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1. Full Text Critical assessment of proteome‐wide label‐free absolute abundance estimation strategies
by Ahrné, Erik and Molzahn, Lars and Glatter, Timo and Schmidt, Alexander
Proteomics (Weinheim), ISSN 1615-9853, 09/2013, Volume 13, Issue 17, pp. 2567 - 2578
Absolute protein quantification | emPAI | MS | iBAQ | Top3 | APEX | Bioinformatics | IBAQ | EmPAI | Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Drosophila melanogaster - metabolism | Schizosaccharomyces - metabolism | Animals | Proteins - metabolism | Leptospira interrogans - metabolism | Mycoplasma pneumoniae - metabolism | Escherichia coli - metabolism | Proteomics - methods | Chromatography, Liquid - methods | Mass Spectrometry - methods | Proteome - metabolism | Ascomycota - metabolism | Studies | Proteins | Methods | Index Medicus
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2. Full Text An integrated workflow for charting the human interaction proteome: insights into the PP2A system
by Wepf, Alexander and Glatter, Timo and Aebersold, Ruedi and Gstaiger, Matthias
Molecular systems biology, ISSN 1744-4292, 01/2009, Volume 5, Issue 1, pp. 237 - n/a
human interactome | mass spectrometry | PP2A | protein complexes | Human interactome | Mass spectrometry | Protein complexes | Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Yeast | Peptides | Phosphoprotein phosphatase | Mitosis | DNA damage | Workflow | Mass spectroscopy | Genomes | Phosphatase | Biological activity | Proteins | Cell growth | Databases | Reproducibility | Scientific imaging | Protein phosphatase | Proteomes | Protein interaction | Deoxyribonucleic acid--DNA | Apoptosis | Index Medicus
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3. Full Text The release of a distinct cell type from swarm colonies facilitates dissemination of Vibrio parahaemolyticus in the environment
by Freitas, Carolina and Glatter, Timo and Ringgaard, Simon
The ISME Journal, ISSN 1751-7362, 01/2020, Volume 14, Issue 1, pp. 230 - 244
Environmental Sciences & Ecology | Ecology | Life Sciences & Biomedicine | Microbiology | Science & Technology | Vibrio parahaemolyticus - growth & development | Vibrio parahaemolyticus - cytology | Environmental Microbiology | Chemotaxis | Vibrio parahaemolyticus - physiology | Water-borne diseases | Colonies | Gastroenteritis | Cytology | Colonies & territories | Seafood | Environmental changes | Flooding | Cell differentiation | Environmental conditions | Swarming behavior | Developmental stages | Swimming behavior | Physical characteristics | Bacteria | Swimming | Life cycles | Index Medicus | Microbial ecology | Water microbiology
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4. Full Text Design of a MAPK signalling cascade balances energetic cost versus accuracy of information transmission
by Anders, Alexander and Ghosh, Bhaswar and Glatter, Timo and Sourjik, Victor
Nature communications, ISSN 2041-1723, 07/2020, Volume 11, Issue 1, pp. 3494 - 3494
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Yeasts | Phosphorylation | Yeast | Transcription | Data processing | MAP kinase | Dephosphorylation | Kinases | Signalling systems | Optimization | Signal transduction | Accuracy | Cellular communication | Protein kinase | Energy dissipation | Animal behavior | Tradeoffs | Information transfer | Information processing | Cost analysis | Index Medicus
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5. Full Text Specific proteomic adaptation to distinct environments in Vibrio parahaemolyticus includes significant fluctuations in expression of essential proteins
by Freitas, Carolina and Glatter, Timo and Ringgaard, Simon
Environmental microbiology, ISSN 1462-2912, 10/2020, Volume 22, Issue 10, pp. 4279 - 4294
Life Sciences & Biomedicine | Microbiology | Science & Technology | Proteins | Bacteria | Cell differentiation | Analysis | Adaptations | Water-borne diseases | Fluctuations | Colonies | Differentiation (biology) | Survival | Cell surface | Environmental conditions | Environments | Programmes | Profiles | Habitat | Index Medicus
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6. Full Text Specific proteomic adaptation to distinct environments in Vibrio parahaemolyticus includes significant fluctuations in expression of essential proteins
: Environmental fluidity in protein expression
by Freitas, Carolina and Glatter, Timo and Ringgaard, Simon
Environmental microbiology, ISSN 1462-2912, 04/2020
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7. Full Text A cell length‐dependent transition in MinD‐dynamics promotes a switch in division‐site placement and preservation of proliferating elongated Vibrio parahaemolyticus swarmer cells
by Muraleedharan, Samada and Freitas, Carolina and Mann, Petra and Glatter, Timo and Ringgaard, Simon
Molecular microbiology, ISSN 0950-382X, 08/2018, Volume 109, Issue 3, pp. 365 - 384
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Microbiology | Science & Technology | Water-borne diseases | Preservation | Swarming behavior | Placement | Cell division | Swarming | Localization | Elongation | Index Medicus
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8. Full Text A Serial Sample Processing Strategy with Improved Performance for in-Depth Quantitative Analysis of Type III Secretion Events in Pseudomonas aeruginosa
by Lampaki, Dimitrios and Diepold, Andreas and Glatter, Timo
Journal of proteome research, ISSN 1535-3893, 01/2020, Volume 19, Issue 1, pp. 543 - 553
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Index Medicus
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9. Full Text A High-Density Map for Navigating the Human Polycomb Complexome
by Hauri, Simon and Comoglio, Federico and Seimiya, Makiko and Gerstung, Moritz and Glatter, Timo and Hansen, Klaus and Aebersold, Ruedi and Paro, Renato and Gstaiger, Matthias and Beisel, Christian
Cell reports (Cambridge), ISSN 2211-1247, 10/2016, Volume 17, Issue 2, pp. 583 - 595
gene silencing | Polycomb | proteomics | AP-MS | epigenetics | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Polycomb Repressive Complex 2 - genetics | Polycomb Repressive Complex 1 - metabolism | Humans | Gene Silencing | N-Acetylglucosaminyltransferases - genetics | Polycomb-Group Proteins - metabolism | DNA-Binding Proteins - genetics | N-Acetylglucosaminyltransferases - metabolism | DNA-Binding Proteins - metabolism | Polycomb Repressive Complex 1 - genetics | Histones - genetics | Epigenesis, Genetic - genetics | Mass Spectrometry | Polycomb-Group Proteins - genetics | HEK293 Cells | Genome, Human | Polycomb Repressive Complex 2 - metabolism | Chromatin - genetics | Ubiquitination - genetics | Index Medicus
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