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animals (168) 168
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pigs (20) 20
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single nucleotide polymorphisms (20) 20
sus scrofa - genetics (20) 20
analysis (19) 19
populations (18) 18
sequence analysis, dna (18) 18
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1. Full Text First report on chicken genes and chromosomes 2000
by Schmid, M and Nanda, I and Guttenbach, M and Steinlein, C and Hoehn, M and Schartl, M and Haaf, T and Weigend, S and Fries, R and Buerstedde, J-M and Wimmers, K and Burt, D.W and Smith, J and A’Hara, S and Law, A and Griffin, D.K and Bumstead, N and Kaufman, J and Thomson, P.A and Burke, T and Groenen, M .A.M and Crooijmans, R.P.M.A and Vignal, A and Fillon, V and Morisson, M and Pitel, F and Tixier-Boichard, M and Ladjali-Mohammedi, K and Hillel, J and Mäki-Tanila, A and Cheng, H.H and Delany, M.E and Burnside, J and Mizuno, S
Cytogenetic and Genome Research, ISSN 1424-8581, 2000, Volume 90, Issue 3-4, pp. 169 - 218
    
Paper | GALLUS-GALLUS-DOMESTICUS | LINKAGE MAP | RADIATION HYBRID MAP | EVOLUTIONARY CONSERVATION | GENETICS & HEREDITY | IN-SITU HYBRIDIZATION | DROSOPHILA HOMEOTIC GENES | BULKED SEGREGANT ANALYSIS | MOLECULAR-CLONING | MAJOR HISTOCOMPATIBILITY COMPLEX | EXPRESSED SEQUENCE TAGS | CELL BIOLOGY | Physical Chromosome Mapping | Humans | Genes - genetics | Longevity | Databases as Topic | Animals | Chromosomes - genetics | Recombination, Genetic | Base Sequence | Cloning, Molecular | Polymorphism, Single Nucleotide - genetics | Chickens - genetics | Genome | Evolution, Molecular | Telomere - genetics
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2. Full Text Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
by Hillier, L.W and Miller, W and Birney, E and Groenen, M.A.M and Crooijmans, R.P.M.A and Aerts, J and Poel, van der, J.J and International Chicken Genome Sequencing Consortium and Medicinska fakulteten and Medicinska och farmaceutiska vetenskapsområdet and Institutionen för medicinsk biokemi och mikrobiologi and Evolutionsbiologi and Institutionen för evolution, genomik och systematik and Teknisk-naturvetenskapliga vetenskapsområdet and Biologiska sektionen and Uppsala universitet
Nature, ISSN 0028-0836, 2004, Volume 432, Issue 7018, pp. 695 - 716
We present here a draft genome sequence of the red jungle fowl, Gallus gallus. Because the chicken is a modern descendant of the dinosaurs and the first... 
MOUSE GENOME | NON-LTR RETROTRANSPOSONS | ALCOHOL-DEHYDROGENASE | PHYLOGENETIC ANALYSIS | MULTIDISCIPLINARY SCIENCES | BROWN-NORWAY RAT | RECENT SEGMENTAL DUPLICATIONS | MAJOR HISTOCOMPATIBILITY COMPLEX | TISSUE-SPECIFIC GENES | OLFACTORY RECEPTOR | MAMMALIAN EVOLUTION | Gene Duplication | Multigene Family - genetics | Conserved Sequence - genetics | Vertebrates - genetics | Physical Chromosome Mapping | Genomics | Humans | Long Interspersed Nucleotide Elements - genetics | Mutagenesis - genetics | Synteny | Genes - genetics | Short Interspersed Nucleotide Elements - genetics | RNA, Untranslated - genetics | Sequence Analysis, DNA | Pseudogenes - genetics | Animals | Retroviridae - genetics | DNA Transposable Elements - genetics | Chickens - genetics | Genome | Avian Proteins - genetics | Evolution, Molecular | Birds | Evolution | Genetic diversity | Gene expression | Mammals | Chromosomes | Research Support; U.S. Gov't; P.H.S | Research Support; U.S. Gov't; Non-P.H.S | Comparative Study | Long Interspersed Nucleotide Elements/genetics | Biology | Avian Proteins/genetics | Vertebrates/genetics | Short Interspersed Nucleotide Elements/genetics | Pseudogenes/genetics | Genetics | Research Support; Non-U.S. Gov't | Biologi | Natural Sciences | Biological Sciences | RNA; Untranslated/genetics | Mutagenesis/genetics | DNA Transposable Elements/genetics | Multigene Family/genetics | Retroviridae/genetics | Sequence Analysis; DNA | Genetik | Genes/genetics | Naturvetenskap | Conserved Sequence/genetics | Evolution; Molecular | Biologiska vetenskaper | Cell and molecular biology | Chickens/genetics | Cell- och molekylärbiologi | phylogenetic analysis | mammalian evolution | tissue-specific genes | brown-norway rat | non-ltr retrotransposons | major histocompatibility complex | olfactory receptor | mouse genome | recent segmental duplications | alcohol-dehydrogenase
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3. Full Text Strong signatures of selection in the domestic pig genome
by Carl-Johan Rubin and Hendrik-Jan Megens and Alvaro Martinez Barrio and Khurram Maqbool and Shumaila Sayyab and Doreen Schwochow and Chao Wang and Örjan Carlborg and Patric Jern and Claus B. Jørgensen and Alan L. Archibald and Merete Fredholm and Martien A. M. Groenen and Leif Andersson and Medicinska fakulteten and Science for Life Laboratory, SciLifeLab and Medicinska och farmaceutiska vetenskapsområdet and Institutionen för medicinsk biokemi och mikrobiologi and Uppsala universitet
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 11/2012, Volume 109, Issue 48, pp. 19529 - 19536
Domestication of wild boar (Sus scrofa) and subsequent selection have resulted in dramatic phenotypic changes in domestic pigs for a number of traits,... 
