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science & technology (20) 20
life sciences & biomedicine (18) 18
biochemistry & molecular biology (13) 13
phylogeny (8) 8
animals (7) 7
genetics & heredity (7) 7
humans (7) 7
amino acid sequence (6) 6
biological and medical sciences (6) 6
fundamental and applied biological sciences. psychology (6) 6
molecular sequence data (6) 6
base sequence (5) 5
databases, genetic (5) 5
proteins (5) 5
cell biology (4) 4
evolution, molecular (4) 4
evolutionary biology (4) 4
genetics of eukaryotes. biological and molecular evolution (4) 4
internet (4) 4
periplasmic binding protein (4) 4
protein structure, tertiary (4) 4
sequence homology, amino acid (4) 4
arabidopsis - genetics (3) 3
biological evolution (3) 3
computational biology - methods (3) 3
databases, factual (3) 3
dna, complementary - genetics (3) 3
evolution (3) 3
evolution of protein folding (3) 3
full-length cdna (3) 3
genome (3) 3
genomics (3) 3
japan (3) 3
adenylate kinase - genetics (2) 2
arabidopsis (2) 2
argt (2) 2
binding (2) 2
bioinformatics (2) 2
biophysics (2) 2
characterization (2) 2
chimeric protein (2) 2
computational biology (2) 2
conserved sequence (2) 2
food and beverages (2) 2
full papers (2) 2
genes (2) 2
genes, plant (2) 2
genes. genome (2) 2
genetic markers (2) 2
genetics (2) 2
genome, plant (2) 2
genomes (2) 2
molecular and cellular biology (2) 2
molecular evolution (2) 2
molecular genetics (2) 2
multidisciplinary sciences (2) 2
periplasmic (2) 2
periplasmic binding proteins - chemistry (2) 2
phylogenetic tree (2) 2
plant sciences (2) 2
protein folding (2) 2
science & technology - other topics (2) 2
sequence alignment (2) 2
software (2) 2
type-1 (2) 2
type-2 (2) 2
user-computer interface (2) 2
60 applied life sciences (1) 1
[info.info-oh]computer science [cs]/other [cs.oh] (1) 1
abc transporter (1) 1
adenylate kinase (1) 1
adenylate kinase - chemistry (1) 1
adenylyl cyclases - genetics (1) 1
adn (1) 1
aids/hiv (1) 1
algorithms (1) 1
alternative splicing (1) 1
alternative splicing - genetics (1) 1
analytical, structural and metabolic biochemistry (1) 1
annotation (1) 1
apes (1) 1
arabidoposis (1) 1
arabidopsis - metabolism (1) 1
archaea - classification (1) 1
archaebacteria (1) 1
atp-binding cassette protein (1) 1
atp-binding cassette transporters - chemistry (1) 1
bacteria (1) 1
bacteria - classification (1) 1
bacteria - enzymology (1) 1
bacteria - genetics (1) 1
bacterial proteins (1) 1
base composition (1) 1
base substitution pattern (1) 1
basic biological sciences (1) 1
binding and carrier proteins (1) 1
binding sites (1) 1
biological pathways (1) 1
biological sciences (1) 1
biological transport, active (1) 1
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1. Full Text Reminder to deposit DNA sequences
by Blaxter, Mark and Danchin, Antoine and Savakis, Babis and Fukami-Kobayashi, Kaoru and Kurokawa, Ken and Sugano, Sumio and Roberts, Richard J and Salzberg, Steven L and Wu, Chung-I
Science (American Association for the Advancement of Science), ISSN 0036-8075, 05/2016, Volume 352, Issue 6287, pp. 780 - 780
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | DNA - genetics | Databases, Nucleic Acid - standards | Publications - standards | Base Sequence | Humans | Index Medicus
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2. Full Text A Tree of Life Based on Protein Domain Organizations
by Fukami-Kobayashi, Kaoru and Minezaki, Yoshiaki and Tateno, Yoshio and Nishikawa, Ken
Molecular biology and evolution, ISSN 0737-4038, 5/2007, Volume 24, Issue 5, pp. 1181 - 1189
Universal tree | Hyperthermophile | Phylogeny | Genome | Protein domain | Biochemistry & Molecular Biology | Genetics & Heredity | Life Sciences & Biomedicine | Evolutionary Biology | Science & Technology | Protein Structure, Tertiary | Bacteria - classification | Eukaryotic Cells - classification | Archaea - classification | Proteins | Eukaryotes | Taxonomy | Genomics | Genes | Evolution | Bacteria | Genetics | Molecular biology | Index Medicus
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3. Full Text SABRE2: A database connecting plant EST/full-length cDNA clones with arabidopsis information
by Fukami-Kobayashi, Kaoru and Nakamura, Yasukazu and Tamura, Takuro and Kobayashi, Masatomo
