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by Thorsson, Vesteinn and Thorsson, Vésteinn and Gibbs, Richard A and Gibbs, David L and Brown, Scott D and Wolf, Gregory and Wolf, Denise and Bortone, Dante S and Ou Yang, Tai-Hsien and Porta-Pardo, Eduard and Gao, Galen F and Gao, Jianjiong and Plaisier, Christopher L and Eddy, James A and Ziv, Elad and Culhane, Aedin C and Paull, Evan O and Sivakumar, I.K. Ashok and Gentles, Andrew J and Malhotra, Raunaq and Farshidfar, Farshad and Colaprico, Antonio and Parker, Joel S and Mose, Lisle E and Vo, Nam Sy and Liu, Wenbin and Liu, Jianfang and Liu, Jia and Liu, Yuexin and Liu, Xiuping and Rader, Janet and Dhankani, Varsha and Reynolds, Sheila and Reynolds, Sheila M and Bowlby, Reanne and Califano, Andrea and Cherniack, Andrew D and Anastassiou, Dimitris and Bedognetti, Davide and Mokrab, Younes and Newman, Aaron M and Rao, Arvind and Chen, Amy and Chen, Chu and Chen, Ken and Krasnitz, Alexander and Hu, Jianhong and Hu, Hai and Malta, Tathiane M and Noushmehr, Houtan and Pedamallu, Chandra Sekhar and Bullman, Susan and Ojesina, Akinyemi I and Lamb, Andrew and Zhou, Wanding and Shen, Hui and Choueiri, Toni K and Weinstein, John N and Guinney, Justin and Saltz, Joel and Holt, Robert and Holt, Robert A and Rabkin, Charles S and Caesar-Johnson, Samantha J and Demchok, John A and Felau, Ina and Kasapi, Melpomeni and Ferguson, Martin L and Hutter, Carolyn M and Sofia, Heidi J and Tarnuzzer, Roy and Wang, Jioajiao and Wang, Min and Wang, Linghua and Wang, Zhining and Wang, Timothy and Wang, Jing and Yang, Ju Dong and Yang, Hannah and Yang, Liming and Yang, Ian and Zenklusen, Jean C and Zhang, Jiashan (Julia) and Zhang, Jiexin and Zhang, Lizhi and Zhang, Wei and Zhang, Hongzheng and Zhang, Hailei and Zhang, Hongxin and Chudamani, Sudha and Lolla, Laxmi and Naresh, Rashi and Pihl, Todd and Sun, Yichao and Sun, Qiang and Wan, Yunhu and Wu, Ye and Cho, Juok and DeFreitas, Timothy and Frazer, Scott and ... and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network
Immunity, ISSN 1074-7613, 04/2018, Volume 48, Issue 4, pp. 812 - 830.e14
We performed an extensive immunogenomic analysis of more than 10,000 tumors comprising 33 diverse cancer types by utilizing data compiled by TCGA. Across... 
tumor immunology | immunotherapy | cancer genomics | integrative network analysis | immuno-oncology | tumor microenvironment | immune subtypes | immunomodulatory | GENOMIC ANALYSES | INFORMATION | T-CELL-RECEPTOR | REGULATORY NETWORK | CLASSIFICATION | IMMUNOLOGY | SEQUENCING DATA | SOMATIC MUTATIONS | COMPREHENSIVE ANALYSIS | PREDICTION | REVEALS | Transforming Growth Factor beta - immunology | Prognosis | Humans | Middle Aged | Th1-Th2 Balance - physiology | Male | Neoplasms - classification | Wound Healing - immunology | Young Adult | Transforming Growth Factor beta - genetics | Neoplasms - genetics | Neoplasms - immunology | Interferon-gamma - immunology | Adolescent | Aged, 80 and over | Adult | Female | Aged | Interferon-gamma - genetics | Wound Healing - genetics | Genomics - methods | Child | Macrophages - immunology | Cell proliferation | Cluster analysis | Transcription | Copy number | p53 Protein | Lung cancer | Genomics | Aneuploidy | Lymphocytes T | Genomes | Cell interactions | Macrophages | Immunotherapy | DNA methylation | Deoxyribonucleic acid--DNA | Immune system | Medical research | Wound healing | Immunomodulation | MiRNA | Stockholders | Inflammation | T cell receptors | Communications networks | Gene expression | White blood cells | Inventors | Medical prognosis | γ-Interferon | Mutation | Cancer | Tumors | Index Medicus | Immune Subtypes | Integrative Network Analysis | Cancer Genomics | Immuno-oncology | Tumor immunology
