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by Vasaikar, Suhas and Huang, Chen and Wang, Yi-Ting and Wang, Xiaojing and Wang, Yue and Petyuk, Vladislav A and Savage, Sara R and Wen, Bo and Dou, Yongchao and Zhang, Zhen and Zhang, Hui and Zhang, Bing and Zhang, Yun and Shi, Zhiao and Arshad, Osama A and Gritsenko, Marina A and Zimmerman, Lisa J and McDermott, Jason E and Clauss, Therese R and Moore, Ronald J and Zhao, Rui and Zhao, Yingming and Monroe, Matthew E and Chambers, Matthew C and Slebos, Robert J.C and Slebos, Robbert J.C and Lau, Ken S and Mo, Qianxing and Ding, Li and Ellis, Matthew and Ellis, Matthew J.C and Thiagarajan, Mathangi and Kinsinger, Christopher R and Rodriguez, Henry and Smith, Richard D and Rodland, Karin D and Liebler, Daniel C and Liu, Tao and Bavarva, Jasmin and Borucki, Melissa and Elburn, Kimberly and Hannick, Linda and Vatanian, Negin and Payne, Samuel H and Carr, Steven A and Clauser, Karl R and Gillette, Michael A and Kuhn, Eric and Mani, D.R and Cai, Shuang and Ketchum, Karen A and Thangudu, Ratna R and Whiteley, Gordon A and Paulovich, Amanda and Whiteaker, Jeff and Edward, Nathan J and Madhavan, Subha and McGarvey, Peter B and Chan, Daniel W and Shih, Ie-Ming and Zhu, Heng and Skates, Steven J and White, Forest M and Mertins, Philip and Pandey, Akhilesh and Boja, Emily and Hiltke, Tara and Mesri, Mehdi and Rivers, Robert C and Stein, Stephen E and Fenyo, David and Ruggles, Kelly and Levine, Douglas A and Oberti, Mauricio and Rudnick, Paul A and Snyder, Michael and Tabb, David L and Chen, Xian and Ransohoff, David F and Hoofnagle, Andrew and Sanders, Melinda E and Davies, Sherri R and Townsend, R. Reid and Watson, Mark and Clinical Proteomic Tumor Analysis and Clinical Proteomic Tumor Analysis Consortium
Cell, ISSN 0092-8674, 05/2019, Volume 177, Issue 4, pp. 1035 - 1049.e19
We performed the first proteogenomic study on a prospectively collected colon cancer cohort. Comparative proteomic and phosphoproteomic analysis of paired... 
RB1 | tumor antigen | proteomics | immune evasion | colon cancer | biomarkers | glycolysis | drug targets | SOX9 | proteogenomics | TANDEM MASS-SPECTRA | READ ALIGNMENT | DATABASE | HIGH-THROUGHPUT | COLORECTAL-CANCER | BIOCHEMISTRY & MOLECULAR BIOLOGY | IDENTIFICATION | TUMORS | SOFTWARE | SEQ | TOOL | CELL BIOLOGY | Proteins | Prevention | Antigens | Glucose metabolism | Medical colleges | Colon cancer | Analysis | Gastrointestinal diseases | T cells | Health aspects | Tumors | Cancer
Journal Article
Journal Article
Genome Medicine, ISSN 1756-994X, 07/2018, Volume 10, Issue 1, pp. 60 - 60
Journal Article
Scientific Reports, ISSN 2045-2322, 12/2017, Volume 7, Issue 1, pp. 14882 - 13
We introduce the Interaction Factor (IF), a measure for quantifying the interaction of molecular clusters in super-resolution microscopy images. The IF is... 
LOCALIZATION MICROSCOPY | FLUORESCENCE MICROSCOPY | COLOCALIZATION ANALYSIS | IMAGES | MULTIDISCIPLINARY SCIENCES | PAIR CORRELATION-ANALYSIS | PROTEIN HETEROGENEITY | SPATIAL-ORGANIZATION | OPTICAL RECONSTRUCTION MICROSCOPY | DOUBLE-STRAND BREAK | CLUSTER-ANALYSIS | Microscopy | Stochasticity | Index Medicus
Journal Article
Nature Methods, ISSN 1548-7091, 04/2018, Volume 15, Issue 5, pp. 330 - 338
Journal Article
Neuro-Oncology, ISSN 1522-8517, 06/2017, Volume 19, Issue suppl_4, pp. iv33 - iv33
PURPOSE: Optic gliomas are brain tumors characterized by slow growth, progressive loss of vision and limited therapeutic options. Optic gliomas contain various... 
Abstracts
Journal Article
Nature Communications, ISSN 2041-1723, 12/2018, Volume 9, Issue 1, pp. 5022 - 16
Journal Article
CARDIOVASCULAR RESEARCH, ISSN 0008-6363, 11/2013, Volume 100, Issue 2, pp. 231 - 240
Journal Article