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1. Uncertainty in biology
: a computational modeling approach
by Geris, Liesbet editor and Gomez-Cabrero, David, editor
2016, Studies in mechanobiology, tissue engineering and biomaterials, ISBN 9783319212968, Volume 17., ix, 478 pages
Uncertainty | Biology | Mathematical models | Biology_xData processing | Systems biology
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2. Full Text A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data
by Teschendorff, Andrew E and Marabita, Francesco and Lechner, Matthias and Bartlett, Thomas and Tegner, Jesper and Gomez-Cabrero, David and Beck, Stephan
Bioinformatics, ISSN 1367-4803, 01/2013, Volume 29, Issue 2, pp. 189 - 196
Statistics & Probability | Biochemistry & Molecular Biology | Physical Sciences | Computer Science, Interdisciplinary Applications | Life Sciences & Biomedicine | Technology | Biochemical Research Methods | Computer Science | Mathematics | Biotechnology & Applied Microbiology | Science & Technology | Mathematical & Computational Biology | DNA Methylation | Algorithms | Neoplasms - genetics | Nucleic Acid Probes - chemistry | Oligonucleotide Array Sequence Analysis - methods | Normal Distribution | Index Medicus | Quantiles | Deoxyribonucleic acid | Bias | Strategy | Mathematical models | Transformations | Methylation | Bioinformatics | Original Papers | Medicin och hälsovetenskap
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3. Full Text From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration
by Gomez-Cabrero, David and Menche, Jörg and Vargas, Claudia and Cano, Isaac and Maier, Dieter and Barabási, Albert-László and Tegnér, Jesper and Roca, Josep and Synergy-COPD Consortia and on behalf of Synergy-COPD Consortia
BMC bioinformatics, ISSN 1471-2105, 11/2016, Volume 17, Issue Suppl 15, pp. 441 - 441
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Biochemical Research Methods | Science & Technology | Mathematical & Computational Biology | Biomarkers - metabolism | Life Style | Comorbidity | Humans | Risk | Chromosome Mapping | Pulmonary Disease, Chronic Obstructive - pathology | Pulmonary Disease, Chronic Obstructive - epidemiology | Disease Progression | Aging | Principal Component Analysis | Cluster Analysis | Databases, Factual | Pulmonary Disease, Chronic Obstructive - genetics | Smoking | Lung diseases, Obstructive | Electronic data processing | Statistics | Methods | Prevalence studies (Epidemiology) | Index Medicus | Mineria de dades | Bioinformàtica | Comorbiditat | Malalties pulmonars obstructives cròniques | Marcadors bioquímics | Malalties de l'aparell digestiu | Digestive system diseases | Data mining | Chronic obstructive pulmonary diseases | Bioinformatics | Biochemical markers | Medicin och hälsovetenskap
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4. Full Text An integrative analysis reveals coordinated reprogramming of the epigenome and the transcriptome in human skeletal muscle after training
by Lindholm, Maléne E and Marabita, Francesco and Gomez-Cabrero, David and Rundqvist, Helene and Ekström, Tomas J and Tegnér, Jesper and Sundberg, Carl Johan
Epigenetics, ISSN 1559-2294, 12/2014, Volume 9, Issue 12, pp. 1557 - 1569
environment | DNA methylation | transcriptional network | epigenomics | exercise | integrative analysis | 450k arrays | lifestyle | Integrative analysis | Epigenomics | Exercise | Environment | Lifestyle | Transcriptional network | Biochemistry & Molecular Biology | Genetics & Heredity | Life Sciences & Biomedicine | Science & Technology | Epigenesis, Genetic | Humans | Gene Expression Regulation | Transcriptome | Male | Muscle, Skeletal - physiology | Physical Endurance | Case-Control Studies | DNA Methylation | Enhancer Elements, Genetic | Adult | Female | Exercise - physiology | Index Medicus | Medicin och hälsovetenskap
