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1. Full Text A comparative encyclopedia of DNA elements in the mouse genome
by Yue, Feng and Cheng, Yong and Breschi, Alessandra and Vierstra, Jeff and Wu, Weisheng and Ryba, Tyrone and Sandstrom, Richard and Ma, Zhihai and Davis, Carrie and Pope, Benjamin D and Shen, Yin and Pervouchine, Dmitri D and Djebali, Sarah and Thurman, Robert E and Kaul, Rajinder and Rynes, Eric and Kirilusha, Anthony and Marinov, Georgi K and Williams, Brian A and Trout, Diane and Amrhein, Henry and Fisher-Aylor, Katherine and Antoshechkin, Igor and DeSalvo, Gilberto and See, Lei-Hoon and Fastuca, Meagan and Drenkow, Jorg and Zaleski, Chris and Dobin, Alex and Prieto, Pablo and Lagarde, Julien and Bussotti, Giovanni and Tanzer, Andrea and Denas, Olgert and Li, Kanwei and Bender, M.A and Zhang, Miaohua and Byron, Rachel and Groudine, Mark T and McCleary, David and Pham, Long and Ye, Zhen and Kuan, Samantha and Edsall, Lee and Wu, Yi-Chieh and Rasmussen, Matthew D and Bansal, Mukul S and Kellis, Manolis and Keller, Cheryl A and Morrissey, Christapher S and Mishra, Tejaswini and Jain, Deepti and Dogan, Nergiz and Harris, Robert S and Cayting, Philip and Kawli, Trupti and Boyle, Alan P and Euskirchen, Ghia and Kundaje, Anshul and Lin, Shin and Lin, Yiing and Jansen, Camden and Malladi, Venkat S and Cline, Melissa S and Erickson, Drew T and Kirkup, Vanessa M and Learned, Katrina and Sloan, Cricket A and Rosenbloom, Kate R and De Sousa, Beatriz Lacerda and Beal, Kathryn and Pignatelli, Miguel and Flicek, Paul and Lian, Jin and Kahveci, Tamer and Lee, Dongwon and Kent, W. James and Santos, Miguel Ramalho and Herrero, Javier and Notredame, Cedric and Johnson, Audra and Vong, Shinny and Lee, Kristen and Bates, Daniel and Neri, Fidencio and Diegel, Morgan and Canfield, Theresa and Sabo, Peter J and Wilken, Matthew S and Reh, Thomas A and Giste, Erika and Shafer, Anthony and Kutyavin, Tanya and Haugen, Eric and Dunn, Douglas and Reynolds, Alex P and Neph, Shane and Humbert, Richard and Hansen, R. Scott and De Bruijn, Marella and ... and Mouse ENCODE Consortium and The Mouse ENCODE Consortium
Nature (London), ISSN 0028-0836, 11/2014, Volume 515, Issue 7527, pp. 355 - 364
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Chromatin - metabolism | Mice - genetics | Conserved Sequence - genetics | Genome-Wide Association Study | Gene Regulatory Networks - genetics | Species Specificity | Gene Expression Regulation - genetics | Genomics | Humans | Molecular Sequence Annotation | Genome - genetics | Transcriptome - genetics | Regulatory Sequences, Nucleic Acid - genetics | RNA - genetics | Transcription Factors - metabolism | Deoxyribonuclease I - metabolism | Animals | DNA Replication - genetics | Chromatin - genetics | Cell Lineage - genetics | Human beings | Genetic research | Mice | Genetic aspects | Genomes | Man | Comparative analysis | Transcription factors | Rodents | Mammals | Gene expression | Deoxyribonucleic acid--DNA | Index Medicus | Mouse genome | Epigenomics
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2. Full Text Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
by Sushmita Roy and Jason Ernst and Peter V. Kharchenko and Pouya Kheradpour and Nicolas Negre and Matthew L. Eaton and Jane M. Landolin and Christopher A. Bristow and Lijia Ma and Michael F. Lin and Stefan Washietl and Bradley I. Arshinoff and Ferhat Ay and Patrick E. Meyer and Nicolas Robine and Nicole L. Washington and Luisa Di Stefano and Eugene Berezikov and Christopher D. Brown and Rogerio Candeias and Joseph W. Carlson and Adrian Carr and Irwin Jungreis and Daniel Marbach and Rachel Sealfon and Michael Y. Tolstorukov and Sebastian Will and Artyom A. Alekseyenko and Carlo Artieri and Benjamin W. Booth and Angela N. Brooks and Qi Dai and Carrie A. Davis and Michael O. Duff and Xin