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Bioinformatics, ISSN 1367-4803, 03/2019, Volume 35, Issue 6, pp. 1049 - 1050
Abstract Summary The JCVI pan-genome pipeline is a collection of programs to run PanOCT and tools that support and extend the capabilities of PanOCT. PanOCT... 
DATABASE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Applications Notes
Journal Article
BMC Bioinformatics, ISSN 1471-2105, 06/2018, Volume 19, Issue 1, pp. 246 - 246
Bacterial pan-genomes, comprised of conserved and variable genes across multiple sequenced bacterial genomes, allow for identification of genomic regions that... 
FGR | Visualization | Pan-chromosome | Pan-genome | FGI | Viewer | PanOCT | Models | Genomic libraries | Research | Bacterial genetics | Chromosomes | Ontology | Scripts | Gene clusters | Pipelines | Genes | Variable region | Exploration | Genomes | Perl | Genetic diversity | Phylogeny | Drug resistance | Consortia | Image quality | Software packages | Researchers | Antibiotics | Computation | Phylogenetics | Bacteria | Bioinformatics | Index Medicus | fGR
Journal Article
PLoS Genetics, ISSN 1553-7390, 04/2008, Volume 4, Issue 4, pp. e1000046 - e1000046
Journal Article
Bioinformatics, ISSN 1367-4803, 04/2010, Volume 26, Issue 12, pp. 1488 - 1492
Motivation: The growth of sequence data has been accompanied by an increasing need to analyze data on distributed computer clusters. The use of these systems... 
COMPARATIVE GENOMICS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | SEQUENCE | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | FRAMEWORK | UNIFICATION | ONTOLOGY | TOOL | RESOURCE | Databases, Genetic | Workflow | Computational Biology - methods | Software | Internet | Databases, Protein | Index Medicus | Original Papers
Journal Article
Journal Article
Nucleic acids research, ISSN 1362-4962, 2003, Volume 31, Issue 9, pp. e53 - e53
RNA amplification methods have been used to facilitate making probes from small tissue samples for microarray studies. Our original amplification technique... 
Cell Line | Animals | Oligonucleotide Array Sequence Analysis - methods | Reverse Transcriptase Polymerase Chain Reaction - methods | Sensitivity and Specificity | DNA, Complementary - genetics | Mice | DNA, Complementary - metabolism | 3T3 Cells | RNA - genetics | RNA - metabolism | Index Medicus | NAR Methods Online
Journal Article
PLoS Genetics, ISSN 1553-7390, 04/2008, Volume 4, Issue 4
  We present the genome sequences of a new clinical isolate of the important human pathogen, Aspergillus fumigatus, A1163, and two closely related but rarely... 
Fungi | Composting | Mortality | Genomics | Indoor air quality
Journal Article
Nature Biotechnology, ISSN 1087-0156, 07/2002, Volume 20, Issue 7, pp. 738 - 742
  DNA microarrays have been used to study the expression of thousands of genes at the same time in a variety of cells and tissues. The methods most commonly... 
Journal Article
Ophthalmologe, ISSN 0941-293X, 2002, Volume 99, Issue 10, p. 751
Journal Article
Journal of Anesthesia, ISSN 0913-8668, 8/2002, Volume 16, Issue 3, pp. 211 - 215
Purpose. The purpose of this study was to assess the effect of local spinal cord cooling on spinal dorsal-horn neuronal activity, with special emphasis on the... 
Opioid | Spinal cord | Naloxone | Dorsal-horn neuron | Hypothermia | Pain Medicine | Emergency Medicine | Medicine & Public Health | Intensive / Critical Care Medicine | Anesthesiology
Journal Article
by Birney, Ewan and Stamatoyannopoulos, John A and Dutta, Anindya and Guigó, Roderic and Gingeras, Thomas R and Margulies, Elliott H and Weng, Zhiping and Snyder, Michael and Dermitzakis, Emmanouil T and Thurman, Robert E and Kuehn, Michael S and Taylor, Christopher M and Neph, Shane and Koch, Christoph M and Asthana, Saurabh and Malhotra, Ankit and Adzhubei, Ivan and Greenbaum, Jason A and Andrews, Robert M and Flicek, Paul and Boyle, Patrick J and Cao, Hua and Carter, Nigel P and Clelland, Gayle K and Davis, Sean and Day, Nathan and Dhami, Pawandeep and Dillon, Shane C and Dorschner, Michael O and Fiegler, Heike and Giresi, Paul G and Goldy, Jeff and Hawrylycz, Michael and Haydock, Andrew and Humbert, Richard and James, Keith D and Johnson, Brett E and Johnson, Ericka M and Frum, Tristan T and Rosenzweig, Elizabeth R and Karnani, Neerja and Lee, Kirsten and Lefebvre, Gregory C and Navas, Patrick A and Neri, Fidencio and Parker, Stephen C. J and Sabo, Peter J and Sandstrom, Richard and Shafer, Anthony and Vetrie, David and Weaver, Molly and Wilcox, Sarah and Yu, Man and Collins, Francis S and Dekker, Job and Lieb, Jason D and Tullius, Thomas D and Crawford, Gregory E and Sunyaev, Shamil and Noble, William S and Dunham, Ian and Denoeud, France and Reymond, Alexandre and Kapranov, Philipp and Rozowsky, Joel and Zheng, Deyou and Castelo, Robert and Frankish, Adam and Harrow, Jennifer and Ghosh, Srinka and Sandelin, Albin and Hofacker, Ivo L and Baertsch, Robert and Keefe, Damian and Dike, Sujit and Cheng, Jill and Hirsch, Heather A and Sekinger, Edward A and Lagarde, Julien and Abril, Josep F and Shahab, Atif and Flamm, Christoph and Fried, Claudia and Hackermüller, Jörg and Hertel, Jana and Lindemeyer, Manja and Missal, Kristin and Tanzer, Andrea and Washietl, Stefan and Korbel, Jan and Emanuelsson, Olof and Pedersen, Jakob S and Holroyd, Nancy and Taylor, Ruth and Swarbreck, David and Matthews, Nicholas and Dickson, Mark C and Thomas, Daryl J and Weirauch, Matthew T and Gilbert, James and ... and ENCODE Project Consortium and Baylor College of Medicine Human Genome Sequencing Center and Washington University Genome Sequencing Center and Children's Hospital Oakland Research Institute and NISC Comparative Sequencing Program and Broad Institute and The ENCODE Project Consortium
Nature, ISSN 0028-0836, 06/2007, Volume 447, Issue 7146, pp. 799 - 816
Journal Article