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1. Full Text Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing
by Jaffe, David B and Giannoukos, Georgia and Melnikov, Alexandre and Maguire, Jared and Fisher, Sheila and Fennell, Timothy and Gnirke, Andreas and Lander, Eric S and Brockman, William and Nusbaum, Chad and Rogov, Peter and Russ, Carsten and LeProust, Emily M and Gabriel, Stacey
Nature biotechnology, ISSN 1087-0156, 02/2009, Volume 27, Issue 2, pp. 182 - 189
Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Fundamental and applied biological sciences. Psychology | Biotechnology | Biological and medical sciences | Diverse techniques | Molecular and cellular biology | Nucleic Acid Hybridization | Reproducibility of Results | Biotinylation | Oligonucleotide Array Sequence Analysis | Humans | Exons - genetics | Oligonucleotides - metabolism | Sensitivity and Specificity | Bayes Theorem | Polymerase Chain Reaction | Polymorphism, Single Nucleotide - genetics | Base Composition - genetics | Genomics - methods | Sequence Analysis, DNA - methods | Polymerase chain reaction | Usage | Oligonucleotides | Physiological aspects | Nucleotide sequencing | Research | Methods | Hybridization | Ribonucleic acid--RNA | Genomics | Research methodology | Deoxyribonucleic acid--DNA | Index Medicus
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2. Full Text Functional optimization of gene clusters by combinatorial design and assembly
by Smanski, Michael J and Bhatia, Swapnil and Zhao, Dehua and Park, YongJin and Woodruff, Lauren B. A and Giannoukos, Georgia and Ciulla, Dawn and Busby, Michele and Calderon, Johnathan and Nicol, Robert and Gordon, D. Benjamin and Densmore, Douglas and Voigt, Christopher A
Nature biotechnology, ISSN 1087-0156, 12/2014, Volume 32, Issue 12, pp. 1241 - 1249
Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Promoter Regions, Genetic | Multigene Family | Nitrogen Fixation - genetics | Klebsiella oxytoca - genetics | Klebsiella oxytoca - physiology | Transcription, Genetic | Nitrogenase - genetics | High-Throughput Nucleotide Sequencing - methods | Operon - genetics | Genetic research | Usage | Algorithms | Research | Gene expression | Optimization techniques | Biosynthesis | Combinatorics | Ribonucleic acid--RNA | Genes | Deoxyribonucleic acid--DNA | Index Medicus
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3. Full Text Development of a gene-editing approach to restore vision loss in Leber congenital amaurosis type 10
by Maeder, Morgan L and Stefanidakis, Michael and Wilson, Christopher J and Baral, Reshica and Barrera, Luis Alberto and Bounoutas, George S and Bumcrot, David and Chao, Hoson and Ciulla, Dawn M and DaSilva, Jennifer A and Dass, Abhishek and Dhanapal, Vidya and Fennell, Tim J and Friedland, Ari E and Giannoukos, Georgia and Gloskowski, Sebastian W and Glucksmann, Alexandra and Gotta, Gregory M and Jayaram, Hariharan and Haskett, Scott J and Hopkins, Bei and Horng, Joy E and Joshi, Shivangi and Marco, Eugenio and Mepani, Rina and Reyon, Deepak and Ta, Terence and Tabbaa, Diana G and Samuelsson, Steven J and Shen, Shen and Skor, Maxwell N and Stetkiewicz, Pam and Wang, Tongyao and Yudkoff, Clifford and Myer, Vic E and Albright, Charles F and Jiang, Haiyan
Nature medicine, ISSN 1078-8956, 02/2019, Volume 25, Issue 2, pp. 229 - 233
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Medicine, Research & Experimental | Science & Technology | Cell Biology | Research & Experimental Medicine | Retinal degeneration | Care and treatment | Genetic aspects | Research | Gene mutations | Staphylococcus aureus | Explants | CRISPR | Blindness | Retina | Genomes | Dystrophy | Nuclease | Mutation | Gene expression | Genetic modification | Index Medicus