Feng and Andrey A. Gorchakov and Tingting Gu and Jorja G. Henikoff and Philipp Kapranov and Renhua Li and Heather K. MacAlpine and John Malone and Aki Minoda and Jared Nordman and Katsutomo Okamura and Marc Perry and Sara K. Powell and Nicole C. Riddle and Akiko Sakai and Anastasia Samsonova and Jeremy E. Sandler and Yuri B. Schwartz and Noa Sher and Rebecca Spokony and David Sturgill and Marijke van Baren and Kenneth H. Wan and Li Yang and Charles Yu and Elise Feingold and Peter Good and Mark Guyer and Rebecca Lowdon and Kami Ahmad and Justen Andrews and Bonnie Berger and Steven E. Brenner and Michael R. Brent and Lucy Cherbas and Sarah C. R. Elgin and Thomas R. Gingeras and Robert Grossman and Roger A. Hoskins and Thomas C. Kaufman and William Kent and Mitzi I. Kuroda and Terry Orr-Weaver and Norbert Perrimon and Vincenzo Pirrotta and James W. Posakony and Bing Ren and Steven Russell and Peter Cherbas and Brenton R. Graveley and Suzanna Lewis and Gos Micklem and Brian Oliver and Peter J. Park and Susan E. Celniker and Steven Henikoff and Gary H. Karpen and Eric C. Lai and David M. MacAlpine and Lincoln D. Stein and Kevin P. White and Manolis Kellis and modENCODE Consortium and The modENCODE Consortium
Science (American Association for the Advancement of Science), ISSN 0036-8075, 12/2010, Volume 330, Issue 6012, pp. 1787 - 1797
Datasets | Chromatin | MicroRNA | RNA | RESEARCH ARTICLES | Genes | Drosophila | Genomics | Histones | Nucleosomes | Genomes | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Classical genetics, quantitative genetics, hybrids | Biological and medical sciences | Animals | Genetics of eukaryotes. Biological and molecular evolution | Invertebrata | Chromatin - metabolism | Epigenesis, Genetic | Drosophila Proteins - metabolism | Gene Regulatory Networks | Drosophila melanogaster - genetics | Drosophila melanogaster - metabolism | RNA, Small Untranslated - genetics | Transcription, Genetic | Genome, Insect | Genomics - methods | Binding Sites | RNA, Small Untranslated - metabolism | Genes, Insect | Promoter Regions, Genetic | Computational Biology - methods | Molecular Sequence Annotation | Gene Expression Regulation | Nucleosomes - metabolism | Nucleosomes - genetics | Transcription Factors - metabolism | Drosophila melanogaster - growth & development | Drosophila Proteins - genetics | Histones - metabolism | Chromatin - genetics | Transcription factors | DNA binding proteins | Research | Gene expression | Index Medicus | Proteins | Networks | Cellular | Ribonucleic acids | Replication | Mathematical models
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3. Full Text Comparative analysis of metazoan chromatin organization
by Ho, Joshua W. K and Jung, Youngsook L and Liu, Tao and Alver, Burak H and Lee, Soohyun and Ikegami, Kohta and Sohn, Kyung-Ah and Minoda, Aki and Tolstorukov, Michael Y and Appert, Alex and Parker, Stephen C. J and Gu, Tingting and Kundaje, Anshul and Riddle, Nicole C and Bishop, Eric and Egelhofer, Thea A and Hu, Sheng'En Shawn and Alekseyenko, Artyom A and Rechtsteiner, Andreas and Asker, Dalal and Belsky, Jason A and Bowman, Sarah K and Chen, Q. Brent and Chen, Ron A.-J and Day, Daniel S and Dong, Yan and Dose, Andrea C and Duan, Xikun and Epstein, Charles B and Ercan, Sevinc and Feingold, Elise A and Ferrari, Francesco and Garrigues, Jacob M and Gehlenborg, Nils and Good, Peter J and Haseley, Psalm and He, Daniel and Herrmann, Moritz and Hoffman, Michael M and Jeffers, Tess E and Kharchenko, Peter V and Kolasinska-Zwierz, Paulina and Kotwaliwale, Chitra V and Kumar, Nischay and Langley, Sasha A and Larschan, Erica N and Latorre, Isabel and Libbrecht, Maxwell W and Lin, Xueqiu and Park, Richard and Pazin, Michael J and Pham, Hoang N and Plachetka, Annette and Qin, Bo and Schwartz, Yuri B and Shoresh, Noam and Stempor, Przemyslaw and Vielle, Anne and Wang, Chengyang and Whittle, Christina M and Xue, Huiling and Kingston, Robert E and Kim, Ju Han and Bernstein, Bradley E and Dernburg, Abby F and Pirrotta, Vincenzo and Kuroda, Mitzi I and Noble, William S and Tullius, Thomas D and Kellis, Manolis and MacAlpine, David M and Strome, Susan and Elgin, Sarah C. R and Liu, Xiaole Shirley and Lieb, Jason D and Ahringer, Julie and Karpen, Gary H and Park, Peter J
