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Biochemistry, ISSN 0006-2960, 08/2019
Carbohydrates are one of the four major classes of biomolecules, often conjugated with proteins as glycoproteins or with lipids as glycolipids and participate... 
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 01/2018, Volume 46, Issue D1, pp. D296 - D302
Abstract MicroRNAs (miRNAs) are small non-coding RNAs of ∼ 22 nucleotides that are involved in negative regulation of mRNA at the post-transcriptional level.... 
PATHWAYS | PROTEIN | DATABASE | TRANSCRIPTOME | INTEGRATIVE ANALYSIS | BIOCHEMISTRY & MOLECULAR BIOLOGY | SITES | WIDE | IDENTIFICATION | CANCER | ASSOCIATION | Database Issue
Journal Article
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), ISSN 0302-9743, 2014, Volume 8916, pp. 36 - 46
Journal Article
Bioinformatics, ISSN 1367-4803, 08/2017, Volume 33, Issue 15, pp. 2281 - 2287
Motivation: Next-generation sequencing (NGS) provides a great opportunity to investigate genome-wide variation at nucleotide resolution. Due to the huge amount... 
ACCURATE | GENOMES | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | ALIGNER | BURROWS-WHEELER TRANSFORM | Original Papers
Journal Article
Bioinformatics, ISSN 1367-4803, 01/2018, Volume 34, Issue 2, pp. 190 - 197
Abstract Motivation In recent years, the massively parallel cDNA sequencing (RNA-Seq) technologies have become a powerful tool to provide high resolution... 
READ ALIGNMENT | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | ANNOTATION | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | ALIGNER | ALGORITHMS | Original Papers
Journal Article
Nature Communications, ISSN 2041-1723, 12/2018, Volume 9, Issue 1, pp. 5202 - 9
The programmable one-pot oligosaccharide synthesis method was designed to enable the rapid synthesis of a large number of oligosaccharides, using the software... 
REACTIVITY | GLOBO-H | GLYCOSYLATION | CHEMOENZYMATIC SYNTHESIS | MULTIDISCIPLINARY SCIENCES | Learning algorithms | Polysaccharides | Synthesis | Machine learning | Software | Oligosaccharides | Computer programs
Journal Article
Journal of the American Medical Informatics Association : JAMIA, ISSN 1067-5027, 08/2019, Volume 26, Issue 11, pp. 1227 - 1236
In this era of digitized health records, there has been a marked interest in using de-identified patient records for conducting various health related surveys.... 
Journal Article
Web Intelligence and Agent Systems, ISSN 1570-1263, 07/2015, Volume 13, Issue 2, pp. 123 - 133
Textual Entailment (TE) is the task of recognizing entailment, paraphrase, and contradiction relations between a given text pair. The goal of textual... 
artificial pairs | evaluation metrics | Textual entailment | rank correlation | RITE | Correlation | Tasks | Ranking | Intelligence | Correlation analysis | Data sets | Texts | Systems analysis
Journal Article
Analytical Chemistry, ISSN 0003-2700, 02/2015, Volume 87, Issue 4, pp. 2466 - 2473
Journal Article
by Jiang, Yuxiang and Oron, Tal Ronnen and Clark, Wyatt T and Bankapur, Asma R and Anea, D', Daniel and Lepore, Rosalba and Funk, Christopher S and Kahanda, Indika and Verspoor, Karin M and Ben-Hur, Asa and Koo, Da Chen Emily and Penfold-Brown, Duncan and Shasha, Dennis and Youngs, Noah and Bonneau, Richard and Lin, Alexana and Sahraeian, Sayed M.E and Martelli, Pier Luigi and ti, Giuseppe and Casadio, Rita and Cao, Renzhi and Zhong, Zhaolong and Cheng, Jianlin and Altenhoff, Aian and Skunca, Nives and Dessimoz, Christophe and Dogan, Tunca and Hakala, Kai and Kaewphan, Suwisa and Mehryary, Farrokh and Salakoski, Tapio and Ginter, Filip and Fang, Hai and Smithers, Ben and Oates, Matt and Gough, Julian and Törönen, Petri and Koskinen, Patrik and Holm, Liisa and Chen, Ching Tai and Hsu, Wen Lian and Bryson, Kevin and Cozzetto, Domenico and Minneci, Federico and Jones, David T and Chapman, Samuel and BKC, Dukka and Khan, Ishita K and Kihara, Daisuke and Ofer, Dan and Rappoport, Nadav and Stern, Amos and Cibrian-Uhalte, Elena and Denny, Paul and Foulger, Rebecca E and Hieta, Reija and Legge, Duncan and Lovering, Ruth C and Magrane, Michele and Melidoni, Anna N and Mutowo-Meullenet, Prudence and Pichler, Klemens and Shypitsyna, Aleksana and Li, Biao and Zakeri, Pooya and ElShal, Sarah and Tranchevent, Léon Charles and Das, Sayoni and Dawson, Natalie L and Lee, David and Lees, Jonathan G and Sillitoe, Ian and Bhat, Prajwal and Nepusz, Tamás and Romero, Alfonso E and Sasidharan, Rajkumar and Yang, Haixuan and Paccanaro, Alberto and Gillis, Jesse and Sedeño-Cortés, Aiana E and Pavlidis, Paul and Feng, Shou and Cejuela, Juan M and Goldberg, Tatyana and Hamp, Tobias and Richter, Lothar and Salamov, Asaf and Gabaldon, Toni and Marcet-Houben, Marina and Supek, Fran and Gong, Qingtian and Ning, Wei and Zhou, Yuanpeng and Tian, Weidong and Falda, Marco and Fontana, Paolo and Lavezzo, Enrico and Toppo, Stefano and Ferrari, Carlo and Giollo, Manuel and ...
