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1. Full Text Comprehensive genomic characterization of squamous cell lung cancers
by Hammerman, Peter S and Voet, Doug and Lawrence, Michael S and Voet, Doug and Jing, Rui and Cibulskis, Kristian and Sivachenko, Andrey and Stojanov, Petar and McKenna, Aaron and Lander, Eric S and Gabriel, Stacey and Getz, Gad and Imielinski, Marcin and Helman, Elena and Hernandez, Bryan and Pho, Nam H and Meyerson, Matthew and Chu, Andy and Hye-Chun, Jung E and Mungall, Andrew J and Pleasance, Erin and Robertson, A. Gordon and Sipahimalani, Payal and Stoll, Dominik and Balasundaram, Miruna and Birol, Inanc and Butterfield, Yaron S.N and Chuah, Eric and Coope, Robin J.N and Corbett, Richard and Dhalla, Noreen and Guin, Ranabir and He, An and Hirst, Carrie and Hirst, Martin and Holt, Robert A and Lee, Darlene and Li, Haiyan I and Mayo, Michael and Moore, Richard A and Mungall, Karen and Nip, Ka Ming and Olshen, Adam and Schein, Jacqueline E and Slobodan, Jared R and Tam, Angela and Thiessen, Nina and Varhol, Richard and Zeng, Thomas and Zhao, Yongjun and Jones, Steven J.M and Marra, Marco A and Saksena, Gordon and Cherniack, Andrew D and Schumacher, Stephen E and Tabak, Barbara and Carter, Scott L and Nguyen, Huy and Onofrio, Robert C and Crenshaw, Andrew and Ardlie, Kristin and Beroukhim, Rameen and Winckler, Wendy and Protopopov, Alexei and Zhang, Jianhua and Hadjipanayis, Angela and Lee, Semin and Xi, Ruibin and Yang, Lixing and Ren, Xiaojia and Zhang, Hailei and Shukla, Sachet and Chen, Peng-Chieh and Haseley, Psalm and Lee, Eunjung and Chin, Lynda and Park, Peter J and Kucherlapati, Raju and Socci, Nicholas D and Liang, Yupu and Schultz, Nikolaus and Borsu, Laetitia and Lash, Alex E and Viale, Agnes and Sander, Chris and Ladanyi, Marc and Auman, J. Todd and Hoadley, Katherine A and Wilkerson, Matthew D and Shi, Yan and Liquori, Christina and Meng, Shaowu and Li, Ling and Turman, Yidi J and Topal, Michael D and Tan, Donghui and Waring, Scot and Buda, Elizabeth and Walsh, Jesse and Jones, Corbin D and ... and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network and The Cancer Genome Atlas Research Network
Nature (London), ISSN 0028-0836, 09/2012, Volume 489, Issue 7417, pp. 519 - 525
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Tumors of the respiratory system and mediastinum | Biological and medical sciences | Medical sciences | Pneumology | Lung Neoplasms - genetics | Lung Neoplasms - drug therapy | Adenocarcinoma of Lung | Carcinoma, Squamous Cell - genetics | Carcinoma, Squamous Cell - metabolism | Genomics | Humans | Lung Neoplasms - metabolism | Gene Expression Regulation, Neoplastic | Mutation Rate | Gene Expression Profiling | Phosphatidylinositol 3-Kinases - metabolism | Signal Transduction - genetics | Genes, p53 - genetics | Molecular Targeted Therapy | Mutation - genetics | Adenocarcinoma - drug therapy | Genes, p16 | Genome, Human - genetics | Adenocarcinoma - metabolism | Carcinoma, Squamous Cell - drug therapy | DNA Mutational Analysis | Gene Deletion | Adenocarcinoma - genetics | Squamous cell carcinoma | Lung cancer | Genetic research | Genetic aspects | Research | Observations | Genetic screening | Mortality | Cell cycle | DNA methylation | Genetics | Genomes | Mutation | Kinases | Chromosomes | Ovarian cancer | Index Medicus
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2. Full Text Comprehensive genomic analysis identifies SOX2 as a frequently amplified gene in small-cell lung cancer