Nature (London), ISSN 0028-0836, 08/2014, Volume 512, Issue 7515, pp. 449 - 452
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Chromatin - metabolism | Species Specificity | Histones - chemistry | Nucleosomes - chemistry | Epigenesis, Genetic | Humans | Chromatin Assembly and Disassembly - genetics | Centromere - metabolism | Drosophila melanogaster - genetics | Promoter Regions, Genetic - genetics | Heterochromatin - chemistry | Heterochromatin - metabolism | Nuclear Lamina - metabolism | Chromatin - chemistry | Cell Line | Caenorhabditis elegans - genetics | Molecular Sequence Annotation | Drosophila melanogaster - cytology | Nucleosomes - metabolism | Nucleosomes - genetics | Animals | Caenorhabditis elegans - cytology | Heterochromatin - genetics | Centromere - genetics | DNA Replication - genetics | Enhancer Elements, Genetic - genetics | Histones - metabolism | Chromatin - genetics | Studies | Chromatin | Genes | Genomes | Comparative analysis | Chromosomes | Methods | Index Medicus
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4. Full Text Defining functional DNA elements in the human genome
by Manolis Kellis and Barbara Wold and Michael P. Snyderd and Bradley E. Bernstein and Anshul Kundaje and Georgi K. Marinov and Lucas D. Ward and Ewan Birney and Gregory E. Crawford and Job Dekker and Ian Dunham and Laura L. Elnitski and Peggy J. Farnham and Elise A. Feingold and Mark Gerstein and Morgan C. Giddings and David M. Gilbert and Thomas R. Gingeras and Eric D. Green and Roderic Guigo and Tim Hubbard and Jim Kent and Jason D. Lieb and Richard M. Myerst and Michael J. Pazin and Bing Ren and John A. Stamatoyannopoulos and Zhiping Weng and Kevin P. White and Ross C. Hardison
Proceedings of the National Academy of Sciences - PNAS, ISSN 0027-8424, 4/2014, Volume 111, Issue 17, pp. 6131 - 6138
Human genome | RNA | PERSPECTIVE | DNA | Genomics | Genes | Evolution | Evolutionary genetics | Genomes | Biochemistry | Human genetics | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Biological Evolution | DNA - genetics | Disease - genetics | Humans | Software | Genome, Human - genetics | Regulatory Sequences, Nucleic Acid - genetics | Genetic research | Research | Nucleotide sequencing | DNA sequencing | Human subjects | Deoxyribonucleic acid--DNA | Index Medicus | Biological Sciences
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5. Full Text Comparative analysis of regulatory information and circuits across distant species
by Boyle, Alan P and Araya, Carlos L and Brdlik, Cathleen and Cayting, Philip and Cheng, Chao and Cheng, Yong and Gardner, Kathryn and Hillier, Ladeana W and Janette, Judith and Jiang, Lixia and Kasper, Dionna and Kawli, Trupti and Kheradpour, Pouya and Kundaje, Anshul and Li, Jingyi Jessica and Ma, Lijia and Niu, Wei and Rehm, E. Jay and Rozowsky, Joel and Slattery, Matthew and Spokony, Rebecca and Terrell, Robert and Vafeados, Dionne and Wang, Daifeng and Weisdepp, Peter and Wu, Yi-Chieh and Xie, Dan and Yan, Koon-Kiu and Feingold, Elise A and Good, Peter J and Pazin, Michael J and Huang, Haiyan and Bickel, Peter J and Brenner, Steven E and Reinke, Valerie and Waterston, Robert H and Gerstein, Mark and White, Kevin P and Kellis, Manolis and Snyder, Michael
Nature (London), ISSN 0028-0836, 08/2014, Volume 512, Issue 7515, pp. 453 - 456
