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1. Full Text Regional, institutional, and departmental factors associated with gender diversity among BS-level chemical and electrical engineering graduates
by Jarboe, Laura R and Waynant, Kristopher V
PLoS ONE, ISSN 1932-6203, 10/2019, Volume 14, Issue 10, p. e0223568
Engineering remains the least gender diverse of the science, technology, engineering and mathematics fields. Chemical engineering (ChE) and electrical... 
Gender equality | Study and teaching | Social aspects | Education | Chemical engineering | Graduate students | Electrical engineering | Finance | Women | Economic indicators | Peers | Careers | Graduates | Mathematics | Stereotypes | Males | Gender pay gap | Secondary school students | Organic chemistry | Gender equity | Historical account | Mathematical analysis | Student retention | Support services | STEM education | Engineers | Society | Females
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2. Full Text Streamlined assessment of membrane permeability and its application to membrane engineering of Escherichia coli for octanoic acid tolerance
by Santoscoy, Miguel C and Jarboe, Laura R
Journal of Industrial Microbiology & Biotechnology, ISSN 1367-5435, 6/2019, Volume 46, Issue 6, pp. 843 - 853
The economic viability of bio-production processes is often limited by damage to the microbial cell membrane and thus there is a demand for strategies to... 
Life Sciences | Biochemistry, general | Biotechnology | Genetic Engineering | Microbiology | Lag phase | Membrane engineering | Inorganic Chemistry | SYTOX | Bioinformatics | Cyclopropane fatty acids | Octanoic acid | Permeability | Saturated fatty acids | Escherichia coli | Cyclopropane compounds | Flow cytometry | Membrane permeability | Cell membranes | Mode of action | Engineering | Microorganisms | Clonal deletion | Antibiotics | Acids | E coli | Deletion | Viability | Deoxyribonucleic acid--DNA
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3. Lessons in Membrane Engineering for Octanoic Acid Production from Environmental Escherichia coli Isolates
by Yingxi Chen and Michael Reinhardt and Natalia Neris and Lucas Kerns and Thomas J Mansell and Laura R Jarboe
Applied and Environmental Microbiology, ISSN 0099-2240, 10/2018, Volume 84, Issue 19
Fermentative production of many attractive biorenewable fuels and chemicals is limited by product toxicity in the form of damage to the microbial cell... 
Viscosity | Membranes | Lipid composition | Toxicity | Lipids | Hydrophobicity | Engineering education | Cell surface | Octanoic acid | Impact analysis | Damage tolerance | Proteins | Case studies | Engineering | Design engineering | Microorganisms | Membrane fluidity | E coli | Microbiological studies | Fluidity | Bacteria | Cell membranes | Fermentation | Acid production | Chemical compounds | Fatty acids | Environmental impact | Membrane proteins | Strain | Organic chemistry | Metabolic engineering | Viability | Integrity
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4. Full Text Quantifying Attachment and Antibiotic Resistance of Escherichia coli from Conventional and Organic Swine Manure
by Zwonitzer, Martha R and Soupir, Michelle L and Jarboe, Laura R and Smith, Douglas R
Journal of Environmental Quality, ISSN 0047-2425, 03/2016, Volume 45, Issue 2, pp. 609 - 617
Broad‐spectrum antibiotics are often administered to swine, contributing to the occurrence of antibiotic‐resistant bacteria in their manure. During land... 
P-FIMBRIAE | ENVIRONMENTAL SCIENCES | INDICATOR BACTERIA | CELL PROPERTIES | URINARY-TRACT | ANTIPORT PROTEIN | SURFACE-WATER | SATURATED POROUS-MEDIA | ANTIMICROBIAL RESISTANCE | TRANSPORT BEHAVIOR | BIOFILM FORMATION
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5. Full Text YqhD: a broad-substrate range aldehyde reductase with various applications in production of biorenewable fuels and chemicals
by Jarboe, Laura R and Jarboe, Laura R
Applied Microbiology and Biotechnology, ISSN 0175-7598, 1/2011, Volume 89, Issue 2, pp. 249 - 257
The Escherichia coli NADPH-dependent aldehyde reductase YqhD has contributed to a variety of metabolic engineering projects for production of biorenewable... 