Plant and cell physiology, ISSN 0032-0781, 01/2014, Volume 55, Issue 1, pp. e5 - e5
Database | Full-length cDNA clone | TAIR | EST clone | Homolog | Arabidoposis | Life Sciences & Biomedicine | Plant Sciences | Science & Technology | Cell Biology | Arabidopsis - genetics | Sequence Homology, Amino Acid | Databases, Genetic | User-Computer Interface | Expressed Sequence Tags - metabolism | DNA, Complementary - genetics | Index Medicus
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4. Full Text Development of full-length cDNAs from Chinese Cabbage (Brassica rapa Subsp. pekinensis) and identification of marker genes for defence response
by Abe, Hiroshi and Narusaka, Yoshihiro and Sasaki, Issei and Hatakeyama, Katsunori and Shin-I, Sadasu and Narusaka, Mari and Fukami-Kobayashi, Kaoru and Matsumoto, Satoru and Kobayashi, Masatomo
DNA research, ISSN 1340-2838, 08/2011, Volume 18, Issue 4, pp. 277 - 289
full-length cDNA | salicylic acid | Brassica rapa | Arabidopsis | jasmonic acid | Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Molecular and cellular biology | Genetics of eukaryotes. Biological and molecular evolution | Molecular genetics | Genes. Genome | Amino Acid Sequence | Genes, Plant | Molecular Sequence Annotation | Computational Biology | Stress, Physiological | Molecular Sequence Data | Gene Expression Profiling | Genetic Markers | Genome, Plant | Phylogeny | Brassica rapa - genetics | Arabidopsis - genetics | Sequence Alignment | Brassica rapa - classification | Base Sequence | Brassica rapa - immunology | Gene Expression Regulation, Plant | Index Medicus | Full Papers
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5. Full Text Plant genome database Japan (PGDBj): A portal website for the integration of plant genome-related databases
by Asamizu, Erika and Ichihara, Hisako and Nakaya, Akihiro and Nakamura, Yasukazu and Hirakawa, Hideki and Ishii, Takahiro and Tamura, Takuro and Fukami-Kobayashi, Kaoru and Nakajima, Yukari and Tabata, Satoshi
Plant and cell physiology, ISSN 0032-0781, 01/2014, Volume 55, Issue 1, pp. e8 - e8
Plant resource | QTL | Plant genome | Database integration | DNA marker | Ortholog | Life Sciences & Biomedicine | Plant Sciences | Science & Technology | Cell Biology | Sequence Homology, Amino Acid | Genome, Plant - genetics | Japan | Databases, Genetic | Chromosome Mapping | Genetic Markers | Internet | Quantitative Trait Loci - genetics | Index Medicus | Special Online Collection – Database Papers
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6. Full Text Analysis of Multiple Occurrences of Alternative Splicing Events in Arabidopsis thaliana Using Novel Sequenced Full-Length cDNAs
by Iida, Kei and Fukami-Kobayashi, Kaoru and Toyoda, Atsushi and Sakaki, Yoshiyuki and Kobayashi, Masatomo and Seki, Motoaki and Shinozaki, Kazuo
DNA research, ISSN 1340-2838, 6/2009, Volume 16, Issue 3, pp. 155 - 164
Alternative splicing | Arabidopsis | Bioinformatics | Full-length cDNA | Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Fundamental and applied biological sciences. Psychology | General aspects | Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) | Molecular genetics | Genes. Genome | Biological and medical sciences | Molecular and cellular biology | Genetics of eukaryotes. Biological and molecular evolution | DNA, Complementary - analysis | RNA Splice Sites | Alternative Splicing | Exons | Genes, Plant | Introns | DNA, Complementary - genetics | DNA, Plant - metabolism | Sequence Analysis, DNA | Arabidopsis - metabolism | Arabidopsis - genetics | DNA, Plant - analysis | Base Sequence | Conserved Sequence | Trans-Activators - metabolism | DNA, Complementary - metabolism | DNA, Plant - genetics | Index Medicus | full-length cDNA | alternative splicing | Full Papers | bioinformatics
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7. Full Text Domain dislocation: a change of core structure in periplasmic binding proteins in their evolutionary history
by Fukami-Kobayashi, Kaoru and Tateno, Yoshio and Nishikawa, Ken
Journal of molecular biology, ISSN 0022-2836, 1999, Volume 286, Issue 1, pp. 279 - 290
