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BMC Bioinformatics, ISSN 1471-2105, 02/2016, Volume 17, Issue 1, p. 101
Journal Article
Bioinformatics, ISSN 1367-4803, 2017, Volume 33, Issue 1, pp. 125 - 127
Journal Article
Bioinformatics, ISSN 1367-4803, 07/2015, Volume 32, Issue 1, pp. 17 - 24
Motivation: The contig orientation problem, which we formally define as the MAX-DIR problem, has at times been addressed cursorily and at times using various... 
ASSEMBLER | PROTEIN | PROGRAMS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | OPTIMIZATION | GENERATION | ALGORITHMS | REPEATS | GENOME | READS | Contig Mapping - methods | Algorithms | Reduction | Inversions | Genetics | Graph theory | Orientation | Bioinformatics | Heuristic | Original Papers
Journal Article
BMC Bioinformatics, ISSN 1471-2105, 07/2016, Volume 17, Issue S7
Journal Article
Journal Article
2017 IEEE 17th International Conference on Bioinformatics and Bioengineering (BIBE), 10/2017, Volume 2018-, pp. 212 - 216
Comparing genomes to identify polymorphisms is a difficult task, especially beyond single nucleotide poly-morphisms. Polymorphism detection is important in... 
Sequential analysis | GWAS | Genomics | de Bruijn graph | phylogenetics | polymorphism | Phylogeny | Bioinformatics | Standards | graph | Diseases | De Bruijn graph | Phylogenetics | Graph | Polymorphism
Conference Proceeding
Proceedings of the 2018 ACM International Conference on bioinformatics, computational biology, and health informatics, 08/2018, pp. 139 - 144
Bacteria with resistance genes are becoming ever more common, and new methods of discovering antibiotics are being developed. One of these new methods involves... 
drug discovery | peptide | random forest | Peptide | Random forest | Drug discovery
Conference Proceeding
Proceedings of the 5th ACM Conference on bioinformatics, computational biology, and health informatics, 09/2014, pp. 499 - 505
Next-Generation Sequencing experiments have been used to identify genotypes that are associated with many medical conditions. An important part of Next... 
mapping | variant calling | alignment | haplotype assembly | next generation sequencing | Haplotype assembly | Alignment | Mapping | Next generation sequencing | Variant calling
Conference Proceeding
2017 IEEE 17th International Conference on Bioinformatics and Bioengineering (BIBE), 10/2017, Volume 2018-, pp. 260 - 265
We present kleuren, a novel assembly-free method to reconstruct phylogenetic trees using the Colored de Bruijn Graph. kleuren works by constructing the Colored... 
colored de Bruijn graph | Image color analysis | Software packages | Genomics | Color | Vegetation | whole genome sequence | phylogenetics | Phylogeny | Bioinformatics | algorithm | Phylogenetics | Whole genome sequence | Algorithm | Colored de Bruijn graph
Conference Proceeding
The New England Journal of Medicine, ISSN 0028-4793, 11/2013, Volume 369, Issue 22, pp. 2093 - 2104
Journal Article