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1. Full Text Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
by Sushmita Roy and Jason Ernst and Peter V. Kharchenko and Pouya Kheradpour and Nicolas Negre and Matthew L. Eaton and Jane M. Landolin and Christopher A. Bristow and Lijia Ma and Michael F. Lin and Stefan Washietl and Bradley I. Arshinoff and Ferhat Ay and Patrick E. Meyer and Nicolas Robine and Nicole L. Washington and Luisa Di Stefano and Eugene Berezikov and Christopher D. Brown and Rogerio Candeias and Joseph W. Carlson and Adrian Carr and Irwin Jungreis and Daniel Marbach and Rachel Sealfon and Michael Y. Tolstorukov and Sebastian Will and Artyom A. Alekseyenko and Carlo Artieri and Benjamin W. Booth and Angela N. Brooks and Qi Dai and Carrie A. Davis and Michael O. Duff and Xin Feng and Andrey A. Gorchakov and Tingting Gu and Jorja G. Henikoff and Philipp Kapranov and Renhua Li and Heather K. MacAlpine and John Malone and Aki Minoda and Jared Nordman and Katsutomo Okamura and Marc Perry and Sara K. Powell and Nicole C. Riddle and Akiko Sakai and Anastasia Samsonova and Jeremy E. Sandler and Yuri B. Schwartz and Noa Sher and Rebecca Spokony and David Sturgill and Marijke van Baren and Kenneth H. Wan and Li Yang and Charles Yu and Elise Feingold and Peter Good and Mark Guyer and Rebecca Lowdon and Kami Ahmad and Justen Andrews and Bonnie Berger and Steven E. Brenner and Michael R. Brent and Lucy Cherbas and Sarah C. R. Elgin and Thomas R. Gingeras and Robert Grossman and Roger A. Hoskins and Thomas C. Kaufman and William Kent and Mitzi I. Kuroda and Terry Orr-Weaver and Norbert Perrimon and Vincenzo Pirrotta and James W. Posakony and Bing Ren and Steven Russell and Peter Cherbas and Brenton R. Graveley and Suzanna Lewis and Gos Micklem and Brian Oliver and Peter J. Park and Susan E. Celniker and Steven Henikoff and Gary H. Karpen and Eric C. Lai and David M. MacAlpine and Lincoln D. Stein and Kevin P. White and Manolis Kellis and modENCODE Consortium and The modENCODE Consortium
Science (American Association for the Advancement of Science), ISSN 0036-8075, 12/2010, Volume 330, Issue 6012, pp. 1787 - 1797
Datasets | Chromatin | MicroRNA | RNA | RESEARCH ARTICLES | Genes | Drosophila | Genomics | Histones | Nucleosomes | Genomes | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Classical genetics, quantitative genetics, hybrids | Biological and medical sciences | Animals | Genetics of eukaryotes. Biological and molecular evolution | Invertebrata | Chromatin - metabolism | Epigenesis, Genetic | Drosophila Proteins - metabolism | Gene Regulatory Networks | Drosophila melanogaster - genetics | Drosophila melanogaster - metabolism | RNA, Small Untranslated - genetics | Transcription, Genetic | Genome, Insect | Genomics - methods | Binding Sites | RNA, Small Untranslated - metabolism | Genes, Insect | Promoter Regions, Genetic | Computational Biology - methods | Molecular Sequence Annotation | Gene Expression Regulation | Nucleosomes - metabolism | Nucleosomes - genetics | Transcription Factors - metabolism | Drosophila melanogaster - growth & development | Drosophila Proteins - genetics | Histones - metabolism | Chromatin - genetics | Transcription factors | DNA binding proteins | Research | Gene expression | Index Medicus | Proteins | Networks | Cellular | Ribonucleic acids | Replication | Mathematical models
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2. Full Text An integrated encyclopedia of DNA elements in the human genome
by Dunham, Ian and Kundaje, Anshul and Aldred, Shelley F and Collins, Patrick J and Davis, Carrie A and Doyle, Francis and Epstein, Charles B and Frietze, Seth and Harrow, Jennifer and Kaul, Rajinder and Khatun, Jainab and Lajoie, Bryan R and Landt, Stephen G and Lee, Bum-Kyu and Pauli, Florencia and Rosenbloom, Kate R and Sabo, Peter and Safi, Alexias and Sanyal, Amartya and Shoresh, Noam and Simon, Jeremy M and Song, Lingyun and Trinklein, Nathan D and Altshuler, Robert C and Birney, Ewan and Brown, James B and Cheng, Chao and Djebali, Sarah and Dong, Xianjun and Ernst, Jason and Furey, Terrence S and Gerstein, Mark and Giardine, Belinda and Greven, Melissa and Hardison, Ross C and Harris, Robert S and Herrero, Javier