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1. Full Text The core gut microbiome, energy balance and obesity
by Peter J. Turnbaugh and Jeffrey I. Gordon
The Journal of Physiology, ISSN 0022-3751, 09/2009, Volume 587, Issue 17, pp. 4153 - 4158
Metagenomics is an emerging field focused on characterizing the structures, functions and dynamic operations of microbial communities sampled in their native... 
BACTERIA | PHYSIOLOGY | METAGENOMICS | DIET | OCEAN | OVERWEIGHT | ECOLOGY | DIVERSITY | INTESTINE | COMMUNITY PROTEOMICS | EXPRESSION | NEUROSCIENCES | Animals | Intestines - microbiology | Energy Metabolism | Models, Biological | Humans | Obesity - physiopathology | Intestines - physiopathology | Obesity - microbiology | Metagenome - physiology | Obesity - pathology | Obesity | RNA | Twins | Analysis | Symposium Section Reviews | The World within – Impact of the Intestinal Microbiota on Whole Body Physiology and Pathophysiology
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2. Full Text Honor Thy Gut Symbionts Redux
by Jeffrey I. Gordon
Science, ISSN 0036-8075, 6/2012, Volume 336, Issue 6086, pp. 1251 - 1253
Exploring our gut microbial communities with new tools is allowing us to revisit old questions; to develop new concepts about our evolution, postnatal... 
Symbionts | Probiotics | Metagenomics | Microbiota | Microorganisms | Communities | Humans | Collaboration | PERSPECTIVES | Genomes | Food preparation | GASTROINTESTINAL TRACT | HUMAN MICROBIOME | MICE | BACTERIAL FLORA | MULTIDISCIPLINARY SCIENCES | Symbiosis | Gastrointestinal Tract - microbiology | Microbial Consortia | Sequence Analysis, DNA | Synbiotics | Interdisciplinary Communication | Animals | Diet | Metagenome | Food | Microbiota (Symbiotic organisms) | Physiological aspects | Health aspects | Education | Health | Partnerships | Evolution | Community relations | Scientists | Excitation
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3. Full Text Microbial ecology Human gut microbes associated with obesity
by Gordon, Jeffrey I and Ley, Ruth E and Klein, Samuel and Turnbaugh, Peter J
Nature, ISSN 0028-0836, 12/2006, Volume 444, Issue 7122, pp. 1022 - 1023
Two groups of beneficial bacteria are dominant in the human gut, the Bacteroidetes and the Firmicutes. Here we show that the relative proportion of... 
Bacteroidetes - isolation & purification | Adiposity - drug effects | Humans | Gastrointestinal Tract - microbiology | Bacteroidetes - classification | Bacteria - genetics | Obesity - microbiology | Bacteria - isolation & purification | Animals | Diet | Bacteria - classification | RNA, Ribosomal, 16S - genetics | Adiposity - physiology | Bacteroidetes - genetics | Obesity | Bacteria | Weight control | Human body | Microbiology | Gastroenterology
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4. Full Text Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation
by Les Dethlefsen and David A. Relman and Jeffrey I. Gordon
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 3/2011, Volume 108, Issue Supplement 1, pp. 4554 - 4561
The indigenous human microbiota is essential to the health of the host. Although the microbiota can be affected by many features of modern life, we know little... 
Datasets | Taxa | Microbiota | Microorganisms | Antibiotics | Ecosystems | Communities | Humans | Ordination | Phenotypic traits | Colloquium Papers | Human microbiome | Ciprofloxacin | Ecosystem | Alternative stable state | Microbial community resilience | CORE | microbial community resilience | ecosystem | MULTIDISCIPLINARY SCIENCES | PROBIOTICS | LACTOBACILLI | HUMAN INTESTINAL BACTERIA | SP NOV | HUMAN FECES | EVOLUTION | human microbiome | DISEASE | DIVERSITY | alternative stable state | ciprofloxacin | Metagenome - drug effects | Ciprofloxacin - pharmacology | Molecular Sequence Data | Colony Count, Microbial | Biodiversity | Sequence Analysis, DNA | Feces - microbiology | Intestine, Large - microbiology | Metagenome - genetics | Time Factors | Base Sequence | RNA, Ribosomal, 16S - genetics | Principal Component Analysis | Complications and side effects | Dosage and administration | Research | Microbiota (Symbiotic organisms) | Biological Sciences | Papers
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5. Full Text Diversity, stability and resilience of the human gut microbiota
by Lozupone, Catherine A and Stombaugh, Jesse I and Gordon, Jeffrey I and Jansson, Janet K and Knight, Rob and Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Nature, ISSN 0028-0836, 09/2012, Volume 489, Issue 7415, pp. 220 - 230
Trillions of microbes inhabit the human intestine, forming a complex ecological community that influences normal physiology and susceptibility to disease... 
