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index medicus (111) 111
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phylogeny (44) 44
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nematoda (22) 22
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gene expression profiling (15) 15
haemonchus-contortus (15) 15
health aspects (15) 15
molecular characterization (15) 15
multidisciplinary sciences (15) 15
polymerase chain reaction (15) 15
polymorphism, single-stranded conformational (15) 15
biotechnology (14) 14
cattle (14) 14
genome, helminth (14) 14
genotype (14) 14
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article (13) 13
cell biology (13) 13
genetic variation (13) 13
genome (13) 13
giardiasis - parasitology (13) 13
biochemistry & molecular biology (12) 12
cryptosporidium - classification (12) 12
giardia - genetics (12) 12
identification (12) 12
sequence (12) 12
arctic medicine. tropical medicine (11) 11
australia (11) 11
cryptosporidiosis - epidemiology (11) 11
genetic transcription (11) 11
helminth proteins - genetics (11) 11
molecular epidemiology (11) 11
population genetics (11) 11
protozoan proteins - genetics (11) 11
public aspects of medicine (11) 11
real-time pcr (11) 11
ribosomal dna (11) 11
ribosomal rna (11) 11
sequence alignment (11) 11
cryptosporidium - isolation & purification (10) 10
diagnosis (10) 10
dna, protozoan - genetics (10) 10
genome, mitochondrial (10) 10
genotypes (10) 10
rna (10) 10
biology (9) 9
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dna, helminth - genetics (9) 9
genetics & heredity (9) 9
giardia duodenalis (9) 9
livestock (9) 9
microbiology (9) 9
mitochondrial genome (9) 9
nematoda - genetics (9) 9
pcr (9) 9
polymerase chain reaction - methods (9) 9
population-genetics (9) 9
species specificity (9) 9
transcriptomics (9) 9
drug resistance (8) 8
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gene expression (8) 8
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1. Full Text Genetic richness and diversity in Cryptosporidium hominis and C. parvum reveals major knowledge gaps and a need for the application of "next generation" technologies - Research review
by Jex, Aaron R and Gasser, Robin B
Biotechnology Advances, ISSN 0734-9750, 01/2010, Volume 28, Issue 1, pp. 17 - 26
Cryptosporidium species (apicomplexan protists) are a major cause of diarrhoeal disease (= cryptosporidiosis) in humans worldwide. The impact of... 
Genetic richness and diversity | Biotechnology | "Next generation" sequencing | 60-kDa glycoprotein gene (gp60) | Bioinformatics | Cryptosporidium/cryptosporidiosis | MOLECULAR CHARACTERIZATION | SUBGENOTYPE ANALYSIS | HUMAN-IMMUNODEFICIENCY-VIRUS | FRAGMENT LENGTH POLYMORPHISM | SUPPORTING ZOONOTIC TRANSMISSION | CLINICAL-MANIFESTATIONS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | SUBTYPE ANALYSIS | ELECTROPHORETIC ANALYSIS | SPORADIC CRYPTOSPORIDIOSIS | DRINKING-WATER | Biotechnology - methods | Animals | Zoonoses - parasitology | Species Specificity | Cryptosporidium - genetics | Humans | Cryptosporidiosis - economics | Cryptosporidiosis - parasitology | Developing Countries | Protozoan Proteins - genetics | Membrane Glycoproteins - genetics | Developing countries | Genetic research | Animal behavior | Fighter planes | Water quality
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2. Full Text Recent advances in the genomic and molecular biology of Giardia
by Ortega-Pierres, M.Guadalupe and Jex, Aaron R and Ansell, Brendan R.E and Svärd, Staffan G and Teknisk-naturvetenskapliga vetenskapsområdet and Biologiska sektionen and Uppsala universitet and Institutionen för cell- och molekylärbiologi and Mikrobiologi
Acta Tropica, ISSN 0001-706X, 08/2018, Volume 184, pp. 67 - 72
is the most common gastrointestinal protozoan parasite of humans and a significant contributor to the global burden of both diarrheal disease and... 