and Hoffman, Michael M and Iyer, Sowmya and Kellis, Manolis and Kheradpour, Pouya and Lassmann, Timo and Li, Qunhua and Lin, Xinying and Marinov, Georgi K and Merkel, Angelika and Mortazavi, Ali and Parker, Stephen C. J and Reddy, Timothy E and Rozowsky, Joel and Schlesinger, Felix and Thurman, Robert E and Wang, Jie and Ward, Lucas D and Whitfield, Troy W and Wilder, Steven P and Wu, Weisheng and Xi, Hualin S and Yip, Kevin Y and Zhuang, Jiali and Bernstein, Bradley E and Green, Eric D and Gunter, Chris and Snyder, Michael and Pazin, Michael J and Lowdon, Rebecca F and Dillon, Laura A. L and Adams, Leslie B and Kelly, Caroline J and Zhang, Julia and Wexler, Judith R and Good, Peter J and Feingold, Elise A and Crawford, Gregory E and Dekker, Job and Elnitski, Laura and Farnham, Peggy J and Giddings, Morgan C and Gingeras, Thomas R and Guigó, Roderic and Hubbard, Timothy J and Kent, W. James and Lieb, Jason D and Margulies, Elliott H and Myers, Richard M and Stamatoyannopoulos, John A and Tenenbaum, Scott A and Weng, Zhiping and White, Kevin P and Wold, Barbara and Yu, Yanbao and Wrobel, John and Risk, Brian A and Gunawardena, Harsha P and Kuiper, Heather C and Maier, Christopher W and Xie, Ling and Chen, Xian and Mikkelsen, Tarjei S and Gillespie, Shawn and ... and ENCODE Project Consortium and The ENCODE Project Consortium
Nature (London), ISSN 0028-0836, 09/2012, Volume 489, Issue 7414, pp. 57 - 74
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Classical genetics, quantitative genetics, hybrids | Human | Biological and medical sciences | Genetics of eukaryotes. Biological and molecular evolution | Mammals - genetics | Chromatin - metabolism | Histones - chemistry | Genomics | Humans | Promoter Regions, Genetic - genetics | Encyclopedias as Topic | DNA-Binding Proteins - metabolism | Chromatin Immunoprecipitation | Neoplasms - genetics | Genetic Predisposition to Disease - genetics | Genome-Wide Association Study | Chromosomes, Human - genetics | Molecular Sequence Annotation | Exons - genetics | DNA Methylation - genetics | Binding Sites - genetics | Chromosomes, Human - metabolism | Genome, Human - genetics | Regulatory Sequences, Nucleic Acid - genetics | DNA - genetics | DNA Footprinting | Proteins - genetics | Transcription Factors - metabolism | Deoxyribonuclease I - metabolism | Animals | Sequence Analysis, RNA | Alleles | Polymorphism, Single Nucleotide - genetics | Genetic Variation - genetics | Histones - metabolism | Transcription, Genetic - genetics | Chromatin - genetics | Genetic research | Genetic transcription | Research | Human genome | Proteins | Studies | Genes | DNA methylation | Genetics | Deoxyribonucleic acid--DNA | Index Medicus | Genètica | Genòmica | Genoma humà | Life Sciences
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3. Full Text Comparative analysis of the transcriptome across distant species
by Gerstein, Mark B and Rozowsky, Joel and Yan, Koon-Kiu and Wang, Daifeng and Cheng, Chao and Brown, James B and Davis, Carrie A and Hillier, Ladeana and Sisu, Cristina and Li, Jingyi Jessica and Pei, Baikang and Harmanci, Arif O and Duff, Michael O and Djebali, Sarah and Alexander, Roger P and Alver, Burak H and Auerbach, Raymond and Bell, Kimberly and Bickel, Peter J and Boeck, Max E and Boley, Nathan P and Booth, Benjamin W and Cherbas, Lucy and Cherbas, Peter and Di, Chao and Dobin, Alex and Drenkow, Jorg and Ewing, Brent and Fang, Gang and Fastuca, Megan and Feingold, Elise A and Frankish, Adam and Gao, Guanjun and Good, Peter J and Guigó, Roderic and Hammonds, Ann and Harrow, Jen and Hoskins, Roger A and Howald, Cédric and Hu, Long and Huang, Haiyan and Hubbard, Tim J. P and Huynh, Chau and Jha, Sonali and Kasper, Dionna and Kato, Masaomi and Kaufman, Thomas C and Kitchen, Robert R and Ladewig, Erik and Lagarde, Julien and Lai, Eric and Leng, Jing and Lu, Zhi and MacCoss, Michael and May, Gemma and McWhirter, Rebecca and Merrihew, Gennifer and Miller, David M and Mortazavi, Ali and Murad, Rabi and Oliver, Brian and Olson, Sara and Park, Peter J and Pazin, Michael J and Perrimon, Norbert and Pervouchine, Dmitri and Reinke, Valerie and Reymond, Alexandre and Robinson, Garrett and Samsonova, Anastasia and Saunders, Gary I and Schlesinger, Felix and Sethi, Anurag and Slack, Frank J and Spencer, William C and Stoiber, Marcus H and Strasbourger, Pnina and Tanzer, Andrea and Thompson, Owen A and Wan, Kenneth H and Wang, Guilin and Wang, Huaien and Watkins, Kathie L and Wen, Jiayu and Wen, Kejia and Xue, Chenghai and Yang, Li and Yip, Kevin and Zaleski, Chris and Zhang, Yan and Zheng, Henry and Brenner, Steven E and Graveley, Brenton R and Celniker, Susan E and Gingeras, Thomas R and Waterston, Robert