Haplotypes | Quantitative trait loci | Swine | Wild boars | Genomics | Alleles | Genetic loci | Genomes | Genetic mutation | Chromosomes | QUANTITATIVE TRAIT LOCI | RECOMBINATION | CHROMOSOME | FATNESS | MULTIDISCIPLINARY SCIENCES | MUTATION | GROWTH | GENE-EXPRESSION | RECEPTOR | DIVERSITY | IDENTIFICATION | Sequence Homology, Amino Acid | Amino Acid Sequence | Homozygote | Animals | Animals, Domestic - genetics | Selection, Genetic | Molecular Sequence Data | Swine - genetics | Genome | Quantitative Trait Loci | DNA Copy Number Variations | Quantitative genetics | Animal genetics | Physiological aspects | Genetic aspects | Research | Natural selection | Biological Sciences | Naturvetenskap | Natural Sciences | skeletal-muscle | mutation | receptor | identification | recombination | gene-expression | growth | variants | quantitative trait loci | human height
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4. Full Text Evidence of long-term gene flow and selection during domestication from analyses of Eurasian wild and domestic pig genomes
by Frantz, L.A.F and Schraiber, J.G and Madsen, O and Megens, H.J.W.C and Cagan, A and Bosse, M and Paudel, Y and Crooijmans, R.P.M.A and Larson, G and Groenen, M.A.M
Nature Genetics, ISSN 1061-4036, 2015, Volume 47, Issue 10, pp. 1141 - 1148
Traditionally, the process of domestication is assumed to be initiated by humans, involve few individuals and rely on reproductive isolation between wild and... 
BAYESIAN COMPUTATION | ANALYSIS REVEALS | SUS | GEOMETRIC MORPHOMETRICS | ORIGINS | SHAPE | EVOLUTION | ANIMAL DOMESTICATION | SPECIATION | GENETICS & HEREDITY | ANCIENT DNA | Animals | Animals, Domestic - genetics | Asia | Gene Flow | Europe | Animals, Wild - genetics | Swine - genetics | Genome | Domestication | Genetic research | Genetic aspects | Swine | Leerstoelgroep Fokkerij en genetica | Fokkerij en Genomica | Animal Breeding and Genomics | WIAS | Fokkerij en Genetica | Animal Breeding and Genetics
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5. Full Text The duck genome and transcriptome provide insight into an avian influenza virus reservoir species
by Huang, Y and Li, Y and Burt, D.W and Chen, H and Groenen, M.A.M and Crooijmans, R.P.M.A and Kraus, R.H.S
Nature Genetics, ISSN 1061-4036, 2013, Volume 45, Issue 7, pp. 776 - 783
The duck (Anas platyrhynchos) is one of the principal natural hosts of influenza A viruses. We present the duck genome sequence and perform deep transcriptome... 
A VIRUS | MAXIMUM-LIKELIHOOD | TRANSMISSION | PROTEIN | POSITIVE SELECTION | GENETICS & HEREDITY | GENE FAMILY EVOLUTION | DUPLICATION | DEFENSINS | PHYLOGENETIC TREES | EXPRESSION | Ducks - genetics | Species Specificity | Genome - physiology | Ducks - virology | Ducks - immunology | Molecular Sequence Data | Transcriptome - genetics | Influenza in Birds - immunology | Phylogeny | Host-Pathogen Interactions - immunology | Animals | Host-Pathogen Interactions - genetics | Influenza in Birds - genetics | Base Sequence | Chickens - genetics | Female | Geese - genetics | Disease Reservoirs | Disease Vectors | Immunity - genetics | Avian influenza viruses | Zebra finch | Genetic aspects | Research | Health aspects | Genomics | Birds | Viruses | Wildfowl | Genomes | Gene expression | Chromosomes | gene family evolution | phylogenetic trees | defensins | transmission | expression | protein | maximum-likelihood | a virus | positive selection | duplication
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6. Full Text Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology
by Ramos, A and Crooijmans, R.P.M.A and Affara, N.A and Amaral, A.J and Kerstens, H.H.D and Megens, H.J.W.C and Groenen, M.A.M
PLoS One, ISSN 1932-6203, 2009, Volume 4, Issue 8, pp. e6524 - e6524
Background: The dissection of complex traits of economic importance to the pig industry requires the availability of a significant number of genetic markers,... 
