and Song, Lei and Stolovitzky, Gustavo and Stuart, Joshua M and Sun, Duanchen and Szalai, Bence and Wang, Difei and Wu, Ling-yun and Xiao, Guanghua and Ye, Jieping and Ye, Yuting and Zhou, Wanding and Broad-DREAM Community
Cell Systems, ISSN 2405-4712, 01/2017, Volume 5, Issue 5, pp. 485 - 497.e3
Journal Article
Genome Medicine, ISSN 1756-994X, 11/2018, Volume 10, Issue 1, pp. 93 - 93
Journal Article