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5. Full Text Comment on “Epigenetics in the pathogenesis of RA”
by Gomez-Cabrero, David and Tegnér, Jesper and Ekström, Tomas J and Ospelt, Caroline
Seminars in immunopathology, ISSN 1863-2297, 06/2017, Volume 39, Issue 4, pp. 421 - 422
Pathology | Immunology | Life Sciences & Biomedicine | Science & Technology | Rheumatoid factor | Epigenetic inheritance | Epigenetics | Index Medicus | Medicin och hälsovetenskap
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6. Full Text A comparative evaluation of data-merging and meta-analysis methods for reconstructing gene-gene interactions
by Lagani, Vincenzo and Karozou, Argyro D and Gomez-Cabrero, David and Silberberg, Gilad and Tsamardinos, Ioannis
BMC bioinformatics, ISSN 1471-2105, 06/2016, Volume 17, Issue 5, pp. 194 - 194
Meta-Analysis | Yeast | Escherichia coli | Gene-network Reconstruction | Batch-effect Removal | Integrative Analysis | Peripheral Blood Mononuclear Cells | Surrogate Variable Analysis | Ikaros Transcription Factor | Saccharomyces cerevisiae - metabolism | Leukocytes, Mononuclear - metabolism | Meta-Analysis as Topic | Algorithms | Gene Regulatory Networks - genetics | Area Under Curve | Escherichia coli - genetics | Saccharomyces cerevisiae - genetics | Humans | Escherichia coli - metabolism | Leukocytes, Mononuclear - cytology | ROC Curve | Physiological aspects | Usage | Research | Gene expression | Meta-analysis | Observations | Index Medicus | Medicin och hälsovetenskap
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7. Full Text Predictive medicine: Outcomes, challenges and opportunities in the Synergy-COPD project
by Miralles, Felip and Gomez-Cabrero, David and Lluch-Ariet, Magí and Tegnér, Jesper and Cascante, Marta and Roca, Josep and Synergy-COPD Consortium and Synergy-COPD consortium
Journal of translational medicine, ISSN 1479-5876, 11/2014, Volume 12, Issue Suppl 2, pp. S12 - S12
Life Sciences & Biomedicine | Medicine, Research & Experimental | Science & Technology | Research & Experimental Medicine | Models, Theoretical | Prognosis | Risk Assessment | Comorbidity | Humans | Pulmonary Disease, Chronic Obstructive - physiopathology | Translational Medical Research - trends | Pulmonary Medicine - trends | Program Development | Muscle, Skeletal - physiopathology | Lung Diseases - physiopathology | Chronic Disease | Cluster Analysis | Lung diseases, Obstructive | Risk assessment | Analysis | Health care reform | Chronic diseases | Muscles | Health aspects | Index Medicus | Malalties cròniques | Investigació mèdica | Telecommunication in medicine | Comorbiditat | Telecomunicació en medicina | Malalties pulmonars obstructives cròniques | Medicina preventiva | Medicine research | Preventive medicine | Chronic obstructive pulmonary diseases | chronic diseases | network medicine | information and communication technologies | co-morbidities | training | Review | modelling | chronic obstructive pulmonary disease | Medicin och hälsovetenskap
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8. Full Text Data integration in the era of omics: current and future challenges
by Gomez-Cabrero, David and Abugessaisa, Imad and Maier, Dieter and Teschendorff, Andrew and Merkenschlager, Matthias and Gisel, Andreas and Ballestar, Esteban and Bongcam-Rudloff, Erik and Conesa, Ana and Tegnér, Jesper
BMC systems biology, ISSN 1752-0509, 2014, Volume 8, Issue Suppl 2, pp. I1 - I1
Life Sciences & Biomedicine | Science & Technology | Mathematical & Computational Biology | Computational Biology - methods | Animals | Biological Science Disciplines | Humans | Data Collection | Research | Computational Biology - standards | Index Medicus | Medicin och hälsovetenskap
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9. Full Text GeneSetCluster: a tool for summarizing and integrating gene-set analysis results