BIOLOGY | Genotype | Polymorphism, Single Nucleotide | Animals | Swine - genetics | Species Specificity | Sequence Analysis, DNA - methods | Enzymes | Genetic markers | Pork industry | Genomics | Animal genetic engineering | Genomes | Single nucleotide polymorphisms | Chromosomes | Zoology | Phylogeography | Animal sciences | Economic importance | Domestication | Identification | Single-nucleotide polymorphism | Breeding of animals | Assaying | Design | Studies | Hogs | Genotyping | Gene frequency | Swine | Livestock | Genetic testing | Dissection | Deoxyribonucleic acid--DNA | Polymorphism | Leerstoelgroep Fokkerij en genetica | Fokkerij en Genomica | Animal Breeding and Genomics | WIAS | Fokkerij en Genetica | Animal Breeding and Genetics | Deoxyribonucleic acid | DNA
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7. Full Text Regions of Homozygosity in the Porcine Genome: Consequence of Demography and the Recombination Landscape
by Bosse, M and Megens, H.J.W.C and Madsen, O and Paudel, Y and Frantz, L.A.F and Schook, L.B and Crooijmans, R.P.M.A and Groenen, M.A.M
Plos Genetics, ISSN 1553-7404, 2012, Volume 8, Issue 11, p. e1003100
Inbreeding has long been recognized as a primary cause of fitness reduction in both wild and domesticated populations. Consanguineous matings cause inheritance... 
GENETIC DIVERSITY | CONSERVATION | PIG BREEDS | SNP | GENETICS & HEREDITY | WILD BOAR | DOMESTICATION | EVOLUTIONARY HISTORY | MAP | RUNS | HUMAN-POPULATIONS | Sus scrofa - genetics | Haplotypes - genetics | Homozygote | Animals | Asia | Breeding | Recombination, Genetic | Europe | Inbreeding | High-Throughput Nucleotide Sequencing | Genome | Animal genetics | Heterozygosis | Research | Genomics | Heterozygosity | Haplotypes | Hogs | Demography | Population | Genetic diversity | Genomes | Breeding of animals | genetic diversity | human-populations | conservation | snp | pig breeds | wild boar | domestication | evolutionary history | runs | map
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8. Full Text The development and characterization of a 60K SNP chip for chicken
by Groenen, M.A.M and Megens, H.J.W.C and Zare, Y and Warren, W.C and Hillier, L.W and Crooijmans, R.P.M.A and Vereijken, A and Okimoto, R and Muir, W.M and Cheng, H.H
BMC Genomics, ISSN 1471-2164, 2011, Volume 12, Issue 1, pp. 274 - 274
Background In livestock species like the chicken, high throughput single nucleotide polymorphism (SNP) genotyping assays are increasingly being used for whole... 
ARRAY | GENOTYPING ASSAY | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | POLYMORPHISM | MAP | GENOME | Animals | Oligonucleotide Array Sequence Analysis | Chickens | Chromosome Mapping - methods | Genotype | Polymorphism, Single Nucleotide | Genetic Markers | High-Throughput Nucleotide Sequencing - methods | Sequence Analysis, DNA - methods | Physiological aspects | Genomes | Genetic aspects | Research | Single nucleotide polymorphisms | Health aspects | genome | polymorphism | genotyping assay | array | map
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9. Full Text Adult porcine genome-wide DNA methylation patterns support pigs as a biomedical model
by Schachtschneider, K.M and Madsen, O and Park, C and Rund, L.A and Groenen, M.A.M and Schook, L.B
BMC Genomics, ISSN 1471-2164, 2015, Volume 16, Issue 1, p. 743
Background: Pigs (Sus scrofa) provide relevant biomedical models to dissect complex diseases due to their anatomical, genetic, and physiological similarities... 
Adaptive evolution | Pigs | DNA methylation | Biomedical research | RNA-seq | CELLS | TRANSGENIC PIGS | CANCER | BIOMARKERS | EVOLUTION | ALIGNMENT | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | GENE-EXPRESSION | GENERATION | SELECTION | REVEALS | Genome-Wide Association Study | Reproducibility of Results | Gene Library | Epigenesis, Genetic | Gene Expression Regulation | Adaptation, Biological | Organ Specificity - genetics | DNA Methylation | Animals | Models, Biological | Swine | Alleles | CpG Islands | Female | High-Throughput Nucleotide Sequencing | Genomics - methods | Evolution, Molecular | Genetic variation | Wild boar | Genetic aspects | Disease susceptibility | Gene expression | Observations | Identification and classification | Animal experimentation | Medical research | Analysis | Liver | Genes | Physiological aspects | Medicine, Experimental | Models | Genetic transcription | Leerstoelgroep Fokkerij en genetica | Fokkerij en Genomica | Animal Breeding and Genomics | WIAS | Fokkerij en Genetica | Animal Breeding and Genetics
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