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Nature Protocols, ISSN 1754-2189, 09/2011, Volume 6, Issue 9, pp. 1290 - 1307
Over the past decade, a growing community of researchers has emerged around the use of constraint-based reconstruction and analysis (COBRA) methods to... 
NETWORK | GENOME-SCALE RECONSTRUCTION | HIGH-THROUGHPUT | 2-DIMENSIONAL ANNOTATION | TUBERCULOSIS | ALTERNATE OPTIMAL-SOLUTIONS | ESCHERICHIA-COLI | GENES | BIOCHEMICAL RESEARCH METHODS | OPTIMIZATION | IDENTIFICATION | Computational Biology - methods | Software | Algorithms | Metabolic Networks and Pathways
Journal Article
Bioinformatics, ISSN 1367-4803, 09/2014, Volume 30, Issue 17, pp. 2529 - 2531
Motivation: Genome-scale metabolic reconstructions summarize current knowledge about a target organism in a structured manner and as such highlight missing... 
MODELS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | RECONSTRUCTION | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Metabolic Networks and Pathways - genetics | Software | Algorithms | Genome | Applications Notes
Journal Article
PLoS Computational Biology, ISSN 1553-734X, 07/2013, Volume 9, Issue 7, p. e1003098
Journal Article
Nature biotechnology, ISSN 1087-0156, 2013, Volume 31, Issue 5, pp. 419 - 425
Journal Article
Current Opinion in Biotechnology, ISSN 0958-1669, 2012, Volume 24, Issue 1, pp. 4 - 12
Journal Article
Nature Biotechnology, ISSN 1087-0156, 03/2018, Volume 36, Issue 3, pp. 272 - 281
Journal Article
BIOINFORMATICS, ISSN 1367-4803, 07/2019, Volume 35, Issue 13, pp. 2332 - 2334
Motivation The application of constraint-based modeling to functionally analyze metagenomic data has been limited so far, partially due to the absence of... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Applications Notes
Journal Article
Bioinformatics, ISSN 1367-4803, 05/2017, Volume 33, Issue 9, pp. 1421 - 1423
Motivation: Flux balance analysis and its variants are widely used methods for predicting steady-state reaction rates in biochemical reaction networks. The... 
METABOLISM | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GLOBAL RECONSTRUCTION | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | PREDICTION | Computational Biology - methods | Software | Metabolic Networks and Pathways | Models, Biological | BASIC BIOLOGICAL SCIENCES | MATHEMATICS AND COMPUTING | Applications Notes
Journal Article
Lab On a Chip, ISSN 1473-0197, 06/2015, Volume 15, Issue 11, pp. 2419 - 2428
A hallmark of Parkinson's disease is the progressive loss of nigrostriatal dopaminergic neurons. We derived human neuroepithelial cells from induced... 
Biotechnology | Parkinson's disease | Neurons | Bioreactors | Stem cells | Differentiation | Microfluidics | Three dimensional
Journal Article
Bioinformatics, ISSN 1367-4803, 06/2017, Volume 33, Issue 11, pp. 1741 - 1743
The Summary: In constraint-based metabolic modelling, physical and biochemical constraints define a polyhedral convex set of feasible flux vectors. Uniform... 
VOLUME ALGORITHM | METABOLISM | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | BASIC BIOLOGICAL SCIENCES | MATHEMATICS AND COMPUTING | Applications Notes
Journal Article
Journal of Theoretical Biology, ISSN 0022-5193, 11/2016, Volume 409, Issue C, pp. 1 - 10
Mathematical and computational modelling of biochemical networks is often done in terms of either the concentrations of molecular species or the fluxes of... 
Biochemical network | Flux | Duality | Concentration | Kinetics | MINIMAL CUT SETS | TOOLBOX | MODELS | BIOLOGY | MATHEMATICAL & COMPUTATIONAL BIOLOGY | SCALE METABOLIC RECONSTRUCTION | Models, Biological | Computer Simulation | Analysis | Genomics | Management science | MATHEMATICS AND COMPUTING | BASIC BIOLOGICAL SCIENCES | flux | concentration | biochemical network | kinetics | duality
Journal Article