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1. Full Text Lessons for big-data projects: to be successful, consortia need clear management, codes of conduct and participants who are committed to working for the common good, says ENCODE lead analysis coordinator Ewan Birney
by Birney, Ewan
Nature (London), ISSN 0028-0836, 09/2012, Volume 489, Issue 7414, p. 49
Conferences, meetings and seminars | Genetics | Genomics
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2. Full Text Lessons for big-data projects
by Birney, Ewan
Nature (London), ISSN 0028-0836, 09/2012, Volume 489, Issue 7414, pp. 49 - 51
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Studies | Consortia | Medical research | Hypotheses | Etiquette | Publications | Science | Genomes | Gene expression | Experiments | Success
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3. Full Text The making of ENCODE: Lessons for big-data projects
by Birney, Ewan
Nature (London), ISSN 0028-0836, 09/2012, Volume 489, Issue 7414, pp. 49 - 51
Guidelines as Topic | Humans | Access to Information | Cooperative Behavior | Databases, Genetic | Research Personnel - standards | Molecular Sequence Annotation - methods | Research - organization & administration | Codes of Ethics | Research - standards | Genome, Human - genetics | Regulatory Sequences, Nucleic Acid - genetics | Encyclopedias as Topic | DNA - genetics | Group Processes | Research Personnel - organization & administration | Publishing | Research - manpower | Peer Review, Research - standards | Quality Control | Consortia | Research | Human genome | Analysis | Index Medicus
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4. Full Text The Convergence of Research and Clinical Genomics
by Birney, Ewan
American journal of human genetics, ISSN 0002-9297, 05/2019, Volume 104, Issue 5, pp. 781 - 783
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Interdisciplinary Communication | Biomedical Research | Genomics - methods | Humans | Index Medicus | Forum
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5. Full Text Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
by Zerbino, Daniel R and Birney, Ewan
Genome research, ISSN 1088-9051, 05/2008, Volume 18, Issue 5, pp. 821 - 829
Biochemistry & Molecular Biology | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Mammals - genetics | Computational Biology - methods | Genome, Bacterial | Genomics | Humans | Sequence Analysis, DNA - standards | Algorithms | Animals | Streptococcus - genetics | Computer Simulation | Chromosomes, Artificial, Bacterial | Genome, Human | Sequence Analysis, DNA - methods | Usage | Nucleotide sequence | Analysis | Graphic methods | Index Medicus | Resource
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6. Full Text Sense from sequence reads: methods for alignment and assembly
by Flicek, Paul and Birney, Ewan
Nature methods, ISSN 1548-7091, 11/2009, Volume 6, Issue 11s, pp. S6 - S12
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Sequence Alignment - methods | Sequence Analysis, DNA - instrumentation | Algorithms | Sequence Alignment - instrumentation | Sequence Analysis, DNA - methods | Base Sequence | Sequential analysis | Genomics | Innovations | Research | Nucleotide sequencing | Genetic algorithms | Computational biology | Data analysis | Experiments | Research methodology | Index Medicus
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7. Full Text Human genomics: The end of the start for population sequencing
by Birney, Ewan and Soranzo, Nicole
Nature (London), ISSN 0028-0836, 09/2015, Volume 526, Issue 7571, pp. 52 - 53
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Internationality | Physical Chromosome Mapping | Humans | Genetics, Population - standards | Genomics - standards | Genetic Variation - genetics | Genome, Human - genetics | Index Medicus
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8. Full Text Automated generation of heuristics for biological sequence comparison
by Slater, Guy St.C and Birney, Ewan
BMC bioinformatics, ISSN 1471-2105, 02/2005, Volume 6, Issue 1, pp. 31 - 31
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Biochemical Research Methods | Science & Technology | Mathematical & Computational Biology | Models, Theoretical | Automation | Computational Biology - methods | Artificial Intelligence | Humans | Information Storage and Retrieval | RNA, Messenger - metabolism | Sequence Analysis, DNA | Sequence Alignment | Algorithms | Models, Biological | Computer Simulation | DNA | Software | Genome | DNA, Complementary - metabolism | Mathematical Computing | Databases, Factual | Index Medicus
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9. Full Text Assemblies: the good, the bad, the ugly
by Birney, Ewan
Nature methods, ISSN 1548-7091, 01/2011, Volume 8, Issue 1, pp. 59 - 60
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Artifacts | Algorithms | Base Sequence | Humans | Genomics - standards | Genomics - economics | Sequence Analysis, DNA - standards | Sequence Analysis, DNA - economics | Genome, Human | Genomics - methods | Sequence Analysis, DNA - methods | Human genome | Research | Genetic engineering | Genomics | Research methodology | Cost control | Index Medicus
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10. Full Text Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt
by Huber, Wolfgang and Durinck, Steffen and Spellman, Paul T and Birney, Ewan
Nature protocols, ISSN 1754-2189, 07/2009, Volume 4, Issue 8, pp. 1184 - 1191
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Cell Line | Humans | Databases, Genetic | Chromosome Mapping | Software | Genomics - methods | RNA, Messenger - metabolism | Cluster Analysis | Public software | Index Medicus | Mapping | Bioconductor | Ensembl | Identifiers | BioMart | Data Integration
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11. Full Text Oases: Robust de novo RNA-seq assembly across the dynamic range of expression levels
by Schulz, Marcel H and Zerbino, Daniel R and Vingron, Martin and Birney, Ewan
Bioinformatics, ISSN 1367-4803, 04/2012, Volume 28, Issue 8, pp. 1086 - 1092
Statistics & Probability | Biochemistry & Molecular Biology | Physical Sciences | Computer Science, Interdisciplinary Applications | Life Sciences & Biomedicine | Technology | Biochemical Research Methods | Computer Science | Mathematics | Biotechnology & Applied Microbiology | Science & Technology | Mathematical & Computational Biology | Index Medicus | Original Papers
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12. Full Text Chromatin and heritability: how epigenetic studies can complement genetic approaches
by Birney, Ewan
Trends in genetics, ISSN 0168-9525, 2011, Volume 27, Issue 5, pp. 172 - 176
Medical Education | Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Chromatin. Chromosome | Molecular and cellular biology | Genetics of eukaryotes. Biological and molecular evolution | Molecular genetics | DNA - genetics | Chromatin | Genome-Wide Association Study | Animals | Epigenesis, Genetic | Humans | Genetic Markers | Genetic research | Index Medicus
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13. Full Text GeneWise and Genomewise
by Birney, Ewan and Clamp, Michele and Durbin, Richard
Genome research, ISSN 1088-9051, 05/2004, Volume 14, Issue 5, pp. 988 - 995
Biochemistry & Molecular Biology | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Models, Theoretical | Predictive Value of Tests | Computational Biology - methods | Algorithms | 5' Flanking Region | Software | 3' Flanking Region | Research Design | DNA, Complementary | Amino acid sequence | Analysis | Genomes | Index Medicus | ENSEMBL Special
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14. Full Text EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
by Vilella, Albert J and Severin, Jessica and Ureta-Vidal, Abel and Heng, Li and Durbin, Richard and Birney, Ewan
Genome research, ISSN 1088-9051, 02/2009, Volume 19, Issue 2, pp. 327 - 335
Biochemistry & Molecular Biology | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Gene Duplication | Computational Biology - methods | Multigene Family | Vertebrates - genetics | Humans | Synteny | Phylogeny | Sequence Homology | Algorithms | Animals | Vertebrates - classification | Models, Biological | Software | Index Medicus | Resource
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