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1. Full Text Runs of homozygosity reveal signatures of positive selection for reproduction traits in breed and non-breed horses
by Metzger, Julia and Karwath, Matthias and Tonda, Raul and Beltran, Sergi and Águeda, Lídia and Gut, Marta and Gut, Ivo Glynne and Distl, Ottmar
BMC genomics, ISSN 1471-2164, 10/2015, Volume 16, Issue 1, pp. 764 - 764
Horse population | Runs of homozygosity | KITLG | Reproduction | Selection signature | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Homozygote | Phenotype | Animals | Breeding | Genomics | Horses - genetics | Selection, Genetic | Reproduction - genetics | Genotype | High-Throughput Nucleotide Sequencing | Polymorphism, Single Nucleotide | Embryonic development | Analysis | Genes | Physiological aspects | Single nucleotide polymorphisms | Natural selection | Biological diversity | Index Medicus
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2. DNA methylation analysis by pyrosequencing
by Tost, Jörg and Gut, Ivo G
Nature protocols, ISSN 1754-2189, 09/2007, Volume 2, Issue 9, pp. 2265 - 2275
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Adaptor Proteins, Signal Transducing - chemistry | Genomic Imprinting | MutL Protein Homolog 1 | Humans | Nuclear Proteins - metabolism | Nuclear Proteins - chemistry | Sulfites - chemistry | DNA Methylation | Base Composition | Polymerase Chain Reaction | CpG Islands | Adaptor Proteins, Signal Transducing - metabolism | Sequence Analysis, DNA - methods
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3. Full Text Single-cell transcriptome conservation in cryopreserved cells and tissues
by Guillaumet-Adkins, Amy and Rodríguez-Esteban, Gustavo and Mereu, Elisabetta and Mendez-Lago, Maria and Jaitin, Diego A and Villanueva, Alberto and Vidal, August and Martinez-Marti, Alex and Felip, Enriqueta and Vivancos, Ana and Keren-Shaul, Hadas and Heath, Simon and Gut, Marta and Amit, Ido and Gut, Ivo and Heyn, Holger
Genome Biology, ISSN 1474-7596, 03/2017, Volume 18, Issue 1, pp. 45 - 45
RNA sequencing | Patient-derived orthotopic xenograft | MARS-Seq | Cryopreservation | Transcriptomics | Single-cell genomics | Conservation | PDOX | Peripheral blood mononuclear cells | Smart-seq2 | PBMC | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Cell Line | Reproducibility of Results | Humans | Transcriptome | Gene Expression Profiling - methods | RNA Stability | Sequence Analysis, DNA | RNA - genetics | Animals | Heterografts | Neoplasms - genetics | Single-Cell Analysis - methods | Mice | Neoplasms - pathology | Cluster Analysis | Disease Models, Animal | Transcription | Preservation | Genomics | Principal components analysis | Genomes | Gene expression | Nitrogen | Ribonucleic acid--RNA | Experiments | Ovarian cancer | Stem cells | Index Medicus | Rna sequencing | Pdox | Mars-seq | Pbmc
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4. Full Text MetaTrans: An open-source pipeline for metatranscriptomics
by Martinez, Xavier and Pozuelo, Marta and Pascal, Victoria and Campos, David and Gut, Ivo and Gut, Marta and Azpiroz, Fernando and Guarner, Francisco and Manichanh, Chaysavanh
Scientific reports, ISSN 2045-2322, 05/2016, Volume 6, Issue 1, pp. 26447 - 26447
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Computers | Databases | Next-generation sequencing | Pipelines | rRNA | Data processing | Intestinal microflora | Gene expression | Gene mapping | Index Medicus | Transcriptomics | Microbiome
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5. Full Text Increased DNA methylation variability in type 1 diabetes across three immune effector cell types
by Paul, Dirk S and Teschendorff, Andrew E and Dang, Mary A.N and Lowe, Robert and Hawa, Mohammed I and Ecker, Simone and Beyan, Huriya and Cunningham, Stephanie and Fouts, Alexandra R and Ramelius, Anita and Burden, Frances and Farrow, Samantha and Rowlston, Sophia and Rehnstrom, Karola and Frontini, Mattia and Downes, Kate and Busche, Stephan and Cheung, Warren A and Ge, Bing and Simon, Marie-Michelle and Bujold, David and Kwan, Tony and Bourque, Guillaume and Datta, Avik and Lowy, Ernesto and Clarke, Laura and Flicek, Paul and Libertini, Emanuele and Heath, Simon and Gut, Marta and Gut, Ivo G and Ouwehand, Willem H and Pastinen, Tomi and Soranzo, Nicole and Hofer, Sabine E and Karges, Beate and Meissner, Thomas and Boehm, Bernhard O and Cilio, Corrado and Larsson, Helena Elding and Lernmark, Åke and Steck, Andrea K and Rakyan, Vardhman K and Beck, Stephan and Leslie, R. David
Nature communications, ISSN 2041-1723, 11/2016, Volume 7, Issue 1, pp. 13555 - 13555
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Index Medicus | Type 1 diabetes | Disease genetics | Epigenomics
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6. Full Text Tuning of Natural Killer Cell Reactivity by NKp46 and Helios Calibrates T Cell Responses
by Emilie Narni-Mancinelli and Baptiste N. Jaeger and Claire Bernat and Aurore Fenis and Sam Kung and Aude De Gassart and Sajid Mahmood and Marta Gut and Simon C. Heath and Jordi Estellé and Elodie Bertosio and Frédéric Vely and Louis N. Gastinel and Bruce Beutler and Bernard Malissen and Marie Malissen and Ivo G. Gut and Eric Vivier and Sophie Ugolini