by Ewing, Ewoud and Planell-Picola, Nuria and Jagodic, Maja and Gomez-Cabrero, David
BMC bioinformatics, ISSN 1471-2105, 10/2020, Volume 21, Issue 1, pp. 1 - 443
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Biochemical Research Methods | Science & Technology | Mathematical & Computational Biology | RNA | Methylation | Genes | Visualization | Multiple sclerosis | Pipelines | Tools | Ribonucleic acid--RNA | Clustering | Experiments | Gene sequencing | Biological effects | DNA microarrays | DNA methylation | Deoxyribonucleic acid--DNA | DNA sequencing | Index Medicus | Clustering pathways | Data-mining | Software | Overlapping pathways | Gene-set enrichment | Clustering gene-sets
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10. Full Text EULAR points to consider for the use of big data in rheumatic and musculoskeletal diseases
by Gossec, Laure and Kedra, Joanna and Servy, Hervé and Pandit, Aridaman and Stones, Simon and Berenbaum, Francis and Finckh, Axel and Baraliakos, Xenofon and Stamm, Tanja A and Gomez-Cabrero, David and Pristipino, Christian and Choquet, Remy and Burmester, Gerd R and Radstake, Timothy R D J
Annals of the rheumatic diseases, ISSN 0003-4967, 01/2020, Volume 79, Issue 1, pp. 69 - 76
epidemiology | health services research | Immunology | Rheumatology | Biochemistry, Genetics and Molecular Biology(all) | outcomes research | Immunology and Allergy | Life Sciences & Biomedicine | Science & Technology | Confidentiality | Humans | Musculoskeletal Diseases | Information Storage and Retrieval | Big Data | Data Analysis | Data Collection | Evidence-Based Medicine | Machine Learning | Rheumatic Diseases | Information Dissemination | Medical personnel | Task forces | Experts | Decision making | Professionals | Professional ethics | Audiences | Research | Interdisciplinary aspects | Literature reviews | Learning algorithms | Researchers | Principles | Collaboration | Machine learning | Data collection | Agreements | Artificial intelligence | Index Medicus | Life Sciences | Human health and pathology | Rhumatology and musculoskeletal system | Medicin och hälsovetenskap
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11. Full Text The COPD knowledge base: Enabling data analysis and computational simulation in translational COPD research
by Cano, Isaac and Tényi, Ákos and Schueller, Christine and Wolff, Martin and Migueláñez, M Mercedes Huertas and Gomez-Cabrero, David and Antczak, Philipp and Roca, Josep and Cascante, Marta and Falciani, Francesco and Maier, Dieter
Journal of translational medicine, ISSN 1479-5876, 11/2014, Volume 12, Issue Suppl 2, pp. S6 - S6
Life Sciences & Biomedicine | Medicine, Research & Experimental | Science & Technology | Research & Experimental Medicine | User-Computer Interface | Computational Biology - methods | Knowledge Bases | Humans | Data Mining | Decision Support Systems, Clinical | Gene Expression Profiling | Pulmonary Disease, Chronic Obstructive - physiopathology | Program Development | Pulmonary Disease, Chronic Obstructive - therapy | Computer Simulation | Database Management Systems | Software | Translational Medical Research - methods | Databases, Factual | Pulmonary Disease, Chronic Obstructive - genetics | Lung diseases, Obstructive | Computer-generated environments | Computer simulation | Analysis | Physiological aspects | Mineral industry | Cellular signal transduction | Genetic transcription | Data mining | Mining industry | Protein-protein interactions | Index Medicus | Investigació mèdica | Bioinformàtica | Medical genetics | Malalties pulmonars obstructives cròniques | Genètica mèdica | Medicine research | Chronic obstructive pulmonary diseases | Bioinformatics | Research | Medicin och hälsovetenskap
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