Biotechnology | Chemistry | Microbiology | Aldo–keto | Reverse engineering | Microbial Genetics and Genomics | Tolerance | Promiscuous | Glutathione | Aldo-keto | GLYCEROL | ALPHA,BETA-UNSATURATED ALDEHYDES | HIGH-TEMPERATURE | OXIDOREDUCTASE | ETHANOLOGENIC ESCHERICHIA-COLI | 1,3-PROPANEDIOL | CLOSTRIDIUM-ACETOBUTYLICUM | DEHYDROGENASE | SELECTIVE HYDROGENATION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENE-EXPRESSION | Alcohols - chemistry | Industrial Microbiology | Aldehyde Reductase - genetics | Escherichia coli - enzymology | Substrate Specificity | Escherichia coli Proteins - metabolism | Aldehydes - metabolism | Escherichia coli - chemistry | Alcohols - metabolism | Aldehyde Reductase - chemistry | Escherichia coli - genetics | Escherichia coli - metabolism | Biofuels - analysis | Escherichia coli Proteins - genetics | Aldehyde Reductase - metabolism | Escherichia coli Proteins - chemistry | Aldehydes - chemistry | Physiological aspects | Thiols | Aldehydes | Sugars | Monosaccharides | Studies | Alternative energy sources | Renewable resources | Acroleins | Bioengineering | Reductases | Scavengers | Furfural | Butyraldehyde | Biomass | Fuels | Hydrolysates | Index Medicus
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6. Full Text Improving the success and impact of the metabolic engineering design, build, test, learn cycle by addressing proteins of unknown function
by Jarboe, Laura R
Current Opinion in Biotechnology, ISSN 0958-1669, 10/2018, Volume 53, pp. 93 - 98
Rational, predictive metabolic engineering of organisms requires an ability to associate biological activity to the corresponding gene(s). Despite extensive... 
EVOLUTION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | TOLERANCE | ESCHERICHIA-COLI K-12 | GENES | BIOCHEMICAL RESEARCH METHODS | RESISTANCE | MECHANISMS | IDENTIFICATION | CELL | EXPRESSION | GENOME | Proteins | Escherichia coli | Genomics
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7. Genome Sequence of the Psychrophilic Deep-Sea Bacterium Moritella marina MP-1 (ATCC 15381)
by Kumar B Kautharapu and Laura R Jarboe
Journal of Bacteriology, ISSN 0021-9193, 11/2012, Volume 194, Issue 22, p. 6296
  Moritella marina MP-1 is a bacterial species known for its production of docosahexaenoic acid. We present the draft genome sequence of the type strain... 
Genomes | Gram-negative bacteria | Bacteriology
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8. Full Text Adaptation and tolerance of bacteria against acetic acid
by Trček, Janja and Mira, Nuno Pereira and Jarboe, Laura R
Applied Microbiology and Biotechnology, ISSN 0175-7598, 8/2015, Volume 99, Issue 15, pp. 6215 - 6229
Acetic acid is a weak organic acid exerting a toxic effect to most microorganisms at concentrations as low as 0.5 wt%. This toxic effect results mostly from... 
Life Sciences | Intracellular pH | Biotechnology | Microbiology | Acetic acid tolerance | Microbial Genetics and Genomics | Acetic acid/acetate transporters | Food preservatives | Vinegar | Acetic acid bacteria | Biomass fermentation | PHOSPHATIDYLETHANOLAMINE N-METHYLTRANSFERASE | HIGH ACETATE CONCENTRATIONS | ESCHERICHIA-COLI O157H7 | MAJOR FACILITATOR SUPERFAMILY | SACCHAROMYCES-CEREVISIAE | PLASMA-MEMBRANE TRANSPORTER | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | CHAIN FATTY-ACIDS | ACETOBACTER-ACETI | WEAK ACIDS | PQQ-DEPENDENT ADH | Adaptation, Physiological | Saccharomyces cerevisiae - physiology | Acetic Acid - toxicity | Escherichia coli - drug effects | Drug Tolerance | Saccharomyces cerevisiae - drug effects | Escherichia coli - physiology | Wine and wine making | Bacteria | Acetic acid | Analysis | Escherichia coli | Organic acids | Studies | Food preservation | Biomass | Fermentation | Index Medicus
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9. Full Text The damaging effects of short chain fatty acids on Escherichia coli membranes
by Royce, Liam A and Liu, Ping and Stebbins, Matthew J and Hanson, Benjamin C and Jarboe, Laura R
Applied Microbiology and Biotechnology, ISSN 0175-7598, 9/2013, Volume 97, Issue 18, pp. 8317 - 8327
Carboxylic acids are an attractive biorenewable chemical. However, like many other fermentatively produced compounds, they are inhibitory to the biocatalyst.... 