Genome Biology, ISSN 1474-7596, 2016, Volume 17, Issue 1, p. 184
Journal Article
IEEE Transactions on Knowledge and Data Engineering, ISSN 1041-4347, 09/2016, Volume 28, Issue 9, pp. 2494 - 2507
Journal Article
ANALYTICAL CHEMISTRY, ISSN 0003-2700, 08/2019, Volume 91, Issue 15, pp. 9403 - 9406
Protein and peptide identification and quantitation are essential tasks in proteomics research and involve a series of steps in analyzing mass spectrometry... 
CHEMISTRY, ANALYTICAL | TANDEM | PROTEINS | MS/MS | QUANTIFICATION | STATISTICAL-MODEL | Data analysis | Websites | Peptides | Pipelines | Mass spectroscopy | Quantitation | Software development tools | Data bases | Computer programs | Proteins | Interfaces | Software reviews | Databases | Proteomics | Graphical user interface | Data search | User interfaces | Data base management systems | Software | Comics | Mass spectrometry
Journal Article
Journal Article
Leibniz International Proceedings in Informatics, LIPIcs, ISSN 1868-8969, 12/2018, Volume 123, p. XI
Conference Proceeding
SCIENTIFIC REPORTS, ISSN 2045-2322, 11/2019, Volume 9, Issue 1, pp. 1 - 11
N-linked glycosylation is one of the predominant post-translational modifications involved in a number of biological functions. Since experimental... 
PROTEIN | BINDING | MULTIDISCIPLINARY SCIENCES | GLYCANS | PRECISION | Proteins | Asparagine | Post-translation | Glycoproteins | Glycosylation | Internet | Secondary structure | Protein structure
Journal Article
Analytical Chemistry, ISSN 0003-2700, 12/2017, Volume 89, Issue 24, p. 13128
Top-down proteomics using liquid chromatogram coupled with mass spectrometry has been increasingly applied for analyzing intact proteins to study genetic... 
Alternative splicing | Yeast | Downloading | Splicing | Tools | Mass spectroscopy | Spectra | Genetic diversity | Quantitation | Molecular weight | Proteins | Accuracy | Deconvolution | Algorithms | Proteomics | Standard data | Post-translation | Dynamic programming | Comics | Mass spectrometry
Journal Article
Analytical Chemistry, ISSN 0003-2700, 02/2015, Volume 87, Issue 4, pp. 2143 - 2151
Metabolite identification remains a bottleneck in mass spectrometry (MS)-based metabolomics. Currently, this process relies heavily on tandem mass spectrometry... 
CHEMISTRY, ANALYTICAL | PROFILE | DATABASE | ANNOTATION | RULES | FORMULAS | TOOL | Animals | Diet | Ions - analysis | Metabolome | Rats | Mice | Chromatography, Liquid - methods | Diabetes Mellitus, Experimental - metabolism | Ions - metabolism | Metabolomics - methods | Tandem Mass Spectrometry - methods | Metabolomics | Usage | Liquid chromatography | Research | Metabolites | Mass spectrometry
Journal Article
IEEE/ACM Transactions on Audio, Speech and Language Processing (TASLP), ISSN 2329-9290, 06/2015, Volume 23, Issue 6, pp. 957 - 969
Extractive speech summarization, which purports to select an indicative set of sentences from a spoken document so as to succinctly represent the most... 
KL divergence | language modeling | speech summarization | clarity measure | relevance modeling | Semantics | Speech recognition | Speech | Vectors | Speech processing | Clarity measure | Context modeling | IEEE transactions | ACOUSTICS | INFORMATION | TEXT | ENGINEERING, ELECTRICAL & ELECTRONIC
Journal Article