Genomics | Antigenic variation | Gene manipulation | Giardia duodenalis | DNA repair | Regulation of encystation | Transcriptional responses | EPIGENETIC MECHANISMS | OXIDATIVE STRESS | PRIMITIVE EUKARYOTE | DNA-DAMAGE | DOUBLE-STRAND BREAK | TROPICAL MEDICINE | SITE-SPECIFIC RECOMBINATION | CELL-CYCLE | LAMBLIA | PARASITOLOGY | TRANSCRIPTIONAL RESPONSE | Antiparasitic Agents - therapeutic use | Drug Resistance - genetics | Animals | Antigenic Variation | Giardia - drug effects | Molecular Biology | Giardia - genetics | Humans | Giardiasis - drug therapy | Giardiasis - parasitology | Diarrhea | Epigenetic inheritance | Genetic engineering | Genetic transcription | Molecular biology | Analysis | Medical and Health Sciences | Medicin och hälsovetenskap | Infektionsmedicin | Klinisk medicin | Clinical Medicine | Infectious Medicine
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3. Full Text A communal catalogue reveals Earth's multiscale microbial diversity
by Thompson, Luke R and Sanders, Jon G and McDonald, Daniel and Amir, Amnon and Ladau, Joshua and Locey, Kenneth J and Prill, Robert J and Tripathi, Anupriya and Gibbons, Sean M and Ackermann, Gail and Navas-Molina, Jose A and Janssen, Stefan and Kopylova, Evguenia and Vazquez-Baeza, Yoshiki and Gonzalez, Antonio and Morton, James T and Mirarab, Siavash and Xu, Zhenjiang Zech and Jiang, Lingjing and Haroon, Mohamed F and Kanbar, Jad and Zhu, Qiyun and Song, Se Jin and Kosciolek, Tomasz and Bokulich, Nicholas A and Lefler, Joshua and Brislawn, Colin J and Humphrey, Gregory and Owens, Sarah M and Hampton-Marcell, Jarrad and Berg-Lyons, Donna and McKenzie, Valerie and Fierer, Noah and Fuhrman, Jed A and Clauset, Aaron and Stevens, Rick L and Shade, Ashley and Pollard, Katherine S and Goodwin, Kelly D and Jansson, Janet K and Gilbert, Jack A and Knight, Rob and Ibanez-Alamo, Juan Diego and Jurburg, Stephanie D and Earth Microbiome Project Consortiu and Earth Microbiome Project Consortium and Naturvetenskapliga fakulteten and Faculty of Sciences and Göteborgs universitet and Gothenburg University and Institutionen för marina vetenskaper and Department of marine sciences
Nature, ISSN 0028-0836, 11/2017, Volume 551, Issue 7681, pp. 457 - +
Our growing awareness of the microbial world's importance and diversity contrasts starkly with our limited understanding of its fundamental structure. Despite... 
CONSISTENT | ARCHAEAL | EVOLUTION | MARINE BACTERIAL | GLOBAL PATTERNS | BACTERIAL DIVERSITY | OPERON COPY NUMBER | ONTOLOGY | COMMUNITIES | NESTEDNESS | MULTIDISCIPLINARY SCIENCES | Humans | RNA, Ribosomal, 16S - analysis | Geographic Mapping | Plants - microbiology | Gene Dosage | Archaea - isolation & purification | Biodiversity | Bacteria - genetics | Bacteria - isolation & purification | Ecology - methods | Animals | Microbiota - genetics | RNA, Ribosomal, 16S - genetics | Archaea - genetics | Earth (Planet) | Environmental aspects | Observations | Microbial colonies | Biological diversity | Analytical methods | Nucleotide sequence | Microbiology | Taxonomy | rRNA | Ecology | Genomes | Gene sequencing | Meta-analysis | Earth | Studies | Microorganisms | Ribonucleic acids | Phylogenetics | Bacteria | Deoxyribonucleic acid--DNA | DNA sequencing | Geosciences, Multidisciplinary | Climate Research | Klimatforskning | Oceanografi, hydrologi, vattenresurser | Oceanography, Hydrology, Water Resources | Annan geovetenskap och miljövetenskap | Multidisciplinär geovetenskap | Ekologi | Other Earth and Related Environmental Sciences | CVI Infection Biology | CVI Infectiebiologie | Food Quality and Design | VLAG | Infectiebiologie | Infection Biology
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4. Full Text Impact of gastrointestinal parasitic nematodes of sheep, and the role of advanced molecular tools for exploring epidemiology and drug resistance - An Australian perspective
by Roeber, Florian and Jex, Aaron R and Gasser, Robin B
Parasites and Vectors, ISSN 1756-3305, 2013, Volume 6, Issue 1, pp. 153 - 153
Parasitic nematodes (roundworms) of small ruminants and other livestock have major economic impacts worldwide. Despite the impact of the diseases caused by... 
