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Bioinformatics, ISSN 1367-4803, 03/2015, Volume 31, Issue 20, pp. 3350 - 3352
Although de novo assembly graphs contain assembled contigs (nodes), the connections between those contigs (edges) are difficult for users to access. Bandage (a... 
Computer Graphics | Computational Biology - methods | Genome, Bacterial | Humans | Chromosome Mapping | Software | Genome, Human | Genomics - methods | Sequence Analysis, DNA - methods | Searching | Lists | Tools | Graphs | Source code | Assemblies | Bioinformatics | Joints | Applications Notes
Journal Article
GENOME BIOLOGY, ISSN 1474-760X, 06/2019, Volume 20, Issue 1, pp. 129 - 10
BackgroundBasecalling, the computational process of translating raw electrical signal to nucleotide sequence, is of critical importance to the sequencing... 
Long-read sequencing | Basecalling | Oxford Nanopore | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENOME | GENETICS & HEREDITY | Salmonella | Accuracy | Tuna | Nucleotide sequence | Neural networks | Computer applications | Genomes | Methylation | Bioinformatics | Deoxyribonucleic acid--DNA
Journal Article
Journal of clinical microbiology, ISSN 0095-1137, 04/2019, Volume 57, Issue 6
exclusively colonises the human nasopharynx and can cause a variety of respiratory infections as well as invasive diseases including meningitis and sepsis. A... 
Journal Article
PloS one, ISSN 1932-6203, 2019, Volume 14, Issue 5, pp. e0217169 - e0217169
Clinical resistance against Bedaquiline, the first new anti-tuberculosis compound with a novel mechanism of action in over 40 years, has already been detected... 
Usage | Care and treatment | Tuberculosis | Gene mutations | Patient outcomes | Research | Rifampin | Index Medicus
Journal Article
PLoS computational biology, 11/2018, Volume 14, Issue 11, p. e1006583
Multiplexing, the simultaneous sequencing of multiple barcoded DNA samples on a single flow cell, has made Oxford Nanopore sequencing cost-effective for small... 
Journal Article
Journal of Antimicrobial Chemotherapy, ISSN 0305-7453, 03/2019, Volume 74, Issue 3, pp. 831 - 833
Journal Article
Bioinformatics, ISSN 1367-4803, 03/2019, Volume 35, Issue 6, pp. 1064 - 1066
Abstract Summary A common goal of microbiome studies is the elucidation of community composition and member interactions using counts of taxonomic units... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Applications Notes
Journal Article
Journal Article
Journal of Antimicrobial Chemotherapy, ISSN 0305-7453, 10/2019
Abstract Background The molecular structure of circulating enteric fever pathogens was studied using hospital-based genomic surveillance in a tertiary care... 
Journal Article
BMC evolutionary biology, 06/2018, Volume 18, Issue 1, p. 95
Recent developments in sequencing technologies make it possible to obtain genome sequences from a large number of isolates in a very short time. Bayesian... 
Journal Article
Gut, ISSN 0017-5749, 08/2017, Volume 66, Issue 8, pp. 1382 - 1389
Journal Article
Journal of Antimicrobial Chemotherapy, ISSN 0305-7453, 03/2019, Volume 74, Issue 3, pp. 831 - 833
Journal Article
The Journal of Antimicrobial Chemotherapy, ISSN 0305-7453, 09/2015, Volume 70, Issue 9, p. 2519
  The objective of this study was to locate the antibiotic resistance determinants in the multiply antibiotic-resistant Acinetobacter baumannii isolate D4. The... 
Antibiotics | Genomics | Gram-negative bacteria | Drug resistance
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