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Methods in Molecular Biology, ISSN 1064-3745, 2019, Volume 1871, pp. 455 - 465
Data-independent acquisition (DIA) mode of mass spectrometry, such as the SWATH-MS technology, enables accurate and consistent measurement of proteins, which... 
DDA | Data analysis | Spectral library | Proteomics | SWATH-MS | DIA | Mass spectrometry
Journal Article
Briefings in Bioinformatics, ISSN 1467-5463, 03/2016, Volume 17, Issue 2, p. 336
  Multiple methods have been proposed to estimate pathway activities from expression profiles, and yet, there is not enough information available about the... 
Kidney cancer | Comparative analysis | Gene expression | Cells
Journal Article
F1000Research, ISSN 2046-1402, 2019, Volume 5, p. 2674
Metastatic castration resistant prostate cancer (mCRPC) is one of the most common cancers with a poor prognosis. To improve prognostic models of mCRPC, the... 
Genitourinary Cancers | Bioinformatics | Competition | Prognosis | Clinical trials | Oncology | Prednisone | Metastasis | Gene expression | Patients | Survival | Metastases | Data dictionaries | Datasets | Variables | Chemotherapy | Castration | Prediction models | Medical prognosis | Models | Prostate cancer
Journal Article
Methods in Molecular Biology, ISSN 1064-3745, 2017, Volume 1507, pp. 141 - 151
Gene expression can be quantified in high throughput using microarray technology. Here we describe how to accurately detect differential expression and... 
Probe level | Differential expression | Differential splicing | PECA | Gene Expression Profiling - methods | Data Interpretation, Statistical | Software | Alternative Splicing | Humans | Transcriptome
Journal Article
Briefings in Bioinformatics, ISSN 1467-5463, 01/2015, Volume 16, Issue 1, p. 59
  RNA-sequencing (RNA-seq) has rapidly become a popular tool to characterize transcriptomes. A fundamental research problem in many RNA-seq studies is the... 
Data analysis | Biomarkers | Software | Comparative analysis | Gene expression | Ribonucleic acid--RNA
Journal Article
Scientific Reports, ISSN 2045-2322, 12/2017, Volume 7, Issue 1, pp. 5869 - 8
Journal Article
Briefings in Bioinformatics, ISSN 1467-5463, 09/2017, Volume 18, Issue 5, pp. 735 - 743
Journal Article
PLoS ONE, 12/2014, Volume 9, Issue 12
RNA-sequencing (RNA-seq) has rapidly become the method of choice in many genome-wide transcriptomic studies. To meet the high expectations posed by this... 
Journal Article
Nature Communications, ISSN 2041-1723, 12/2019, Volume 10, Issue 1, pp. 777 - 12
Androgen receptor (AR) is regulated by SUMOylation at its transactivation domain. In vitro, the SUMOylation is linked to transcriptional repression and/or... 
RESPONSE ELEMENT | SUMO | GENE | INTEGRITY | PATHWAY | UBIQUITIN | MULTIDISCIPLINARY SCIENCES | MOUSE EPIDIDYMIS | HEALTH | BIOCONDUCTOR | FAMILY | Chromatin | Maturation | Fertilization | Sperm | Spermatogenesis | Gene expression | Tissues | Males | SUMO protein | Gene silencing | Epididymis | Androgens | Infertility
Journal Article