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1. Full Text Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
by Haas, Brian J and Delcher, Arthur L and Mount S.M, Stephen M and Wortman, Jennifer R and Smith Jr, Roger K and Hannick, Linda I and Maiti, Rama and Ronning, Catherine M and Rusch, Douglas B and Town, Christopher D and Salzberg, Steven L and White, Owen
Nucleic acids research, ISSN 0305-1048, 10/2003, Volume 31, Issue 19, pp. 5654 - 5666
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | DNA, Complementary - analysis | Alternative Splicing | Introns | Untranslated Regions | RNA, Plant - analysis | Genome, Plant | Arabidopsis - metabolism | Arabidopsis - genetics | Plant Proteins - genetics | Sequence Alignment - methods | Algorithms | RNA, Plant - chemistry | Transcription, Genetic | Software | Expressed Sequence Tags | Index Medicus
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2. Full Text Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae
by Inglis, Diane O and Binkley, Jonathan and Skrzypek, Marek S and Arnaud, Martha B and Cerqueira, Gustavo C and Shah, Prachi and Wymore, Farrell and Wortman, Jennifer R and Sherlock, Gavin
BMC microbiology, ISSN 1471-2180, 2013, Volume 13, Issue 1, pp. 91 - 91
Aspergillus | Genome annotation | Gene clusters | Sybil | Secondary metabolism | Gene Ontology | Life Sciences & Biomedicine | Microbiology | Science & Technology | Computational Biology - methods | Multigene Family | Biosynthetic Pathways - genetics | Humans | Biological Products - metabolism | Aspergillus - genetics | Genes, Fungal | Aspergillus - metabolism | Biomedical materials | Toxicology | Genetic aspects | Gene mutations | Cancer | Proteins | Enzymes | Metabolites | Metabolism | Index Medicus | Algorithms
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3. Full Text Making better use of the crowd: How crowdsourcing can advance machine learning research
by Vaughan, Jennifer Wortman
Journal of machine learning research, ISSN 1532-4435, 05/2018, Volume 18, pp. 1 - 46
Crowdsourcing | Data generation | Incentives | Behavioral experiments | Mechanical turk | Model evaluation | Hybrid intelligence | Automation & Control Systems | Computer Science, Artificial Intelligence | Technology | Computer Science | Science & Technology
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4. Full Text DAGchainer: A tool for mining segmental genome duplications and synteny
by Haas, Brian J and Delcher, Arthur L and Wortman, Jennifer R and Salzberg, Steven L
Bioinformatics (Oxford, England), ISSN 1367-4803, 12/2004, Volume 20, Issue 18, pp. 3643 - 3646
Statistics & Probability | Biochemistry & Molecular Biology | Physical Sciences | Computer Science, Interdisciplinary Applications | Life Sciences & Biomedicine | Technology | Biochemical Research Methods | Computer Science | Mathematics | Biotechnology & Applied Microbiology | Science & Technology | Mathematical & Computational Biology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | General aspects | Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) | Arabidopsis - genetics | Gene Duplication | Sequence Alignment - methods | Algorithms | Chromosome Mapping - methods | Conserved Sequence | Software | Sequence Analysis, DNA - methods | Sequence Homology, Nucleic Acid | Index Medicus
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5. Full Text The TIGR Rice Genome Annotation Resource: Improvements and new features
by Ouyang, Shu and Zhu, Wei and Hamilton, John and Lin, Haining and Campbell, Matthew and Childs, Kevin and Thibaud-Nissen, Françoise and Malek, Renae L and Lee, Yuandan and Zheng, Li and Orvis, Joshua and Haas, Brian and Wortman, Jennifer and Buell, Robin C
Nucleic acids research, ISSN 0305-1048, 01/2007, Volume 35, Issue 1, pp. D883 - D887
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | User-Computer Interface | Gene Expression | Oryza - genetics | Oryza - metabolism | Proteomics | Databases, Genetic | DNA, Complementary - chemistry | Expressed Sequence Tags - chemistry | Genome, Plant | Internet | DNA Transposable Elements | Index Medicus
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6. Full Text Comparative Genomics of the Eukaryotes
by Gerald M. Rubin and Mark D. Yandell and Jennifer R. Wortman and George L. Gabor Miklos and Catherine R. Nelson and Iswar K. Hariharan and Mark E. Fortini and Peter W. Li and Rolf Apweiler and Wolfgang Fleischmann and J. Michael Cherry and Steven Henikoff and Marian P. Skupski and Sima Misra and Michael Ashburner and Ewan Birney and Mark S. Boguski and Thomas Brody and Peter Brokstein and Susan E. Celniker and Stephen A. Chervitz and David Coates and Anibal Cravchik and Andrei Gabrielian and Richard F. Galle and William M. Gelbart and Reed A. George and Lawrence S. B. Goldstein and Fangcheng Gong and Ping Guan and Nomi L. Harris and Bruce A. Hay and Roger A. Hoskins and Jiayin Li and Zhenya Li and Richard O. Hynes and S. J. M. Jones and Peter M. Kuehl and Bruno Lemaitre and J. Troy Littleton and Deborah K. Morrison and Chris Mungall and Patrick H. O'Farrell and Oxana K. Pickeral and Chris Shue and Leslie B. Vosshall and Jiong Zhang and Qi Zhao and Xiangqun H. Zheng and Fei Zhong and Wenyan Zhong and Richard Gibbs and J. Craig Venter and Mark D. Adams and Suzanna Lewis