HUMAN COLON | INFLAMMATORY-BOWEL-DISEASE | CROHNS-DISEASE | INTESTINAL MICROBIOTA | SEQUENCE DATA | MULTIDISCIPLINARY SCIENCES | FECAL MICROBIOTA | ANTIBIOTIC-TREATMENT | CLOSTRIDIUM-DIFFICILE | BODY HABITATS | MOLECULAR ANALYSIS | Metagenome - genetics | Intestines - microbiology | Diet | Health | Humans | Environment | Intestines - metabolism | Biodiversity | Host-bacteria relationships | Research | Microbiota (Symbiotic organisms) | Biological diversity | Microbiology | Antibiotics | Metabolites | Taxonomy | Proteomics | Genomes | GEOSCIENCES | ENVIRONMENTAL SCIENCES
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6. Full Text Human nutrition, the gut microbiome and the immune system
by Kau, Andrew L and Ahern, Philip P and Griffin, Nicholas W and Goodman, Andrew L and Gordon, Jeffrey I
Nature, ISSN 0028-0836, 06/2011, Volume 474, Issue 7351, pp. 327 - 336
Marked changes in socio-economic status, cultural traditions, population growth and agriculture are affecting diets worldwide. Understanding how our diet and... 
OBESITY | CHILD UNDERNUTRITION | INTESTINAL MICROFLORA | ARYL-HYDROCARBON RECEPTOR | INSULIN-RESISTANCE | MULTIDISCIPLINARY SCIENCES | KEY ROLE | SMALL-BOWEL | T-CELLS | INNATE IMMUNITY | ADIPOSE-TISSUE | Gastrointestinal Tract - immunology | Metagenomics | Animals | Obesity - immunology | Humans | Gastrointestinal Tract - microbiology | Immune System - immunology | Diet - trends | Milk, Human - immunology | Metagenome - immunology | Obesity - microbiology | Nutritional Physiological Phenomena - physiology | Nutrition | Diet | Microbiology | Womens health | Mortality
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7. Full Text Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
by Bokulich, Nicholas A and Subramanian, Sathish and Faith, Jeremiah J and Gevers, Dirk and Gordon, Jeffrey I and Knight, Rob and Mills, David A and Caporaso, J Gregory
Nature Methods, ISSN 1548-7091, 01/2013, Volume 10, Issue 1, pp. 57 - 59
High-throughput sequencing has revolutionized microbial ecology, but read quality remains a considerable barrier to accurate taxonomy assignment and... 
BIOCHEMICAL RESEARCH METHODS | Biodiversity | High-Throughput Nucleotide Sequencing - methods | Sequence Analysis, DNA - methods | Humans | Quality Control | Measurement | Microbiological research | Innovations | Nucleotide sequencing | Methods | Biological diversity | DNA sequencing | Microbiology | Taxonomy
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8. Full Text The abundance and variety of carbohydrate-active enzymes in the human gut microbiota
by Kaoutari, Abdessamad El and Armougom, Fabrice and Gordon, Jeffrey I and Raoult, Didier and Henrissat, Bernard
Nature Reviews Microbiology, ISSN 1740-1526, 07/2013, Volume 11, Issue 7, pp. 497 - 504
Descriptions of the microbial communities that live on and in the human body have progressed at a spectacular rate over the past 5 years, fuelled primarily by... 
BACTERIA | COLONIC FUNCTION | RESISTANT STARCH | CHAIN FATTY-ACIDS | DIETARY FIBER | DEGRADATION | MICROBIOLOGY | SP-NOV | HUMAN FECES | SEQUENCE-BASED CLASSIFICATION | GLYCOSYL HYDROLASES | Polysaccharide-Lyases - metabolism | Polysaccharide-Lyases - isolation & purification | Humans | Gastrointestinal Tract - microbiology | Glycoside Hydrolases - isolation & purification | Bacteria - genetics | Glycosyltransferases - isolation & purification | Glycosyltransferases - metabolism | Bacteria - classification | Bacteria - enzymology | Gastrointestinal Tract - enzymology | Glycoside Hydrolases - metabolism | Metagenome | Carbohydrates | Enzymes | Polysaccharides | Microbiota (Symbiotic organisms) | Physiological aspects | Genetic aspects | Nucleotide sequencing | DNA sequencing
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