Life Sciences | Bacterial inhibition | Biotechnology | Membrane lipids | Membrane fluidity | Microbiology | Microbial Genetics and Genomics | Escherichia coli | Tolerance | Short chain fatty acids | BIOTECHNOLOGY | BACTERIA | LENGTH | ANTIMICROBIAL AGENTS | ORGANIC-ACIDS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GROWTH | RESISTANCE | FERMENTATION | ACETATE | STRESS | Cell Membrane - chemistry | Escherichia coli - metabolism | Hydrophobic and Hydrophilic Interactions | Cell Membrane - metabolism | Escherichia coli - growth & development | Escherichia coli - chemistry | Membrane Fluidity | Fatty Acids, Volatile - chemistry | Fatty Acids, Volatile - metabolism | Hydrogen-Ion Concentration | Fluorescence | Saturated fatty acids | Analysis | Organic acids | Studies | E coli | Cellular biology | Lipids | Fatty acids | Index Medicus | Adaptations | Applied Microbial and Cell Physiology
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10. Association of Antibiotic Resistance in Agricultural Escherichia coli Isolates with Attachment to Quartz
by Ping Liu and Michelle L Soupir and Martha Zwonitzer and Bridgette Huss and Laura R Jarboe
Applied and Environmental Microbiology, ISSN 0099-2240, 10/2011, Volume 77, Issue 19, p. 6945
  Surface water can be contaminated by bacteria from various sources, including manure from agricultural facilities. Attachment of these bacteria to soil and... 
Antibiotics | E coli | Correlation analysis | Drug resistance | Quartz
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11. Full Text Metabolic Evolution of Energy-Conserving Pathways for Succinate Production in Escherichia coli
by Xueli Zhang and Kaemwich Jantama and Jonathan C. Moore and Laura R. Jarboe and Keelnatham T. Shanmugam and Lonnie O. Ingram
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 12/2009, Volume 106, Issue 48, pp. 20180 - 20185
During metabolic evolution to improve succinate production in Escherichia coli strains, significant changes in cellular metabolism were acquired that increased... 
Enzymes | Energy metabolism | Cellular metabolism | Escherichia coli | Carboxylation | Evolution | Rumen bacteria | Fermentation | Metabolism | Genetic mutation | Succinic acid | Metabolic engineering | Biocatalyst | MANNHEIMIA-SUCCINICIPRODUCENS | biocatalyst | MULTIDISCIPLINARY SCIENCES | ENGINEERED STRAINS | OVEREXPRESSION | PHOSPHOENOLPYRUVATE CARBOXYKINASE | PYRUVATE-CARBOXYLASE | MALIC ENZYME | GLUCOSE | ACID PRODUCTION | GROWTH | succinic acid | metabolic engineering | EXPRESSION | Calcium-Binding Proteins - metabolism | Carbon Dioxide - metabolism | Mutation - genetics | Gene Expression Regulation, Enzymologic - genetics | Succinic Acid - metabolism | Adenosine Triphosphate - metabolism | Phosphoenolpyruvate Carboxykinase (ATP) - metabolism | Escherichia coli - metabolism | Escherichia coli Proteins - genetics | Industrial Microbiology - methods | Monosaccharide Transport Proteins - metabolism | Phosphoenolpyruvate Sugar Phosphotransferase System - genetics | Evolution, Molecular | Monosaccharide Transport Proteins - genetics | Periplasmic Binding Proteins - metabolism | Biological Sciences
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12. Full Text Hybrid thermochemical processing: fermentation of pyrolysis-derived bio-oil
by Jarboe, Laura R and Wen, Zhiyou and Choi, DongWon and Brown, Robert C
Applied Microbiology and Biotechnology, ISSN 0175-7598, 9/2011, Volume 91, Issue 6, pp. 1519 - 1523
Thermochemical processing of biomass by fast pyrolysis provides a nonenzymatic route for depolymerization of biomass into sugars that can be used for the... 