phylogenetic tree | molecular evolution | ATP-binding cassette protein | three-dimensional structure | directionality of evolutionary process | Molecular evolution | Directionality of evolutionary process | Three-dimensional structure | Phylogenetic tree | Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Sequence Homology, Amino Acid | Amino Acid Sequence | ATP-Binding Cassette Transporters - chemistry | Escherichia coli | Molecular Sequence Data | Carrier Proteins - chemistry | Protein Conformation | Phylogeny | Carrier Proteins - classification | Evolution, Molecular | Index Medicus
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8. Full Text Parallel evolution of ligand specificity between LacI/GalR family repressors and periplasmic sugar-binding proteins
by Fukami-Kobayashi, Kaoru and Tateno, Yoshio and Nishikawa, Ken
Molecular biology and evolution, ISSN 0737-4038, 02/2003, Volume 20, Issue 2, pp. 267 - 277
Repressor | Operon | ABC transporter | Parallel evolution | Periplasmic binding protein | Functional genomics | Biochemistry & Molecular Biology | Genetics & Heredity | Life Sciences & Biomedicine | Evolutionary Biology | Science & Technology | Protein Structure, Tertiary | Amino Acid Sequence | Open Reading Frames | Carbohydrate Metabolism | Lac Repressors | Models, Molecular | Molecular Sequence Data | Repressor Proteins - genetics | Crystallography, X-Ray | Escherichia coli Proteins - metabolism | Phylogeny | Bacteria - genetics | Bacterial Proteins | Databases as Topic | Sequence Homology, Amino Acid | Escherichia coli Proteins - genetics | Protein Binding | Ligands | Binding Sites | Repressor Proteins - metabolism | Evolution, Molecular | Index Medicus
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9. Full Text Construction and Characterization of Chimeric Proteins Composed of Type-1 and Type-2 Periplasmic Binding Proteins MglB and ArgT
by KASHIWAGI, Kenji and FUKAMI-KOBAYASHI, Kaoru and SHIBA, Kiyotaka and NISHIKAWA, Ken
Bioscience, biotechnology, and biochemistry, ISSN 0916-8451, 01/2004, Volume 68, Issue 4, pp. 808 - 813
periplasmic binding protein | evolution of protein folding | chimeric protein | Evolution of protein folding | Periplasmic binding protein | Chimeric protein | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Periplasmic Binding Proteins - chemistry | Temperature | Protein Structure, Secondary | Solubility | Recombinant Fusion Proteins - chemistry | Recombinant Fusion Proteins - metabolism | Protein Folding | Protein Denaturation | Recombinant Fusion Proteins - genetics | Electrophoresis | Circular Dichroism | Periplasmic Binding Proteins - genetics | Periplasmic Binding Proteins - metabolism | Index Medicus
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10. Full Text The RIKEN integrated database of mammals
by Masuya, Hiroshi and Makita, Yuko and Kobayashi, Norio and Nishikata, Koro and Yoshida, Yuko and Mochizuki, Yoshiki and Doi, Koji and Takatsuki, Terue and Waki, Kazunori and Tanaka, Nobuhiko and Ishii, Manabu and Matsushima, Akihiro and Takahashi, Satoshi and Hijikata, Atsushi and Kozaki, Kouji and Furuichi, Teiichi and Kawaji, Hideya and Wakana, Shigeharu and Nakamura, Yukio and Yoshiki, Atsushi and Murata, Takehide and Fukami-Kobayashi, Kaoru and Mohan, Sujatha and Ohara, Osamu and Hayashizaki, Yoshihide and Mizoguchi, Riichiro and Obata, Yuichi and Toyoda, Tetsuro
Nucleic acids research, ISSN 0305-1048, 01/2011, Volume 39, Issue 1, pp. D861 - D870
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Mammals - genetics | Mammals - metabolism | User-Computer Interface | Animals | Humans | Systems Integration | Databases, Genetic | Mice | Internet | Databases, Factual | Index Medicus
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11. Full Text NBRP databases: Databases of biological resources in Japan
by Yamazaki, Yukiko and Akashi, Ryo and Banno, Yutaka and Endo, Takashi and Ezura, Hiroshi and Fukami-Kobayashi, Kaoru and Inaba, Kazuo and Isa, Tadashi and Kamei, Katsuhiko and Kasai, Fumie and Kobayashi, Masatomo and Kurata, Nori and Kusaba, Makoto and Matuzawa, Tetsuro and Mitani, Shohei and Nakamura, Taro and Nakamura, Yukio and Nakatsuji, Norio and Naruse, Kiyoshi and Niki, Hironori and Nitasaka, Eiji and Obata, Yuichi and Okamoto, Hitoshi and Okuma, Moriya and Sato, Kazuhiro and Serikawa, Tadao and Shiroishi, Toshihiko and Sugawara, Hideaki and Urushibara, Hideko and Yamamoto, Masatoshi and Yaoita, Yoshio and Yoshiki, Atsushi and Kohara, Yuji
