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by Bell, D and Berchuck, A and Birrer, M and Chien, J and Cramer, D.W and Dao, F and Dhir, R and Disaia, P and Gabra, H and Glenn, P and Godwin, A.K and Gross, J and Hartmann, L and Huang, M and Huntsman, D.G and Iacocca, M and Imielinski, M and Kalloger, S and Karlan, B.Y and Levine, D.A and Mills, G.B and Morrison, C and Mutch, D and Olvera, N and Orsulic, S and Park, K and Petrelli, N and Rabeno, B and Rader, J.S and Sikic, B.I and Smith-Mccune, K and Sood, A.K and Bowtell, D and Penny, R and Testa, J.R and Chang, K and Dinh, H.H and Drummond, J.A and Fowler, G and Gunaratne, P and Hawes, A.C and Kovar, C.L and Lewis, L.R and Morgan, M.B and Newsham, I.F and Santibanez, J and Reid, J.G and Trevino, L.R and Wu, Y.-Q and Wang, M and Muzny, D.M and Wheeler, D.A and Gibbs, R.A and Getz, G and Lawrence, M.S and Cibulskis, K and Sivachenko, A.Y and Sougnez, C and Voet, D and Wilkinson, J and Bloom, T and Ardlie, K and Fennell, T and Baldwin, J and Gabriel, S and Lander, E.S and Ding, L and Fulton, R.S and Koboldt, D.C and McLellan, M.D and Wylie, T and Walker, J and O'Laughlin, M and Dooling, D.J and Fulton, L and Abbott, R and Dees, N.D and Zhang, Q and Kandoth, C and Wendl, M and Schierding, W and Shen, D and Harris, C.C and Schmidt, H and Kalicki, J and Delehaunty, K.D and Fronick, C.C and Demeter, R and Cook, L and Wallis, J.W and Lin, L and Magrini, V.J and Hodges, J.S and Eldred, J.M and Smith, S.M and Pohl, C.S and Vandin, F and Raphael, B.J and Weinstock, G.M and Mardis, E.R and ... and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network and The Cancer Genome Atlas Research Network
Nature, ISSN 0028-0836, 06/2011, Volume 474, Issue 7353, pp. 609 - 615
Journal Article
by Thorsson, Vesteinn and Thorsson, Vésteinn and Gibbs, Richard A and Gibbs, David L and Brown, Scott D and Wolf, Gregory and Wolf, Denise and Bortone, Dante S and Ou Yang, Tai-Hsien and Porta-Pardo, Eduard and Gao, Galen F and Gao, Jianjiong and Plaisier, Christopher L and Eddy, James A and Ziv, Elad and Culhane, Aedin C and Paull, Evan O and Sivakumar, I.K. Ashok and Gentles, Andrew J and Malhotra, Raunaq and Farshidfar, Farshad and Colaprico, Antonio and Parker, Joel S and Mose, Lisle E and Vo, Nam Sy and Liu, Wenbin and Liu, Jianfang and Liu, Jia and Liu, Yuexin and Liu, Xiuping and Rader, Janet and Dhankani, Varsha and Reynolds, Sheila and Reynolds, Sheila M and Bowlby, Reanne and Califano, Andrea and Cherniack, Andrew D and Anastassiou, Dimitris and Bedognetti, Davide and Mokrab, Younes and Newman, Aaron M and Rao, Arvind and Chen, Amy and Chen, Chu and Chen, Ken and Krasnitz, Alexander and Hu, Jianhong and Hu, Hai and Malta, Tathiane M and Noushmehr, Houtan and Pedamallu, Chandra Sekhar and Bullman, Susan and Ojesina, Akinyemi I and Lamb, Andrew and Zhou, Wanding and Shen, Hui and Choueiri, Toni K and Weinstein, John N and Guinney, Justin and Saltz, Joel and Holt, Robert and Holt, Robert A and Rabkin, Charles S and Caesar-Johnson, Samantha J and Demchok, John A and Felau, Ina and Kasapi, Melpomeni and Ferguson, Martin L and Hutter, Carolyn M and Sofia, Heidi J and Tarnuzzer, Roy and Wang, Jioajiao and Wang, Min and Wang, Linghua and Wang, Zhining and Wang, Timothy and Wang, Jing and Yang, Ju Dong and Yang, Hannah and Yang, Liming and Yang, Ian and Zenklusen, Jean C and Zhang, Jiashan (Julia) and Zhang, Jiexin and Zhang, Lizhi and Zhang, Wei and Zhang, Hongzheng and Zhang, Hailei and Zhang, Hongxin and Chudamani, Sudha and Lolla, Laxmi and Naresh, Rashi and Pihl, Todd and Sun, Yichao and Sun, Qiang and Wan, Yunhu and Wu, Ye and Cho, Juok and DeFreitas, Timothy and Frazer, Scott and ... and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network
Immunity, ISSN 1074-7613, 04/2018, Volume 48, Issue 4, pp. 812 - 830.e14
We performed an extensive immunogenomic analysis of more than 10,000 tumors comprising 33 diverse cancer types by utilizing data compiled by TCGA. Across... 