Nature (London), ISSN 0028-0836, 08/2014, Volume 512, Issue 7515, pp. 445 - 448
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Caenorhabditis elegans - growth & development | Caenorhabditis elegans - genetics | Humans | Molecular Sequence Annotation | Gene Expression Regulation, Developmental - genetics | Gene Expression Profiling | Transcriptome - genetics | Caenorhabditis elegans - embryology | Drosophila melanogaster - genetics | Promoter Regions, Genetic - genetics | RNA, Untranslated - genetics | Pupa - genetics | Animals | Sequence Analysis, RNA | Larva - growth & development | Drosophila melanogaster - growth & development | Larva - genetics | Models, Genetic | Histones - metabolism | Pupa - growth & development | Chromatin - genetics | Cluster Analysis | Proteins | Accuracy | Transcription factors | Organisms | Gene expression | Comparative analysis | Index Medicus | Caenorhabditis elegans | Embriologia | Genètica | Regulació genètica | Transcriptomics | Comparative genomics | Drosòfila
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4. Full Text Comparative analysis of metazoan chromatin organization
by Ho, Joshua W. K and Jung, Youngsook L and Liu, Tao and Alver, Burak H and Lee, Soohyun and Ikegami, Kohta and Sohn, Kyung-Ah and Minoda, Aki and Tolstorukov, Michael Y and Appert, Alex and Parker, Stephen C. J and Gu, Tingting and Kundaje, Anshul and Riddle, Nicole C and Bishop, Eric and Egelhofer, Thea A and Hu, Sheng'En Shawn and Alekseyenko, Artyom A and Rechtsteiner, Andreas and Asker, Dalal and Belsky, Jason A and Bowman, Sarah K and Chen, Q. Brent and Chen, Ron A.-J and Day, Daniel S and Dong, Yan and Dose, Andrea C and Duan, Xikun and Epstein, Charles B and Ercan, Sevinc and Feingold, Elise A and Ferrari, Francesco and Garrigues, Jacob M and Gehlenborg, Nils and Good, Peter J and Haseley, Psalm and He, Daniel and Herrmann, Moritz and Hoffman, Michael M and Jeffers, Tess E and Kharchenko, Peter V and Kolasinska-Zwierz, Paulina and Kotwaliwale, Chitra V and Kumar, Nischay and Langley, Sasha A and Larschan, Erica N and Latorre, Isabel and Libbrecht, Maxwell W and Lin, Xueqiu and Park, Richard and Pazin, Michael J and Pham, Hoang N and Plachetka, Annette and Qin, Bo and Schwartz, Yuri B and Shoresh, Noam and Stempor, Przemyslaw and Vielle, Anne and Wang, Chengyang and Whittle, Christina M and Xue, Huiling and Kingston, Robert E and Kim, Ju Han and Bernstein, Bradley E and Dernburg, Abby F and Pirrotta, Vincenzo and Kuroda, Mitzi I and Noble, William S and Tullius, Thomas D and Kellis, Manolis and MacAlpine, David M and Strome, Susan and Elgin, Sarah C. R and Liu, Xiaole Shirley and Lieb, Jason D and Ahringer, Julie and Karpen, Gary H and Park, Peter J
Nature (London), ISSN 0028-0836, 08/2014, Volume 512, Issue 7515, pp. 449 - 452
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Chromatin - metabolism | Species Specificity | Histones - chemistry | Nucleosomes - chemistry | Epigenesis, Genetic | Humans | Chromatin Assembly and Disassembly - genetics | Centromere - metabolism | Drosophila melanogaster - genetics | Promoter Regions, Genetic - genetics | Heterochromatin - chemistry | Heterochromatin - metabolism | Nuclear Lamina - metabolism | Chromatin - chemistry | Cell Line | Caenorhabditis elegans - genetics | Molecular Sequence Annotation | Drosophila melanogaster - cytology | Nucleosomes - metabolism | Nucleosomes - genetics | Animals | Caenorhabditis elegans - cytology | Heterochromatin - genetics | Centromere - genetics | DNA Replication - genetics | Enhancer Elements, Genetic - genetics | Histones - metabolism | Chromatin - genetics | Studies | Chromatin | Genes | Genomes | Comparative analysis | Chromosomes | Methods | Index Medicus
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