Journal Article
Journal Article
by Farshidfar, Farshad and Zheng, Siyuan and Gingras, Marie-Claude and Newton, Yulia and Shih, Juliann and Robertson, A. Gordon and Hinoue, Toshinori and Hoadley, Katherine A and Gibb, Ewan A and Roszik, Jason and Covington, Kyle R and Wu, Ye and Wu, Chia-Chin and Shinbrot, Eve and Stransky, Nicolas and Hegde, Apurva M and Hegde, Apurva and Yang, Ju Dong and Yang, Liming and Reznik, Ed and Sadeghi, Sara and Pedamallu, Chandra Sekhar and Ojesina, Akinyemi I and Hess, Julian M and Auman, J. Todd and Rhie, Suhn K and Bowlby, Reanne and Borad, Mitesh J and Akbani, Rehan and Allotey, Loretta K and Ally, Adrian and Alvaro, Domenico and Andersen, Jesper B and Appelbaum, Elizabeth L and Arora, Arshi and Balasundaram, Miruna and Balu, Saianand and Bardeesy, Nabeel and Bathe, Oliver F and Baylin, Stephen B and Beroukhim, Rameen and Berrios, Mario and Bodenheimer, Tom and Boice, Lori and Bootwalla, Moiz S and Bowen, Jay and Bragazzi, Maria Consiglia and Brooks, Denise and Cardinale, Vincenzo and Carlsen, Rebecca and Carpino, Guido and Carvalho, Andre L and Chaiteerakij, Roongruedee and Chandan, Vishal C and Cherniack, Andrew D and Chin, Lynda and Cho, Juok and Choe, Gina and Chuah, Eric and Chudamani, Sudha and Cibulskis, Carrie and Cordes, Matthew G and Crain, Daniel and Curley, Erin and De Rose, Agostino Maria and Defreitas, Timothy and Demchok, John A and Deshpande, Vikram and Dhalla, Noreen and Ding, Li and Evason, Kimberley and Felau, Ina and Ferguson, Martin L and Foo, Wai Chin and Franchitto, Antonio and Frazer, Scott and Fronick, Catrina C and Fulton, Lucinda A and Fulton, Robert S and Gabriel, Stacey B and Gardner, Johanna and Gastier-Foster, Julie M and Gaudio, Eugenio and Gehlenborg, Nils and Genovese, Giannicola and Gerken, Mark and Getz, Gad and Giama, Nasra H and Gibbs, Richard A and Giuliante, Felice and Grazi, Gian Luca and Hayes, D. Neil and Heiman, David I and Holbrook, Andrea and Holt, Robert A and Hoyle, Alan P and Huang, Mei and Hutter, Carolyn M and Jefferys, Stuart R and Jones, Corbin D and ... and Canc Genome Atlas Network
Cell Reports, ISSN 2211-1247, 03/2017, Volume 18, Issue 11, pp. 2780 - 2794
Cholangiocarcinoma (CCA) is an aggressive malignancy of the bile ducts, with poor prognosis and limited treatment options. Here, we describe the integrated... 
RNA sequencing | lncRNAs | integrative genomics | whole exome | multi-omics | DNA methylation | IDH | ARID1A | cholangiocarcinoma | TCGA | ISOCITRATE DEHYDROGENASE 1 | LIVER-CANCER | HETEROGENEITY | PATHOGENESIS | BILIARY-TRACT CANCER | INTRAHEPATIC CHOLANGIOCARCINOMA | HEPATOCYTES | METABOLISM | THERAPEUTIC TARGETS | MUTATIONS | CELL BIOLOGY | Index Medicus
Journal Article
Journal Article
Ceramics International, ISSN 0272-8842, 08/2017, Volume 43, Issue 12, p. 9322
To access, purchase, authenticate, or subscribe to the full-text of this article, please visit this link: http://dx.doi.org/10.1016/j.ceramint.2017.04.096 
Nanoparticles | Biological products | Palladium
Journal Article
Ceramics International, ISSN 0272-8842, 08/2017, Volume 43, Issue 12, pp. 9322 - 9326
Journal Article
Methods in molecular biology (Clifton, N.J.), 2019, Volume 1928, pp. 235 - 249
Metabolite profiling in complex biological matrices such as serum requires high-throughput technologies capable of accurate and reproducible quantitative... 