tumor immunology | immunotherapy | cancer genomics | integrative network analysis | immuno-oncology | tumor microenvironment | immune subtypes | immunomodulatory | GENOMIC ANALYSES | INFORMATION | T-CELL-RECEPTOR | REGULATORY NETWORK | CLASSIFICATION | IMMUNOLOGY | SEQUENCING DATA | SOMATIC MUTATIONS | COMPREHENSIVE ANALYSIS | PREDICTION | REVEALS | Transforming Growth Factor beta - immunology | Prognosis | Humans | Middle Aged | Th1-Th2 Balance - physiology | Male | Neoplasms - classification | Wound Healing - immunology | Young Adult | Transforming Growth Factor beta - genetics | Neoplasms - genetics | Neoplasms - immunology | Interferon-gamma - immunology | Adolescent | Aged, 80 and over | Adult | Female | Aged | Interferon-gamma - genetics | Wound Healing - genetics | Genomics - methods | Child | Macrophages - immunology | Cell proliferation | Cluster analysis | Transcription | Copy number | p53 Protein | Lung cancer | Genomics | Aneuploidy | Lymphocytes T | Genomes | Cell interactions | Macrophages | Immunotherapy | DNA methylation | Deoxyribonucleic acid--DNA | Immune system | Medical research | Wound healing | Immunomodulation | MiRNA | Stockholders | Inflammation | T cell receptors | Communications networks | Gene expression | White blood cells | Inventors | Medical prognosis | γ-Interferon | Mutation | Cancer | Tumors | Immune Subtypes | Integrative Network Analysis | Cancer Genomics | Immuno-oncology | Tumor immunology
Journal Article
by Torgerson, Dara G and Ampleford, Elizabeth J and Chiu, Grace Y and Gauderman, W James and Gignoux, Christopher R and Graves, Penelope E and Himes, Blanca E and Levin, Albert M and Mathias, Rasika A and Hancock, Dana B and Baurley, James W and Eng, Celeste and Stern, Debra A and Celedón, Juan C and Rafaels, Nicholas and Capurso, Daniel and Conti, David V and Roth, Lindsey A and Soto-Quiros, Manuel and Togias, Alkis and Li, Xingnan and Myers, Rachel A and Romieu, Isabelle and Berg, David J. Van Den and Hu, Donglei and Hansel, Nadia N and Hernandez, Ryan D and Israel, Elliott and Salam, Muhammad T and Galanter, Joshua and Avila, Pedro C and Avila, Lydiana and Rodriquez-Santana, Jose R and Chapela, Rocio and Rodriguez-Cintron, William and Diette, Gregory B and Adkinson, N Franklin and Abel, Rebekah A and Ross, Kevin D and Shi, Min and Faruque, Mezbah U and Dunston, Georgia M and Watson, Harold R and Mantese, Vito J and Ezurum, Serpil C and Liang, Liming and Ruczinski, Ingo and Ford, Jean G and Huntsman, Scott and Chung, Kian Fan and Vora, Hita and Li, Xia and Calhoun, William J and Castro, Mario and Sienra-Monge, Juan J and Del Rio-Navarro, Blanca and Deichmann, Klaus A and Heinzmann, Andrea and Wenzel, Sally E and Busse, William W and Gern, James E and Lemanske, Robert F and Beaty, Terri H and Bleecker, Eugene R and