Science (American Association for the Advancement of Science), ISSN 0036-8075, 1/2012, Volume 335, Issue 6066, pp. 344 - 348
T lymphocytes | Spleen | Receptors | Phenotypes | Reactivity | REPORTS | Infections | Mice | Natural killer cells | Genetic mutation | Tumors | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Classical genetics, quantitative genetics, hybrids | Biological and medical sciences | Vertebrata | Animals | Genetics of eukaryotes. Biological and molecular evolution | Antigens, Ly - genetics | Natural Cytotoxicity Triggering Receptor 1 - physiology | Natural Cytotoxicity Triggering Receptor 1 - antagonists & inhibitors | Genetic Complementation Test | Viral Load | Natural Cytotoxicity Triggering Receptor 1 - genetics | Listeriosis - immunology | Killer Cells, Natural - immunology | Transcription, Genetic | Antigens, Ly - physiology | Natural Cytotoxicity Triggering Receptor 1 - immunology | Antibodies, Monoclonal - immunology | Adaptive Immunity | Cell Line | DNA-Binding Proteins - physiology | Transcription Factors - physiology | Down-Regulation | Mice, Inbred C57BL | Mice, Transgenic | Transcription Factors - genetics | DNA-Binding Proteins - genetics | Herpesviridae Infections - virology | Antigens, Ly - immunology | Mutagenesis | Muromegalovirus - physiology | Antibodies, Blocking - immunology | Immunologic Memory | T-Lymphocytes - immunology | CD8-Positive T-Lymphocytes - immunology | Amino Acid Substitution | Herpesviridae Infections - immunology | Signal transduction | Cellular biology | Lymphocytes | Immune system | Antimicrobial agents | Index Medicus | Natural Cytotoxicity Triggering Receptor 1 | Killer Cells, Natural | Antigens, Ly | Listeriosis | CD8-Positive T-Lymphocytes | Life Sciences | Immunology | DNA-Binding Proteins | T-Lymphocytes | Antibodies, Blocking | Muromegalovirus | Antibodies, Monoclonal | Herpesviridae Infections | Transcription Factors
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7. Full Text Bigscale: An analytical framework for big-scale single-cell data
by Iacono, Giovanni and Mereu, Elisabetta and Guillaumet-Adkins, Amy and Corominas, Roser and Cusco, Ivon and Rodríguez-Esteban, Gustavo and Gut, Marta and Pérez-Jurado, Luis Alberto and Gut, Ivo and Heyn, Holger
Genome research, ISSN 1088-9051, 06/2018, Volume 28, Issue 6, pp. 878 - 890
Biochemistry & Molecular Biology | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Datasets | Transcription | Forebrain | Neural stem cells | Ribonucleic acid--RNA | Gene expression | Reelin protein | Progenitor cells | Index Medicus | RNA | Investigació | Cèl·lules | Method
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8. Full Text Selective single molecule sequencing and assembly of a human Y chromosome of African origin
by Kuderna, Lukas F. K and Lizano, Esther and Julià, Eva and Gomez-Garrido, Jessica and Serres-Armero, Aitor and Kuhlwilm, Martin and Alandes, Regina Antoni and Alvarez-Estape, Marina and Juan, David and Simon, Heath and Alioto, Tyler and Gut, Marta and Gut, Ivo and Schierup, Mikkel Heide and Fornas, Oscar and Marques-Bonet, Tomas
Nature communications, ISSN 2041-1723, 12/2019, Volume 10, Issue 1, pp. 4 - 8
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Chromosomes, Human, Y | DNA Methylation | Humans | Karyotyping | Molecular Sequence Annotation | CpG Islands | African Continental Ancestry Group - genetics | Sequence Analysis, DNA | Territory | Genomic analysis | Nucleotide sequence | Genomes | Porosity | Y Chromosomes | Chromosomes | Assembly | Deoxyribonucleic acid--DNA | DNA sequencing | Gene sequencing | Index Medicus | Genome assembly algorithms | Comparative genomics | Genomics
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9. Full Text In vivo binding of PRDM9 reveals interactions with noncanonical genomic sites
by Grey, Corinne and Clément, Julie A.J and Buard, Jérôme and Leblanc, Benjamin and Gut, Ivo and Gut, Marta and Duret, Laurent and De Massy, Bernard
Genome research, ISSN 1088-9051, 04/2017, Volume 27, Issue 4, pp. 580 - 590
Biochemistry & Molecular Biology | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Promoter Regions, Genetic | Animals | Spermatocytes - metabolism | Histone-Lysine N-Methyltransferase - metabolism | Nucleotide Motifs | Mice, Inbred C57BL | CCCTC-Binding Factor - metabolism | Protein Binding | Male | Mice | Genome | DNA Breaks, Double-Stranded | Research | Methyltransferases | Chromosomes | DNA | Index Medicus | Prdm9 binding | Dna double-strand breaks | Protein binding | Life Sciences | Genetics
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10. Full Text DNA sequencing – spanning the generations
by McGinn, Steven and Gut, Ivo Glynne
New biotechnology, ISSN 1871-6784, 05/2013, Volume 30, Issue 4, pp. 366 - 372
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Biochemical Research Methods | Science & Technology | Sequence Analysis, DNA - instrumentation | History, 21st Century | Nanotechnology - methods | History, 20th Century | Humans | Sequence Analysis, DNA - methods | Sequence Analysis, DNA - trends | Sequence Analysis, DNA - history | Genetic research | Nucleotide sequencing | Analysis | Genomics | DNA | DNA sequencing | Index Medicus
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