Gastrointestinal nematodes | Molecular methods | Strongylida | Australia | Drug resistance | Epidemiology | Small ruminants (including sheep and goats) | WINTER RAINFALL REGION | BENZIMIDAZOLE-RESISTANCE | FREE-LIVING STAGES | TROPICAL MEDICINE | SMALL RUMINANT PARASITES | HAEMONCHUS-CONTORTUS | GASTRO INTESTINAL NEMATODES | TRICHOSTRONGYLUS-COLUBRIFORMIS | TELADORSAGIA-CIRCUMCINCTA | PARASITOLOGY | ANTHELMINTIC RESISTANCE | PASTURE CONTAMINATION | Molecular Diagnostic Techniques - methods | Sheep Diseases - parasitology | Sheep Diseases - diagnosis | Australia - epidemiology | Nematoda - drug effects | Helminthiasis, Animal - epidemiology | Helminthiasis, Animal - diagnosis | Nematoda - genetics | Animals | Helminthiasis, Animal - parasitology | Intestinal Diseases, Parasitic - epidemiology | Nematode Infections - epidemiology | Nematode Infections - veterinary | Sheep | Intestinal Diseases, Parasitic - veterinary | Veterinary Medicine - methods | Sheep Diseases - epidemiology | Intestinal Diseases, Parasitic - diagnosis | Nematode Infections - diagnosis | Drug Resistance | Roundworm infections | Parasitic diseases | Colleges & universities | Livestock | Parasites | Eggs
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5. Full Text Analysis of the genetic diversity within Cryptosporidium hominis and Cryptosporidium parvum from imported and autochtonous cases of human cryptosporidiosis by mutation scanning
by Jex, Aaron R and Gasser, Robin B
ELECTROPHORESIS, ISSN 0173-0835, 11/2008, Volume 29, Issue 20, pp. 4119 - 4129
The present study investigated sequence variation in part of the 60 kilodalton glycoprotein (pgp60) gene among Cryptosporidium hominis and Cryptosporidium... 
Cryptosporidium | Single‐strand conformation polymorphism (SSCP) analysis | Epidemiology | Population genetics | 60 kilodalton glycoprotein (gp60) gene | Single-strand conformation polymorphism (SSCP) analysis | SEQUENCE-ANALYSIS | CHEMISTRY, ANALYTICAL | BIOCHEMICAL RESEARCH METHODS | SUBGENOTYPE ANALYSIS | FRAGMENT LENGTH POLYMORPHISM | WATERBORNE OUTBREAK | AIDS PATIENT | PULMONARY CRYPTOSPORIDIOSIS | ELECTROPHORETIC ANALYSIS | MOLECULAR EPIDEMIOLOGY | INFECTION | SUBTYPE ANALYSES | Cryptosporidiosis - genetics | Cryptosporidium parvum - isolation & purification | Humans | Cryptosporidium parvum - genetics | Phylogeny | Sequence Analysis, DNA | Membrane Glycoproteins - genetics | Genetic Variation | Polymorphism, Single-Stranded Conformational | Animals | Base Sequence | Cryptosporidiosis - epidemiology | Cryptosporidium - genetics | Mutation | Cryptosporidium - isolation & purification
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6. Full Text Whole-genome sequence of Schistosoma haematobium
by Young, Neil D and Jex, Aaron R and Li, Bo and Liu, Shiping and Yang, Linfeng and Xiong, Zijun and Li, Yingrui and Cantacessi, Cinzia and Hall, Ross S and Xu, Xun and Chen, Fangyuan and Wu, Xuan and Zerlotini, Adhemar and Oliveira, Guilherme and Hofmann, Andreas and Zhang, Guojie and Fang, Xiaodong and Kang, Yi and Campbell, Bronwyn E and Loukas, Alex and Ranganathan, Shoba and Rollinson, David and Rinaldi, Gabriel and Brindley, Paul J and Yang, Huanming and Wang, Jun and Wang, Jian and Gasser, Robin B
Nature Genetics, ISSN 1061-4036, 02/2012, Volume 44, Issue 2, pp. 221 - 225
Schistosomiasis is a neglected tropical disease caused by blood flukes (genus Schistosoma; schistosomes) and affecting 200 million people worldwide(1). No... 