Raby, Benjamin A and Meyers, Deborah A and London, Stephanie J and Gilliland, Frank D and Burchard, Esteban G and Martinez, Fernando D and Weiss, Scott T and Williams, L Keoki and Barnes, Kathleen C and Ober, Carole and Nicolae, Dan L and Study African Amer Asthma and GRAAD Study and CAMP and HARBORS Study and CARE Network and Study Genes Environm Admixture and SAPPHIRE and Mexico City Childhood Asthma and Childrens Hlth Study and Childhood Asthma Management Program (CAMP) and Genetic Research on Asthma in African Diaspora (GRAAD) Study and Childhood Asthma Research and Education (CARE) Network and Genetics of Asthma in Latino Americans (GALA) Study, Study of Genes-Environment and Admixture in Latino Americans (GALA2) and Study of African Americans, Asthma, Genes & Environments (SAGE) and Children's Health Study (CHS) and HARBORS study and Mexico City Childhood Asthma Study (MCAAS) and Study of Asthma Phenotypes and Pharmacogenomic Interactions by Race-Ethnicity (SAPPHIRE) and Genetic Research on Asthma in the African Diaspora (GRAAD) Study and Genetics of Asthma in Latino Americans (GALA) Study, the Study of Genes-Environment and Admixture in Latino Americans (GALA2) and the Study of African Americans, Asthma, Genes & Environments (SAGE)
Nature Genetics, ISSN 1061-4036, 09/2011, Volume 43, Issue 9, pp. 887 - 892
Journal Article
by Sieh, Weiva, PhD and Köbel, Martin, Dr and Longacre, Teri A, Prof and Bowtell, David D, Prof and deFazio, Anna, PhD and Goodman, Marc T, PhD and Høgdall, Estrid, PhD and Deen, Suha, Prof and Wentzensen, Nicolas, MD and Moysich, Kirsten B, Prof and Brenton, James D, MD and Clarke, Blaise A, MD and Menon, Usha, Prof and Gilks, C Blake, Prof and Kim, Andre, MPH and Madore, Jason, MS and Fereday, Sian, BSc and George, Joshy, MEng and Galletta, Laura, BSc and Lurie, Galina, MD and Wilkens, Lynne R, DrPH and Carney, Michael E, MD and Thompson, Pamela J, MPH and Matsuno, Rayna K, PhD and Kjær, Susanne Krüger, Prof and Jensen, Allan, PhD and Høgdall, Claus, Prof and Kalli, Kimberly R, PhD and Fridley, Brooke L, PhD and Keeney, Gary L, MD and Vierkant, Robert A, MS and Cunningham, Julie M, PhD and Brinton, Louise A, PhD and Yang, Hannah P, PhD and Sherman, Mark E, MD and García-Closas, Montserrat, Prof and Lissowska, Jolanta, PhD and Odunsi, Kunle, Prof and Morrison, Carl, MD and Lele, Shashikant, Prof and Bshara, Wiam, MD and Sucheston, Lara, PhD and Jimenez-Linan, Mercedes, MD and Driver, Kristy, BSc and Alsop, Jennifer, BA and Mack, Marie and McGuire, Valerie, PhD and Rothstein, Joseph H, MS and Rosen, Barry P, Prof and Bernardini, Marcus Q, MD and Mackay, Helen, MD and Oza, Amit, Prof and Wozniak, Eva L, BSc and Benjamin, Elizabeth, MD and Gentry-Maharaj, Aleksandra, PhD and Gayther, Simon A, Prof and Tinker, Anna V, MD and Prentice, Leah M, PhD and Chow, Christine, BMLSc and Anglesio, Michael S, PhD and Johnatty, Sharon E, PhD and Chenevix-Trench, Georgia, Prof and Whittemore, Alice S, Prof and Pharoah, Paul DP, Prof and Goode, Ellen L, PhD and Huntsman, David G, Prof and Ramus, Susan J, PhD