Nucleic acids research, ISSN 0305-1048, 11/2009, Volume 38, Issue 1, pp. D26 - D32
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Genome, Viral | Computational Biology - methods | Information Storage and Retrieval - methods | Humans | Japan | Computational Biology - trends | Databases, Genetic | Gene Expression Profiling - methods | Genome, Plant | Algorithms | Animals | Databases, Protein | Software | Internet | Databases, Nucleic Acid | Index Medicus
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12. Full Text Characterization of folding pathways of the type-1 and type-2 periplasmic binding proteins MglB and ArgT
by Kashiwagi, Kenji and Shiba, Kiyotaka and Fukami-Kobayashi, Kaoru and Noda, Tetsuo and Nishikawa, Ken and Noguchi, Hiroshi
Journal of biochemistry (Tokyo), ISSN 0021-924X, 03/2003, Volume 133, Issue 3, pp. 371 - 376
Evolution of protein folding | Protein folding | Periplasmic binding protein | Urea gradient gel electrophoresis | Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Periplasmic Binding Proteins - chemistry | Periplasmic Binding Proteins - analysis | Biological Transport, Active | Periplasmic Binding Proteins - classification | Protein Folding | Protein Structure, Tertiary - physiology | Index Medicus
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13. Full Text Integrative annotation of 21,037 human genes validated by full-length cDNA clones
by Imanishi, Tadashi and Itoh, Takeshi and Suzuki, Yutaka and O'Donovan, Claire and Fukuchi, Satoshi and Koyanagi, Kanako O and Barrero, Roberto A and Tamura, Takuro and Yamaguchi-Kabata, Yumi and Tanino, Motohiko and Yura, Kei and Miyazaki, Satoru and Ikeo, Kazuho and Homma, Keiichi and Kasprzyk, Arek and Nishikawa, Tetsuo and Hirakawa, Mika and Thierry-Mieg, Jean and Thierry-Mieg, Danielle and Ashurst, Jennifer and Jia, Libin and Nakao, Mitsuteru and Thomas, Michael A and Mulder, Nicola and Karavidopoulou, Youla and Jin, Lihua and Kim, Sangsoo and Yasuda, Tomohiro and Lenhard, Boris and Eveno, Eric and Suzuki, Yoshiyuki and Yamasaki, Chisato and Takeda, Jun-Ichi and Gough, Craig and Hilton, Phillip and Fujii, Yasuyuki and Sakai, Hiroaki and Tanaka, Susumu and Amid, Clara and Bellgard, Matthew and de Fatima Bonaldo, Maria and Bono, Hidemasa and Bromberg, Susan K and Brookes, Anthony J and Bruford, Elspeth and Carninci, Piero and Chelala, Claude and Couillault, Christine and de Souza, Sandro J and Debily, Marie-Anne and Devignes, Marie-Dominique and Dubchak, Inna and Endo, Toshinori and Estreicher, Anne and Eyras, Eduardo and Fukami-Kobayashi, Kaoru and Gopinath, Gopal R and Graudens, Esther and Hahn, Yoonsoo and Han, Michael and Han, Ze-Guang and Hanada, Kousuke and Hanaoka, Hideki and Harada, Erimi and Hashimoto, Katsuyuki and Hinz, Ursula and Hirai, Momoki and Hishiki, Teruyoshi and Hopkinson, Ian and Imbeaud, Sandrine and Inoko, Hidetoshi and Kanapin, Alexander and Kaneko, Yayoi and Kasukawa, Takeya and Kelso, Janet and Kersey, Paul and Kikuno, Reiko and Kimura, Kouichi and Korn, Bernhard and Kuryshev, Vladimir and Makalowska, Izabela and Makino, Takashi and Mano, Shuhei and Mariage-Samson, Regine and Mashima, Jun and Matsuda, Hideo and Mewes, Hans-Werner and Minoshima, Shinsei and Nagai, Keiichi and Nagasaki, Hideki and Nagata, Naoki and Nigam, Rajni and Ogasawara, Osamu and Ohara, Osamu and Ohtsubo, Masafumi and Okada, Norihiro and Okido, Toshihisa and Oota, Satoshi and Ota, Motonori and Ota, Toshio and ...
PLoS biology, ISSN 1544-9173, 2004, Volume 2, Issue 6, pp. 856 - 875
Biochemistry & Molecular Biology | Biology | Life Sciences & Biomedicine - Other Topics | Life Sciences & Biomedicine | Science & Technology | Protein Structure, Tertiary | Computational Biology - methods | Alternative Splicing - genetics | Humans | DNA, Complementary - genetics | Databases, Genetic | Genes - genetics | Open Reading Frames - genetics | Microsatellite Repeats - genetics | Polymorphism, Genetic | Genes - physiology | Polymorphism, Single Nucleotide | Internet | Genome, Human | Proteins | Genomics | Genetics | Genomes | Gene expression | Polymorphism | Index Medicus | Gens | ADN | Computer Science | Other | Gene Therapy | Bioinformatics | Homo (Human) | Computational Biology
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