Levoglucosan | Biotechnology | Chemistry | Furfural | Microbiology | Ethanol | Toxicity | Microbial Genetics and Genomics | Bio-oil | Lipids | Inhibition | Acetic acid | ACID FERMENTATION | LY180 | CONVERSION | ETHANOLOGENIC ESCHERICHIA-COLI | ASSIMILATION | SACCHAROMYCES-CEREVISIAE | BIOMASS PYROLYSIS | LEVOGLUCOSAN 1,6-ANHYDRO-BETA-D-GLUCOPYRANOSE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GROWTH | FUELS | Hydrolysis | Biotechnology - methods | Bacteria - metabolism | Carbohydrates - chemistry | Biofuels - analysis | Hot Temperature | Fermentation | Fungi - metabolism | Bacteria - genetics | Biofuels - microbiology | Fungi - genetics | Pyrolysis | Mechanical engineering | Organic acids | Studies | Biodiesel fuels | Analysis | Biomass | Microorganisms | Inhibitors | Utilization | Robustness | Sugars
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13. Full Text Understanding biocatalyst inhibition by carboxylic acids
by Jarboe, Laura R and Royce, Liam A and Liu, Ping
Frontiers in Microbiology, ISSN 1664-302X, 2013, Volume 4, p. 272
Carboxylic acids are an attractive biorenewable chemical in terms of their flexibility and usage as precursors for a variety of industrial chemicals. It has... 
Intracellular pH | Acid resistance | Biocatalyst robustness | Carboxylic acid toxicity | Membrane damage | Tolerance | Transporters | SOLVENT TOLERANCE | transporters | acid resistance | MEMBRANE-PERMEABILITY | OCTANOIC-ACID | ESCHERICHIA-COLI | MICROBIOLOGY | membrane damage | intracellular pH | ORGANIC-ACIDS | SACCHAROMYCES-CEREVISIAE | PLASMA-MEMBRANE | STRESS RESPONSES | carboxylic acid toxicity | FREE FATTY-ACIDS | CHAIN MONOCARBOXYLIC ACIDS | tolerance | biocatalyst robustness | Acid Resistance
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14. Full Text Membrane engineering via trans unsaturated fatty acids production improves Escherichia coli robustness and production of biorenewables
by Tan, Zaigao and Yoon, Jong Moon and Nielsen, David R and Shanks, Jacqueline V and Jarboe, Laura R
Metabolic Engineering, ISSN 1096-7176, 05/2016, Volume 35, pp. 105 - 113
Constructing microbial biocatalysts that produce biorenewables at economically viable yields and titers is often hampered by product toxicity. For production... 
Tolerance | Membrane fluidity | Carboxylic acids production | Trans unsaturated fatty acids (TUFA) | Membrane integrity | BACTERIA | SUCCINATE PRODUCTION | PSEUDOMONAS-PUTIDA | ORGANIC-ACIDS | CIS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GROWTH | ETHANOL | MICROBIAL-PRODUCTION | LIPID-COMPOSITION | Metabolic Engineering | Fatty Acids, Unsaturated | cis-trans-Isomerases - genetics | Pseudomonas aeruginosa - genetics | Escherichia coli - genetics | Pseudomonas aeruginosa - enzymology | cis-trans-Isomerases - biosynthesis | Bacterial Proteins - genetics | Escherichia coli - metabolism | Bacterial Proteins - biosynthesis | Unsaturated fatty acids | Saturated fatty acids | Escherichia coli | Organic acids | Tufa | Index Medicus
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15. Full Text Production of biorenewable styrene: utilization of biomass-derived sugars and insights into toxicity
by Lian, Jieni and McKenna, Rebekah and Rover, Marjorie R and Nielsen, David R and Wen, Zhiyou and Jarboe, Laura R
Journal of Industrial Microbiology and Biotechnology, ISSN 1367-5435, 05/2016, Volume 43, Issue 5, pp. 595 - 604
Fermentative production of styrene from glucose has been previously demonstrated in Escherichia coli. Here, we demonstrate the production of styrene from the... 
Levoglucosan kinase | Biocatalyst inhibition | Membrane damage | Styrene | Laccase | TOLERANCE | ESCHERICHIA-COLI | KINASE | HYDROLYSIS | LEVOGLUCOSAN | PRETREATMENT | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | PYROLYTIC SUGARS | FERMENTATION | BIOCATALYST | ETHANOL | Styrene - metabolism | Escherichia coli - drug effects | Carbohydrate Metabolism | Glucose - analogs & derivatives | Lignin - chemistry | Biomass | Escherichia coli - cytology | Membrane Fluidity - drug effects | Lignin - metabolism | Escherichia coli - genetics | Escherichia coli - metabolism | Glucose - metabolism | Cell Membrane - metabolism | Styrene - pharmacology | Styrene - toxicity | Cell Membrane - drug effects | Oxidases | Pyrolysis | Petroleum chemicals industry | Escherichia coli | Glucose | Fermentation | Dextrose | Studies | Biotechnology | Cellular biology | Toxicity | Analysis | Kinases | Biocatalysts | Renewable resources | Index Medicus
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