Lancet Oncology, The, ISSN 1470-2045, 2013, Volume 14, Issue 9, pp. 853 - 862
Journal Article
by Hoadley, Katherine A and Yau, Christina and Hinoue, Toshinori and Wolf, Denise M and Wolf, Gregory and Lazar, Alexander J and Drill, Esther and Shen, Ronglai and Shen, Hui and Taylor, Alison M and Taylor, Barry S and Cherniack, Andrew D and Thorsson, Vesteinn and Thorsson, Vésteinn and Akbani, Rehan and Bowlby, Reanne and Wong, Tina and Wong, Christopher K and Wiznerowicz, Maciej and Sanchez-Vega, Francisco and Robertson, A. Gordon and Schneider, Barbara G and Lawrence, Michael S and Noushmehr, Houtan and Malta, Tathiane M and Caesar-Johnson, Samantha J and Demchok, John A and Felau, Ina and Kasapi, Melpomeni and Ferguson, Martin L and Hutter, Carolyn M and Sofia, Heidi J and Tarnuzzer, Roy and Wang, Jing and Wang, Linghua and Wang, Timothy and Wang, Min and Wang, Jioajiao and Wang, Zhining and Yang, Liming and Yang, Ju Dong and Yang, Ian and Yang, Hannah and Zenklusen, Jean C and Zhang, Hailei and Zhang, Wei and Zhang, Jiashan (Julia) and Zhang, Lizhi and Zhang, Jiexin and Zhang, Hongxin and Zhang, Hongzheng and Chudamani, Sudha and Liu, Wenbin and Liu, Jia and Liu, Yuexin and Liu, Xiuping and Lolla, Laxmi and Naresh, Rashi and Pihl, Todd and Sun, Qiang and Sun, Yichao and Wan, Yunhu and Wu, Ye and Cho, Juok and DeFreitas, Timothy and Frazer, Scott and Gehlenborg, Nils and Getz, Gad and Heiman, David I and Kim, Jaegil and Lin, Pei and Meier, Sam and Noble, Michael S and Saksena, Gordon and Voet, Doug and Bernard, Brady and Chambwe, Nyasha and Dhankani, Varsha and Knijnenburg, Theo and Kramer, Roger and Leinonen, Kalle and Miller, Michael and Miller, Judy and Miller, Christopher A and Reynolds, Sheila and Shmulevich, Ilya and Broom, Bradley M and Hegde, Apurva M and Ju, Zhenlin and Kanchi, Rupa S and Korkut, Anil and Li, Wei and Li, Jun and Liang, Han and Ling, Shiyun and Lu, Yiling and Mills, Gordon B and Ng, Kwok-Shing and Rao, Arvind and Ryan, Michael and ... and Cancer Genome Atlas Network
Cell, ISSN 0092-8674, 04/2018, Volume 173, Issue 2, pp. 291 - 304.e6
We conducted comprehensive integrative molecular analyses of the complete set of tumors in The Cancer Genome Atlas (TCGA), consisting of approximately 10,000... 
genome | organs | tissues | transcriptome | methylome | cancer | cell-of-origin | TCGA | proteome | subtypes | INTEGRATED GENOMIC CHARACTERIZATION | ACCURATE | SIMILARITIES | BIOCHEMISTRY & MOLECULAR BIOLOGY | UNKNOWN PRIMARY | SIGNATURE | BREAST | DISCOVERY | CELL BIOLOGY
Journal Article