by Rudin, Charles M and Durinck, Steffen and Stawiski, Eric W and Poirier, John T and Modrusan, Zora and Shames, David S and Bergbower, Emily A and Guan, Yinghui and Shin, James and Guillory, Joseph and Rivers, Celina Sanchez and Foo, Catherine K and Bhatt, Deepali and Stinson, Jeremy and Gnad, Florian and Haverty, Peter M and Gentleman, Robert and Chaudhuri, Subhra and Janakiraman, Vasantharajan and Jaiswal, Bijay S and Parikh, Chaitali and Yuan, Wenlin and Zhang, Zemin and Koeppen, Hartmut and Wu, Thomas D and Stern, Howard M and Yauch, Robert L and Huffman, Kenneth E and Paskulin, Diego D and Illei, Peter B and Varella-Garcia, Marileila and Gazdar, Adi F and De Sauvage, Frederic J and Bourgon, Richard and Minna, John D and Brock, Malcolm V and Seshagiri, Somasekar
Nature genetics, ISSN 1061-4036, 10/2012, Volume 44, Issue 10, pp. 1111 - 1116
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Diverse techniques | Molecular and cellular biology | Genetics of eukaryotes. Biological and molecular evolution | Lung Neoplasms - genetics | Gene Expression | Genome-Wide Association Study | Protein Kinases - genetics | Humans | Lung Neoplasms - metabolism | Molecular Sequence Data | Small Cell Lung Carcinoma - genetics | DNA Copy Number Variations | SOXB1 Transcription Factors - metabolism | Exome | Small Cell Lung Carcinoma - metabolism | Gene Amplification | SOXB1 Transcription Factors - genetics | DNA Mutational Analysis | Oncogene Proteins, Fusion - genetics | Base Sequence | Cell Line, Tumor | High-Throughput Nucleotide Sequencing | Mutation | Physiological aspects | Lung cancer, Small cell | Genetic aspects | Research | Gene mutations | Protein kinases | Proteins | Genomes | Bioinformatics | Genes | Index Medicus
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3. Full Text Napsin A and thyroid transcription factor-1 expression in carcinomas of the lung, breast, pancreas, colon, kidney, thyroid, and malignant mesothelioma
by Bishop, Justin A., MD and Sharma, Rajni, PhD and Illei, Peter B., MD
Human pathology, ISSN 0046-8177, 2010, Volume 41, Issue 1, pp. 20 - 25
Pathology | Napsin A | Thyroid transcription factor-1 (TTF-1) | Lung carcinoma | Life Sciences & Biomedicine | Science & Technology | Tumors of the respiratory system and mediastinum | Biological and medical sciences | Investigative techniques, diagnostic techniques (general aspects) | Medical sciences | Pathology. Cytology. Biochemistry. Spectrometry. Miscellaneous investigative techniques | Pneumology | Immunohistochemistry | Neoplasms - metabolism | Thyroid Nuclear Factor 1 | Pancreatic Neoplasms - metabolism | Tissue Array Analysis | Humans | Lung Neoplasms - metabolism | Nuclear Proteins - metabolism | Kidney Neoplasms - metabolism | Mesothelioma - diagnosis | Colonic Neoplasms - metabolism | Breast Neoplasms - metabolism | Transcription Factors - metabolism | Adenocarcinoma - diagnosis | Adenocarcinoma - metabolism | Mesothelioma - metabolism | Aspartic Acid Endopeptidases - metabolism | Biomarkers, Tumor - metabolism | Female | Lung Neoplasms - diagnosis | Thyroid Neoplasms - metabolism | Squamous cell carcinoma | Thyroid diseases | Respiratory agents | Breast cancer | Metastasis | Aspartic proteinases | Proteins | Thyroid cancer | Colon | Pancreas | Surfactants | Tumors | Skin cancer | Index Medicus
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4. Full Text Comprehensive molecular profiling of lung adenocarcinoma
by Collisson, Eric A and Campbell, Joshua D and Brooks, Angela N and Berger, Alice H and Lee, William and Chmielecki, Juliann and Beer, David G and Cope, Leslie and Creighton, Chad J and Danilova, Ludmila and Ding, Li and Getz, Gad and Hammerman, Peter S and Hayes, D. Neil and Hernandez, Bryan and Herman, James G and Heymach, John V and Jurisica, Igor and Kucherlapati, Raju and Kwiatkowski, David and Ladanyi, Marc and Robertson, Gordon and Schultz, Nikolaus and Shen, Ronglai and Sinha, Rileen and Sougnez, Carrie and Tsao, Ming-Sound and Travis, William D and Weinstein, John N and Wigle, Dennis A and Wilkerson, Matthew D and Chu, Andy and Cherniack, Andrew D and Hadjipanayis, Angela and Rosenberg, Mara and Weisenberger, Daniel J and Laird, Peter W and Radenbaugh, Amie and