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Nature Reviews Microbiology, ISSN 1740-1526, 08/2012, Volume 10, Issue 8, pp. 538 - 550
Metagenomics and 16S pyrosequencing have enabled the study of ecosystem structure and dynamics to great depth and accuracy. Co-occurrence and correlation... 
COMMUNITY STRUCTURE | DATABASE | COOCCURRENCE PATTERNS | ASSOCIATION NETWORKS | DYNAMICS | ECOLOGY | MICROBIOLOGY | NEUTRAL-THEORY | DIVERSITY | BACTERIAL | METAGENOMIC ANALYSIS | Microbial Interactions | Biota | Humans | Metagenomics - methods | Biological models | Biotic communities | Microorganisms | Models | Research | Ecosystems
Journal Article
Trends in Biotechnology, ISSN 0167-7799, 02/2019, Volume 37, Issue 2, pp. 123 - 125
Consortia outperform single microorganisms at multiple tasks. However, consortium design is challenging and successful application examples are rare. A major... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | Consortia | Design | Competition | Microorganisms | Automation | Metabolites | Bacteria | Modelling | Biomass | Biological assays | Metabolism | Prebiotics
Journal Article
F1000Research, ISSN 2046-1402, 2016, Volume 5, p. 1519
Here we present the Cytoscape app version of our association network inference tool CoNet. Though CoNet was developed with microbial community data from... 
Journal Article
by Huttenhower, Curtis and Gevers, Dirk and Knight, Rob and Abubucker, Sahar and Badger, Jonathan H and Chinwalla, Asif T and Creasy, Heather H and Earl, Ashlee M and Fitzgerald, Michael G and Fulton, Robert S and Giglio, Michelle G and Hallsworth-Pepin, Kymberlie and Lobos, Elizabeth A and Madupu, Ramana and Magrini, Vincent and Martin, John C and Mitreva, Makedonka and Muzny, Donna M and Sodergren, Erica J and Versalovic, James and Wollam, Aye M and Worley, Kim C and Wortman, Jennifer R and Young, Sarah K and Zeng, Qiandong and Aagaard, Kjersti M and Abolude, Olukemi O and Allen-Vercoe, Emma and Alm, Eric J and Alvarado, Lucia and Andersen, Gary L and Anderson, Scott and Appelbaum, Elizabeth and Arachchi, Harindra M and Armitage, Gary and Arze, Cesar A and Ayvaz, Tulin and Baker, Carl C and Begg, Lisa and Belachew, Tsegahiwot and Bhonagiri, Veena and Bihan, Monika and Blaser, Martin J and Bloom, Toby and Bonazzi, Vivien and Paul Brooks, J and Buck, Gregory A and Buhay, Christian J and Busam, Dana A and Campbell, Joseph L and Canon, Shane R and Cantarel, Brandi L and Chain, Patrick S. G and Chen, I-Min A and Chen, Lei and Chhibba, Shaila and Chu, Ken and Ciulla, Dawn M and Clemente, Jose C and Clifton, Sandra W and Conlan, Sean and Crabtree, Jonathan and Cutting, Mary A and Davidovics, Noam J and Davis, Catherine C and Desantis, Todd Z and Deal, Carolyn and Delehaunty, Kimberley D and Dewhirst, Floyd E and Deych, Elena and Ding, Yan and Dooling, David J and Dugan, Shannon P and Michael Dunne, Wm and Scott Durkin, A and Edgar, Robert C and Erlich, Rachel L and Farmer, Candace N and Farrell, Ruth M and Faust, Karoline and Feldgarden, Michael and Felix, Victor M and Fisher, Sheila and Fodor, Anthony A and Forney, Larry J and Foster, Leslie and Di Francesco, Valentina and Friedman, Jonathan and Friedrich, Dennis C and Fronick, Catrina C and Fulton, Lucinda L and Gao, Hongyu and Garcia, Nathalia and Giannoukos, Georgia and Giblin, Christina and Giovanni, Maria Y and Goldberg, Jonathan M and Goll, Johannes and Gonzalez, Antonio and Griggs, Allison and ... and Human Microbiome Project Consortiu and Human Microbiome Project Consortium and The Human Microbiome Project Consortium and Joint Genome Institute (JGI)
Nature, ISSN 0028-0836, 06/2012, Volume 486, Issue 7402, pp. 207 - 214
Journal Article
Nature Reviews Microbiology, ISSN 1740-1526, 2018, Volume 17, Issue 3, pp. 193 - 193
Journal Article
Nature, ISSN 0028-0836, 06/2016, Volume 534, Issue 7606, pp. 182 - 183
The composition of a body part's microbial community can differ substantially from one person to the next1-5. This is due to both host pressures and the... 
Host-bacteria relationships | Physiological aspects | Microbiological research | Research | Microbiota (Symbiotic organisms) | Microbiology | Digestive system | Bacteria
Journal Article
FEMS microbiology reviews, ISSN 0168-6445, 2018, Volume 42, Issue 6, pp. 761 - 780
Journal Article