Serum | Biomarker | Gas chromatography-mass spectrometry | Metabolite profiling | Cancer
Journal Article
BMC Cancer, ISSN 1471-2407, 2018, Volume 18, Issue 1, pp. 26 - 26
Background: Early diagnosis of colorectal cancer (CRC) simplifies treatment and improves treatment outcomes. We previously described a diagnostic metabolomic... 
Cancer biomarker | Metabolomics | Colorectal adenoma | Colorectal adenocarcinoma | Colorectal cancer | Metabolomics profiling | Mass spectrometry | ACID | ONCOLOGY | RISK | Metabolites | Analysis | Amino acids | Diagnosis | Chromatography | Cancer | Usage | Care and treatment | Research | Biological markers | Index Medicus
Journal Article
Surface Review and Letters, ISSN 0218-625X, 12/2016, Volume 23, Issue 6
The loss of acetylene partial hydrogenation selectivity over bare palladium catalyst is observed by aging. In this study, 1-butyl-3-methyl imidazolinium... 
ionic liquid | palladium catalyst | Acetylene partial hydrogenation | 1-butyl-3-methyl imidazolinium hydroxide | PHYSICS, CONDENSED MATTER | CARBON | CATALYZED ALKYNE HYDROGENATION | SIZE | CHEMISTRY, PHYSICAL | SOLUBILITY | SELECTIVE HYDROGENATION | ETHYLENE | KINETICS | ETHYNE | ETHENE
Journal Article
by Farshidfar, Farshad and Zheng, Siyuan and Gingras, Marie-Claude and Newton, Yulia and Shih, Juliann and Robertson, A. Gordon and Hinoue, Toshinori and Hoadley, Katherine A and Gibb, Ewan A and Roszik, Jason and Covington, Kyle R and Wu, Ye and Wu, Chia-Chin and Shinbrot, Eve and Stransky, Nicolas and Hegde, Apurva M and Hegde, Apurva and Yang, Ju Dong and Yang, Liming and Reznik, Ed and Sadeghi, Sara and Pedamallu, Chandra Sekhar and Ojesina, Akinyemi I and Hess, Julian M and Auman, J. Todd and Rhie, Suhn K and Bowlby, Reanne and Borad, Mitesh J and Akbani, Rehan and Allotey, Loretta K and Ally, Adrian and Alvaro, Domenico and Andersen, Jesper B and Appelbaum, Elizabeth L and Arora, Arshi and Balasundaram, Miruna and Balu, Saianand and Bardeesy, Nabeel and Bathe, Oliver F and Baylin, Stephen B and Beroukhim, Rameen and Berrios, Mario and Bodenheimer, Tom and Boice, Lori and Bootwalla, Moiz S and Bowen, Jay and Bragazzi, Maria Consiglia and Brooks, Denise and Cardinale, Vincenzo and Carlsen, Rebecca and Carpino, Guido and Carvalho, Andre L and Chaiteerakij, Roongruedee and Chandan, Vishal C and Cherniack, Andrew D and Chin, Lynda and Cho, Juok and Choe, Gina and Chuah, Eric and Chudamani, Sudha and Cibulskis, Carrie and Cordes, Matthew G and Crain, Daniel and Curley, Erin and De Rose, Agostino Maria and Defreitas, Timothy and Demchok, John A and Deshpande, Vikram and Dhalla, Noreen and Ding, Li and Evason, Kimberley and Felau, Ina and Ferguson, Martin L and Foo, Wai Chin and Franchitto, Antonio and Frazer, Scott and Fronick, Catrina C and Fulton, Lucinda A and Fulton, Robert S and Gabriel, Stacey B and Gardner, Johanna and Gastier-Foster, Julie M and Gaudio, Eugenio and Gehlenborg, Nils and Genovese, Giannicola and Gerken, Mark and Getz, Gad and Giama, Nasra H and Gibbs, Richard A and Giuliante, Felice and Grazi, Gian Luca and Hayes, D. Neil and Heiman, David I and Holbrook, Andrea and Holt, Robert A and Hoyle, Alan P and Huang, Mei and Hutter, Carolyn M and Jefferys, Stuart R and Jones, Corbin D and ... and Canc Genome Atlas Network and Cancer Genome Atlas Network
Cell Reports, ISSN 2211-1247, 06/2017, Volume 19, Issue 13, pp. 2878 - 2880
Cholangiocarcinoma (CCA) is an aggressive malignancy of the bile ducts, with poor prognosis and limited treatment options. Here, we describe the integrated... 
CELL BIOLOGY
Journal Article