Ma, Singer and Stuart, Joshua M and Byers, Lauren Averett and Baylin, Stephen B and Govindan, Ramaswamy and Meyerson, Matthew and Rosenberg, Mara and Gabriel, Stacey B and Cibulskis, Kristian and Sougnez, Carrie and Kim, Jaegil and Stewart, Chip and Lichtenstein, Lee and Lander, Eric S and Lawrence, Michael S and Getz and Kandoth, Cyriac and Fulton, Robert and Fulton, Lucinda L and McLellan, Michael D and Wilson, Richard K and Ye, Kai and Fronick, Catrina C and Maher, Christopher A and Miller, Christopher A and Wendl, Michael C and Cabanski, Christopher and Ding, Li and Mardis, Elaine and Govindan, Ramaswamy and Creighton, Chad J and Wheeler, David and Balasundaram, Miruna and Butterfield, Yaron S. N and Carlsen, Rebecca and Chu, Andy and Chuah, Eric and Dhalla, Noreen and Guin, Ranabir and Hirst, Carrie and Lee, Darlene and Li, Haiyan I and Mayo, Michael and Moore, Richard A and Mungall, Andrew J and Schein, Jacqueline E and Sipahimalani, Payal and Tam, Angela and Varhol, Richard and Robertson, A. Gordon and Wye, Natasja and Thiessen, Nina and Holt, Robert A and Jones, Steven J. M and Marra, Marco A and Campbell, Joshua D and Brooks, Angela N and Chmielecki, Juliann and Imielinski, Marcin and Onofrio, Robert C and Hodis, Eran and Zack, Travis and ... and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network and The Cancer Genome Atlas Research Network
Nature (London), ISSN 0028-0836, 07/2014, Volume 511, Issue 7511, pp. 543 - 550
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Lung Neoplasms - genetics | Oncogenes - genetics | Adenocarcinoma - pathology | Adenocarcinoma of Lung | Genomics | Humans | Gene Expression Regulation, Neoplastic | Lung Neoplasms - pathology | Male | Gene Dosage | Transcriptome - genetics | Mutation - genetics | Molecular Typing | Sex Factors | Cell Cycle Proteins - genetics | Female | Adenocarcinoma - genetics | Adenocarcinoma | Usage | MicroRNA | Death | Research | Nucleotide sequencing | Methylation | Pathology, Molecular | Risk factors | DNA sequencing | Proteins | Genotype & phenotype | Genes | Mortality | Lung cancer | DNA methylation | Genomes | Mutation | Molecular biology | Deoxyribonucleic acid--DNA | Tumors | Index Medicus
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5. Full Text Complex Sources of Variation in Tissue Expression Data: Analysis of the GTEx Lung Transcriptome
by McCall, Matthew N and Illei, Peter B and Halushka, Marc K
American journal of human genetics, ISSN 0002-9297, 09/2016, Volume 99, Issue 3, pp. 624 - 635
lung | GTEx | type II pneumocytes | variance | gene expression | heterogeneity | Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Datasets as Topic | Ventilator-Induced Lung Injury - genetics | Epithelium - metabolism | Humans | Transcriptome | Axonemal Dyneins - genetics | Genotype | Ventilator-Induced Lung Injury - pathology | Alveolar Epithelial Cells - metabolism | Acute-Phase Proteins - genetics | Organ Specificity | Bronchi - metabolism | Pulmonary Surfactant-Associated Protein C - genetics | Lung - metabolism | Dyneins - genetics | Mucins - genetics | Pulmonary Surfactant-Associated Protein A - genetics | Genotype & phenotype | Transcription factors | Lungs | Gene expression | Sampling | Tissues | Index Medicus
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6. Full Text Comprehensive molecular profiling of lung adenocarcinoma: The cancer genome atlas research network