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4. Full Text Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
by Mikkelsen, Tarjei S and Ku, Manching and Jaffe, David B and Issac, Biju and Lieberman, Erez and Giannoukos, Georgia and Alvarez, Pablo and Brockman, William and Kim, Tae-Kyung and Koche, Richard P and Lee, William and Mendenhall, Eric and O'Donovan, Aisling and Presser, Aviva and Russ, Carsten and Xie, Xiaohui and Meissner, Alexander and Wernig, Marius and Jaenisch, Rudolf and Nusbaum, Chad and Lander, Eric S and Bernstein, Bradley E
Nature, ISSN 0028-0836, 08/2007, Volume 448, Issue 7153, pp. 553 - 560
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Chromatin. Chromosome | Molecular and cellular biology | Molecular genetics | Chromatin - metabolism | Genomic Imprinting | Pluripotent Stem Cells - cytology | Genome - genetics | Male | Promoter Regions, Genetic - genetics | Pluripotent Stem Cells - metabolism | Animals | Gene Expression Regulation, Developmental | Alleles | CpG Islands - genetics | Fibroblasts | Mice | Histones - metabolism | Transcription, Genetic - genetics | Methylation | Chromatin - genetics | Cell Lineage - genetics | Chromatin | Genomics | Research methodology | Rodents | Stem cells | Index Medicus
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5. Full Text Simultaneous generation of many RNA-seq libraries in a single reaction
by Shishkin, Alexander A and Giannoukos, Georgia and Kucukural, Alper and Ciulla, Dawn and Busby, Michele and Surka, Christine and Chen, Jenny and Bhattacharyya, Roby P and Rudy, Robert F and Patel, Milesh M and Novod, Nathaniel and Hung, Deborah T and Gnirke, Andreas and Garber, Manuel and Guttman, Mitchell and Livny, Jonathan
Nature methods, ISSN 1548-7091, 03/2015, Volume 12, Issue 4, pp. 323 - 325
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Sequence Analysis, RNA - methods | Gene Library | Time Factors | Base Sequence | Sequence Analysis, RNA - economics | Gene Expression Profiling - standards | Sequence Analysis, RNA - standards | Bacteria - genetics | RNA sequencing | Genetic research | Methods | Ribonucleic acid--RNA | Gene expression | Libraries | Index Medicus
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6. Full Text Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
by Haas, Brian J and Gevers, Dirk and Earl, Ashlee M and Feldgarden, Mike and Ward, Doyle V and Giannoukos, Georgia and Ciulla, Dawn and Tabbaa, Diana and Highlander, Sarah K and Sodergren, Erica and Methé, Barbara and DeSantis, Todd Z and Petrosino, Joseph F and Knight, Rob and Birren, Bruce W and Human Microbiome Consortium and The Human Microbiome Consortium
Genome research, ISSN 1088-9051, 03/2011, Volume 21, Issue 3, pp. 494 - 504
Biochemistry & Molecular Biology | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Nucleic Acid Amplification Techniques - methods | Genomics | RNA, Ribosomal, 16S - analysis | Molecular Sequence Data | Bacteria - genetics | Chimera - genetics | Polymerase Chain Reaction - methods | Artifacts | DNA, Bacterial - genetics | Base Sequence | Bacteria - classification | RNA, Bacterial - genetics | DNA, Bacterial - analysis | Sequence Analysis, DNA - methods | DNA, Ribosomal - genetics | Index Medicus | Resource
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7. Full Text UDiTaS™, A genome editing detection method for indels and genome rearrangements