Science (American Association for the Advancement of Science), ISSN 0036-8075, 3/2000, Volume 287, Issue 5461, pp. 2204 - 2215
Proteins | Yeasts | Vertebrates | Receptors | Databases | Reviews | Drosophila | Genes | Genomes | Proteomes | Worms | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fungal Proteins - chemistry | Caenorhabditis elegans - chemistry | Cell Cycle - genetics | Multigene Family | Drosophila melanogaster - physiology | Saccharomyces cerevisiae - genetics | Humans | Genetic Diseases, Inborn - genetics | Helminth Proteins - chemistry | Apoptosis - genetics | Drosophila melanogaster - genetics | Caenorhabditis elegans - physiology | Neoplasms - genetics | Protein Structure, Tertiary | Cell Adhesion - genetics | Saccharomyces cerevisiae - physiology | Caenorhabditis elegans - genetics | Insect Proteins - genetics | Proteome | Helminth Proteins - genetics | Signal Transduction - genetics | Fungal Proteins - genetics | Saccharomyces cerevisiae - chemistry | Biological Evolution | Animals | Genetics, Medical | Drosophila melanogaster - chemistry | Insect Proteins - chemistry | Genes, Duplicate | Genome | Immunity - genetics | Chromosome mapping | Research | Eukaryotic cells | Comparative studies | Bacteria | Insects | Genomics | Index Medicus
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7. Full Text New resources for functional analysis of omics data for the genus Aspergillus
by Nitsche, Benjamin M and Crabtree, Jonathan and Cerqueira, Gustavo C and Meyer, Vera and Ram, Arthur F.J and Wortman, Jennifer R
BMC genomics, ISSN 1471-2164, 10/2011, Volume 12, Issue 1, pp. 486 - 486
Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Molecular Sequence Annotation | Databases, Genetic | Aspergillus - genetics | Chromosome Mapping | Aspergillus - metabolism | Genomics - methods | Cluster Analysis | Physiological aspects | Aspergillus | Usage | Databases | Research | Gene expression | Fungi | Proteins | Hypothesis testing | Polypeptides | Ontology | Genes | Colleges & universities | Genomes | Web sites | Comparative analysis | Pathogens | Data processing | Homology | Internet | Computer applications | Index Medicus
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8. Full Text A theory of learning from different domains
by Ben-David, Shai and Ben-David, Shai and Blitzer, John and Blitzer, John and Crammer, Koby and Crammer, Koby and Kulesza, Alex and Kulesza, Alex and Pereira, Fernando and Pereira, Fernando and Vaughan, Jennifer Wortman and Vaughan, Jennifer Wortman
Machine learning, ISSN 0885-6125, 5/2010, Volume 79, Issue 1, pp. 151 - 175
Control , Robotics, Mechatronics | Transfer learning | Computer Science | Artificial Intelligence (incl. Robotics) | Domain adaptation | Simulation and Modeling | Computing Methodologies | Learning theory | Language Translation and Linguistics | Sample-selection bias | Computer Science, Artificial Intelligence | Technology | Science & Technology | Computer science | Electrical engineering | Analysis | Data analysis | Models | Error analysis | Theory | Learning | Training | Classifiers | Errors | Weighting | Divergence | Empirical analysis
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9. Full Text Comparative genomics of the neglected human malaria parasite Plasmodium vivax
by Sargeant, Tobias J and Gueye, Amy H and Salzberg, Steven L and Essien, Kobby and Kooij, Taco W. A and Angiuoli, Samuel V and del Portillo, Hernando A and Gardner, Malcolm J and Nene, Vish and Korsinczky, Michael and Stoeckert, Christian J and Meyer, Esmeralda V.-S and Wortman, Jennifer R and Barnwell, John W and Yamamoto, Marcio M and Crabb, Brendan S and Ralph, Stuart A and Sullivan, Steven A and Coulson, Richard M. R and Merino, Emilio F and Bidwell, Shelby L and Adams, John H and Ren, Qinghu and Fernandez-Becerra, Carmen and Fraser-Liggett, Claire M and Kang'a, Simon and Guo, Xiang and Cheng, Qin and Crabtree, Jonathan and Hoffman, Stephen L and Silva, Joana C and Galinski, Mary R and Caler, Elisabet and Amedeo, Paolo and Paulsen, Ian and Feldblyum, Tamara V and Gilson, Paul R and White, Owen and Lorenzi, Hernan and Carlton, Jane M
Nature (London), ISSN 0028-0836, 10/2008, Volume 455, Issue 7214, pp. 757 - 763
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | General aspects | Infectious diseases | Malaria | Parasitic diseases | Protozoal diseases | Biological and medical sciences | Human protozoal diseases | Medical sciences | Conserved Sequence - genetics | Multigene Family | Species Specificity | Genomics | Humans | Plasmodium vivax - genetics | Isochores - genetics | Artemisinins - pharmacology | Chromosomes - genetics | Haplorhini - parasitology | Plasmodium vivax - pathogenicity | Synteny - genetics | Plasmodium vivax - drug effects | Malaria, Vivax - parasitology | Malaria, Vivax - metabolism | Sequence Analysis, DNA | Amino Acid Motifs | Plasmodium vivax - physiology | Animals | Cell Nucleus - genetics | Atovaquone - pharmacology | Artemisinins - metabolism | Ligands | Genome, Protozoan - genetics | Erythrocytes - parasitology | Atovaquone - metabolism | Evolution, Molecular | Plasmodium vivax | Antimalarials | Genetic aspects | Product development | Research | Health aspects | Studies | Erythrocytes | Biology | Parasitic protozoa | Drug resistance | Chromosomes | Binding sites | Index Medicus
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