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Oncotarget, ISSN 1949-2553, 2017, Volume 8, Issue 56, pp. 95841 - 95852
Massively parallel DNA sequencing enables the detection of thousands of germline and somatic single nucleotide variants (SNVs) in cancer samples. The... 
Splicing factor mutation | Jurkat | Phosphoproteomics | Proteogenomics | RNA-seq | phosphoproteomics | RNA | STRUCTURAL BASIS | IDENTIFICATION | BINDING | splicing factor mutation | DISCOVERY | CELL BIOLOGY
Journal Article
Organic and Biomolecular Chemistry, ISSN 1477-0520, 01/2015, Volume 13, Issue 2, pp. 374 - 378
Journal Article
PLoS genetics, ISSN 1553-7390, 11/2018, Volume 14, Issue 11, pp. e1007779 - e1007779
Journal Article
Analytical Chemistry, ISSN 0003-2700, 06/2013, Volume 85, Issue 11, p. 5475
  A new phylogenetics approach and algorithm with which to chart the evolutionary history of organisms is presented. It utilizes mass spectral data produced... 
Proteins | Algorithms | Influenza | Phylogenetics | Comparative analysis | Mass spectrometry
Journal Article
Analytical Chemistry, ISSN 0003-2700, 01/2012, Volume 84, Issue 1, p. 470
Selected reaction monitoring (SRM) is a mass spectrometry-based approach commonly used to increase analytical sensitivity and selectively for specific... 
Tissue | Metabolites | Ions | Mass spectrometry | Chromatography
Journal Article
Nature Communications, ISSN 2041-1723, 12/2017, Volume 8, Issue 1, pp. 218 - 17
Journal Article
Molecular Biology and Evolution, ISSN 0737-4038, 01/2011, Volume 28, Issue 1, p. 327
Disulfide bonds play critical roles in protein stability and function. They are generally considered to be strongly conserved among species. Although there is... 
Proteins | Eukaryotes | Hydrogen bonds | Genomics | Amino acids | Evolution | Comparative analysis
Journal Article
NATURE COMMUNICATIONS, ISSN 2041-1723, 07/2019, Volume 10, Issue 1, pp. 3319 - 15
Chromosome 17q21-ter is commonly gained in neuroblastoma, but it is unclear which gene in the region is important for tumorigenesis. The JMJD6 gene at... 
ONCOGENES | READ ALIGNMENT | INHIBITION | GENE | MULTIDISCIPLINARY SCIENCES | TRANSCRIPTION | DEPENDENCIES | EXPRESSION | CANCER | DISCOVERY | GAIN | Cell proliferation | Histone deacetylase | Therapy | Cell survival | Transcription | Therapeutic applications | c-Myc protein | Neuroblastoma | Myc protein | Enhancers | Inhibitors | Overexpression | Medical prognosis | Mice | Tumorigenesis | Chromosomes | Chromosome 17 | Tumors | Apoptosis
Journal Article
Methods in molecular biology (Clifton, N.J.), 2019, Volume 1967, p. 9
Studying the evolutionary conservation of proteins can be a valuable tool for understanding its function. At the sequence level, the conservation of each... 
Journal Article
Analytical Chemistry, ISSN 0003-2700, 06/2010, Volume 82, Issue 11, p. 4584
  Signature peptides of the neuraminidase antigen across all common circulating human subtypes of type A and B influenza are identified through the... 
Analytical chemistry | Antigens | Peptides | Swine flu | Vaccines | Gene expression | Mass spectrometry
Journal Article
by Dunham, Ian and Kundaje, Anshul and Aldred, Shelley F and Collins, Patrick J and Davis, Carrie A and Doyle, Francis and Epstein, Charles B and Frietze, Seth and Harrow, Jennifer and Kaul, Rajinder and Khatun, Jainab and Lajoie, Bryan R and Landt, Stephen G and Lee, Bum-Kyu and Pauli, Florencia and Rosenbloom, Kate R and Sabo, Peter and Safi, Alexias and Sanyal, Amartya and Shoresh, Noam and Simon, Jeremy M and Song, Lingyun and Trinklein, Nathan D and Altshuler, Robert C and Birney, Ewan and Brown, James B and Cheng, Chao and Djebali, Sarah and Dong, Xianjun and Ernst, Jason and Furey, Terrence S and Gerstein, Mark and Giardine, Belinda and Greven, Melissa and Hardison, Ross C and Harris, Robert S and Herrero, Javier and Hoffman, Michael M and Iyer, Sowmya and Kellis, Manolis and Kheradpour, Pouya and Lassmann, Timo and Li, Qunhua and Lin, Xinying and Marinov, Georgi K and Merkel, Angelika and Mortazavi, Ali and Parker, Stephen C. J and Reddy, Timothy E and Rozowsky, Joel and Schlesinger, Felix and Thurman, Robert E and Wang, Jie and Ward, Lucas D and Whitfield, Troy W and Wilder, Steven P and Wu, Weisheng and Xi, Hualin S and Yip, Kevin Y and Zhuang, Jiali and Bernstein, Bradley E and Green, Eric D and Gunter, Chris and Snyder, Michael and Pazin, Michael J and Lowdon, Rebecca F and Dillon, Laura A. L and Adams, Leslie B and Kelly, Caroline J and Zhang, Julia and Wexler, Judith R and Good, Peter J and Feingold, Elise A and Crawford, Gregory E and Dekker, Job and Elnitski, Laura and Farnham, Peggy J and Giddings, Morgan C and Gingeras, Thomas R and Guigó, Roderic and Hubbard, Timothy J and Kent, W. James and Lieb, Jason D and Margulies, Elliott H and Myers, Richard M and Stamatoyannopoulos, John A and Tenenbaum, Scott A and Weng, Zhiping and White, Kevin P and Wold, Barbara and Yu, Yanbao and Wrobel, John and Risk, Brian A and Gunawardena, Harsha P and Kuiper, Heather C and Maier, Christopher W and Xie, Ling and Chen, Xian and Mikkelsen, Tarjei S and Gillespie, Shawn and ... and ENCODE Project Consortium and The ENCODE Project Consortium
Nature, ISSN 0028-0836, 09/2012, Volume 489, Issue 7414, pp. 57 - 74
Journal Article