by Giannoukos, Georgia and Ciulla, Dawn M and Marco, Eugenio and Abdulkerim, Hayat S and Barrera, Luis A and Bothmer, Anne and Dhanapal, Vidya and Gloskowski, Sebastian W and Jayaram, Hariharan and Maeder, Morgan L and Skor, Maxwell N and Wang, Tongyao and Myer, Vic E and Wilson, Christopher J
BMC genomics, ISSN 1471-2164, 03/2018, Volume 19, Issue 1, pp. 212 - 212
CRISPR/CAS9 | NGS | Translocation detection | Next generation sequencing | Gene editing | UDiTaS | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Index Medicus | CRISPR | Methodology | CAS9
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8. Full Text Structure, function and diversity of the healthy human microbiome
by Creasy, Heather H and Fitzgerald, Michael G and Fulton, Robert S and Giglio, Michelle G and Magrini, Vincent and Martin, John C and Muzny, Donna M and Sodergren, Erica J and Worley, Kim C and Wortman, Jennifer R and Alm, Eric J and Arachchi, Harindra M and Armitage, Gary and Bhonagiri, Veena and Blaser, Martin J and Bonazzi, Vivien and Buck, Gregory A and Cantarel, Brandi L and Chen, I-Min A and Chen, Lei and Clemente, Jose C and Clifton, Sandra W and Crabtree, Jonathan and Cutting, Mary A and Davis, Catherine C and Desantis, Todd Z and Deal, Carolyn and Delehaunty, Kimberley D and Ding, Yan and Dooling, David J and Dugan, Shannon P and Michael Dunne, Wm and Scott Durkin, A and Edgar, Robert C and Farrell, Ruth M and Faust, Karoline and Fodor, Anthony A and Forney, Larry J and Di Francesco, Valentina and Friedman, Jonathan and Fronick, Catrina C and Fulton, Lucinda L and Gao, Hongyu and Garcia, Nathalia and Goll, Johannes and Gonzalez, Antonio and Kinder Haake, Susan and Haas, Brian J and Hoffmann, Diane E and Huse, Susan M and Katancik, James A and Keitel, Wendy A and Kong, Heidi H and Koren, Sergey and La Rosa, Patricio S and Lemon, Katherine P and Ley, Ruth E and Liu, Bo and Madden, Tessa and Mannon, Peter J and Markowitz, Victor M and Mavromatis, Konstantinos and McCorrison, Jamison M and McInnes, Pamela and Mehta, Teena and Minx, Patrick J and Nusbaum, Chad and Oglaughlin, Michelle and Palaniappan, Krishna and Peterson, Jane and Proctor, Lita M and Reid, Jeffrey G and Rho, Mina and Rivera, Maria C and Rodriguez-Mueller, Beltran and Rogers, Yu-Hui and Ross, Matthew C and Sanka, Ravi K and Segre, Julia A and Sharp, Richard R and Sharpton, Thomas J and Shenoy, Narmada and Sheth, Nihar U and Sommer, Daniel D and Thiagarajan, Mathangi and Tomlinson, Chad M and Walker, Jason and Ward, Doyle V and Wellington, Christopher and White, James R and Wilczek-Boney, Katarzyna and Wu, Yuanqing and Youmans, Bonnie P and Zhang, Lan and Zhu, Yiming and Birren, Bruce W and Highlander, Sarah K and Methé, Barbara A and Nelson, Karen E and White, Owen and Human Microbiome Project Consortiu and Human Microbiome Project Consortium and The Human Microbiome Project Consortium and Joint Genome Institute (JGI)
Nature (London), ISSN 0028-0836, 06/2012, Volume 486, Issue 7402, pp. 207 - 214
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Morphology, structure, chemical composition | Microbiology | Bacteriology | Metagenomics | Health | Humans | Male | Biodiversity | Bacteria - genetics | Young Adult | Phenotype | Ecosystem | Adolescent | Bacteria - classification | RNA, Ribosomal, 16S - genetics | Adult | Female | Metabolic Networks and Pathways - physiology | Metagenome | Microbiota (Symbiotic organisms) | Research | Biological diversity | Disease | Habitats | Taxonomy | Data processing | Skin | Life sciences | Genomes | Index Medicus
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