by Collisson, Eric A and Campbell, Joshua D and Brooks, Angela N and Berger, Alice H and Lee, William and Chmielecki, Juliann and Beer, David G and Cope, Leslie and Creighton, Chad J and Danilova, Ludmila and Ding, Li and Getz, Gad and Hammerman, Peter S and Hayes, D. Neil and Hernandez, Bryan and Herman, James G and Heymach, John V and Jurisica, Igor and Kucherlapati, Raju and Kwiatkowski, David and Ladanyi, Marc and Robertson, Gordon and Schultz, Nikolaus and Shen, Ronglai and Sinha, Rileen and Sougnez, Carrie and Tsao, Ming-Sound and Travis, William D and Weinstein, John N and Wigle, Dennis A and Wilkerson, Matthew D and Chu, Andy and Cherniack, Andrew D and Hadjipanayis, Angela and Rosenberg, Mara and Weisenberger, Daniel J and Laird, Peter W and Radenbaugh, Amie and Ma, Singer and Stuart, Joshua M and Byers, Lauren Averett and Baylin, Stephen B and Govindan, Ramaswamy and Meyerson, Matthew and Gabriel, Stacey B and Cibulskis, Kristian and Kim, Jaegil and Stewart, Chip and Lichtenstein, Lee and Lander, Eric S and Lawrence, Michael S and Getz, E and Fulton, Robert and Fulton, Lucinda L and McLellan, Michael D and Wilson, Richard K and Ye, Kai and Fronick, Catrina C and Maher, Christopher A and Miller, Christopher A and Wendl, Michael C and Cabanski, Christopher and Mardis, Elaine and Wheeler, David and Balasundaram, Miruna and Butterfield, Yaron S. N and Carlsen, Rebecca and Chuah, Eric and Dhalla, Noreen and Guin, Ranabir and Hirst, Carrie and Lee, Darlene and Li, Haiyan I and Mayo, Michael and Moore, Richard A and Mungall, Andrew J and Schein, Jacqueline E and Sipahimalani, Payal and Tam, Angela and Varhol, Richard and Robertson, A. Gordon and Wye, Natasja and Thiessen, Nina and Holt, Robert A and Jones, Steven J.M and Marra, Marco A and Imielinski, Marcin and Onofrio, Robert C and Hodis, Eran and Zack, Travis and Helman, Elena and Pedamallu, Chandra Sekhar and Mesirov, Jill and Saksena, Gordon and Schumacher, Steven E and Carter, Scott L and Garraway, Levi and Beroukhim, Rameen and Lee, Semin and Mahadeshwar, Harshad S and ...
Nature (London), ISSN 0028-0836, 2014, Volume 511, Issue 7511, pp. 543 - 550
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7. Full Text Exosomes from human saliva as a source of microRNA biomarkers
by Michael, A and Bajracharya, SD and Yuen, PST and Zhou, H and Star, RA and Illei, GG and Alevizos, I
Oral diseases, ISSN 1354-523X, 01/2010, Volume 16, Issue 1, pp. 34 - 38
microRNA | biomarkers | salivary exosomes | Salivary exosomes | Biomarkers | MicroRNA | Life Sciences & Biomedicine | Dentistry, Oral Surgery & Medicine | Science & Technology | MicroRNAs - isolation & purification | Oligonucleotide Array Sequence Analysis | Humans | Biomarkers - analysis | MicroRNAs - metabolism | Exosomes - chemistry | Saliva - chemistry | Case-Control Studies | Sjogren's Syndrome - genetics | Polymerase chain reaction | Biological markers | Kidney diseases | Dentistry
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8. Full Text GATA3 expression in breast carcinoma: utility in triple-negative, sarcomatoid, and metastatic carcinomas
by Cimino-Mathews, Ashley, MD and Subhawong, Andrea P., MD and Illei, Peter B., MD and Sharma, Rajni, PhD and Halushka, Marc K., MD, PhD and Vang, Russell, MD and Fetting, John H., MD and Park, Ben Ho, MD, PhD and Argani, Pedram, MD
Human pathology, ISSN 0046-8177, 2013, Volume 44, Issue 7, pp. 1341 - 1349
Pathology | Breast carcinoma | Metaplastic carcinoma | GATA3 | Metastatic breast carcinoma | Life Sciences & Biomedicine | Science & Technology | Receptors, Estrogen - metabolism | Lymph Nodes - pathology | Tissue Array Analysis | Humans | Middle Aged | Receptor, ErbB-2 - metabolism | Phyllodes Tumor - metabolism | Lymphatic Metastasis | Breast Neoplasms - metabolism | Receptors, Progesterone - metabolism | Immunohistochemistry - methods | Breast Neoplasms - pathology | Biomarkers, Tumor - metabolism | Phyllodes Tumor - diagnosis | Adult | Female | Neoplasm Staging | Carcinoma, Ductal, Breast - metabolism | GATA3 Transcription Factor - metabolism | Carcinoma, Ductal, Breast - secondary | Immunohistochemistry | Carcinoma | Estrogen | Development and progression | Breast cancer | Metastasis | Progesterone | Cancer | Labeling | Patients | Tumors | Index Medicus
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