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Conserved Sequence - genetics | Gene Regulatory Networks - genetics | Caenorhabditis elegans - growth & development | Caenorhabditis elegans - genetics | Gene Expression Regulation - genetics | Nucleotide Motifs - genetics | Humans | Molecular Sequence Annotation | Genome - genetics | Gene Expression Regulation, Developmental - genetics | Transcription Factors - genetics | Drosophila melanogaster - genetics | Transcription Factors - metabolism | Organ Specificity - genetics | Animals | Chromatin Immunoprecipitation | Drosophila melanogaster - growth & development | Binding Sites | Evolution, Molecular | Evolutionary biology | Genomes | Gene expression | Comparative analysis | Binding sites | Deoxyribonucleic acid--DNA | Methods | Index Medicus | Gene Regulation | ChIP-seq | Regulatory Information | Single Nucleotide Polymorphisms | Transcription Factor
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6. Full Text Comparative analysis of the transcriptome across distant species
by Gerstein, Mark B and Rozowsky, Joel and Yan, Koon-Kiu and Wang, Daifeng and Cheng, Chao and Brown, James B and Davis, Carrie A and Hillier, Ladeana and Sisu, Cristina and Li, Jingyi Jessica and Pei, Baikang and Harmanci, Arif O and Duff, Michael O and Djebali, Sarah and Alexander, Roger P and Alver, Burak H and Auerbach, Raymond and Bell, Kimberly and Bickel, Peter J and Boeck, Max E and Boley, Nathan P and Booth, Benjamin W and Cherbas, Lucy and Cherbas, Peter and Di, Chao and Dobin, Alex and Drenkow, Jorg and Ewing, Brent and Fang, Gang and Fastuca, Megan and Feingold, Elise A and Frankish, Adam and Gao, Guanjun and Good, Peter J and Guigó, Roderic and Hammonds, Ann and Harrow, Jen and Hoskins, Roger A and Howald, Cédric and Hu, Long and Huang, Haiyan and Hubbard, Tim J. P and Huynh, Chau and Jha, Sonali and Kasper, Dionna and Kato, Masaomi and Kaufman, Thomas C and Kitchen, Robert R and Ladewig, Erik and Lagarde, Julien and Lai, Eric and Leng, Jing and Lu, Zhi and MacCoss, Michael and May, Gemma and McWhirter, Rebecca and Merrihew, Gennifer and Miller, David M and Mortazavi, Ali and Murad, Rabi and Oliver, Brian and Olson, Sara and Park, Peter J and Pazin, Michael J and Perrimon, Norbert and Pervouchine, Dmitri and Reinke, Valerie and Reymond, Alexandre and Robinson, Garrett and Samsonova, Anastasia and Saunders, Gary I and Schlesinger, Felix and Sethi, Anurag and Slack, Frank J and Spencer, William C and Stoiber, Marcus H and Strasbourger, Pnina and Tanzer, Andrea and Thompson, Owen A and Wan, Kenneth H and Wang, Guilin and Wang, Huaien and Watkins, Kathie L and Wen, Jiayu and Wen, Kejia and Xue, Chenghai and Yang, Li and Yip, Kevin and Zaleski, Chris and Zhang, Yan and Zheng, Henry and Brenner, Steven E and Graveley, Brenton R and Celniker, Susan E and Gingeras, Thomas R and Waterston, Robert
Nature (London), ISSN 0028-0836, 08/2014, Volume 512, Issue 7515, pp. 445 - 448
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Caenorhabditis elegans - growth & development | Caenorhabditis elegans - genetics | Humans | Molecular Sequence Annotation | Gene Expression Regulation, Developmental - genetics | Gene Expression Profiling | Transcriptome - genetics | Caenorhabditis elegans - embryology | Drosophila melanogaster - genetics | Promoter Regions, Genetic - genetics | RNA, Untranslated - genetics | Pupa - genetics | Animals | Sequence Analysis, RNA | Larva - growth & development | Drosophila melanogaster - growth & development | Larva - genetics | Models, Genetic | Histones - metabolism | Pupa - growth & development | Chromatin - genetics | Cluster Analysis | Proteins | Accuracy | Transcription factors | Organisms | Gene expression | Comparative analysis | Index Medicus | Caenorhabditis elegans | Embriologia | Genètica | Regulació genètica | Transcriptomics | Comparative genomics | Drosòfila
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