GENETIC MANIPULATION | IMMUNITY | PATHOGEN | HUMAN BLOOD FLUKE | GENETICS & HEREDITY | JAPONICUM | TARGETS | HEALTH | MANSONI | Genome, Helminth | Schistosoma haematobium - genetics | Animals | Base Sequence | Molecular Sequence Annotation | Female | Male | Chromosome Mapping | Sequence Analysis, DNA | Reports | Genetic aspects | Schistosoma | Nucleotide sequencing | DNA sequencing | Proteins | Signal transduction | Biomedical research | Ontology | Genomics | Bladder | Genomes | Genetic engineering | Life sciences | Vaccines | Tropical diseases
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7. Full Text Ascaris suum draft genome
by Jex, Aaron R and Liu, Shiping and Li, Bo and Young, Neil D and Hall, Ross S and Li, Yingrui and Yang, Linfeng and Zeng, Na and Xu, Xun and Xiong, Zijun and Chen, Fangyuan and Wu, Xuan and Zhang, Guojie and Fang, Xiaodong and Kang, Yi and Anderson, Garry A and Harris, Todd W and Campbell, Bronwyn E and Vlaminck, Johnny and Wang, Tao and Cantacessi, Cinzia and Schwarz, Erich M and Ranganathan, Shoba and Geldhof, Peter and Nejsum, Peter and Sternberg, Paul W and Yang, Huanming and Wang, Jun and Wang, Jian and Gasser, Robin B
Nature, ISSN 0028-0836, 11/2011, Volume 479, Issue 7374, pp. 529 - 533
Parasitic diseases have a devastating, long-term impact on human health, welfare and food production worldwide. More than two billion people are infected with... 
SWISS-PROT | GENE | DATABASE | RNA-SEQ | SCHISTOSOMA-MANSONI | NEMATODES | MULTIDISCIPLINARY SCIENCES | PARASITIC DISEASES | BRUGIA-MALAYI | TOOL | PREDICTION | Ascaris suum - drug effects | Ascaris suum - genetics | Animals | Genomics | Molecular Sequence Annotation | Ascariasis - drug therapy | Drug Design | Genes, Helminth - genetics | Ascariasis - parasitology | Genome, Helminth - genetics | Molecular Targeted Therapy | Antinematodal Agents | Genetic aspects | Genomes | Parasitic diseases | Health aspects | Ascaris | Proteins | Nematodes | Genetics | Genes
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8. Full Text First report of anatoxin-a producing cyanobacteria in Australia illustrates need to regularly up-date monitoring strategies in a shifting global distribution
by John, N and Baker, L and Ansell, BRE and Newham, S and Crosbie, ND and Jex, AR
SCIENTIFIC REPORTS, ISSN 2045-2322, 07/2019, Volume 9, Issue 1, pp. 10894 - 9
Routine monitoring of toxic cyanobacteria depends on up-to-date epidemiological information about their distribution. In Australia, anatoxin producing... 
CYLINDROSPERMOPSIS-RACIBORSKII | ALIEN | APHANIZOMENON-ISSATSCHENKOI | BIOSYNTHESIS | BLOOM | MULTIDISCIPLINARY SCIENCES | TOXINS | HOMOANATOXIN-A | IDENTIFICATION | CHROMATOGRAPHY | FRESH-WATER | Surface water | Cyanobacteria | Sampling | Water temperature | Epidemiology | Enzyme-linked immunosorbent assay | Eutrophication | Index Medicus
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9. Full Text Asynchronous generation of oil droplets using a microfluidic flow focusing system
by Thurgood, P and Baratchi, S and Arash, A and Pirogova, E and Jex, AR and Khoshmanesh, K
SCIENTIFIC REPORTS, ISSN 2045-2322, 07/2019, Volume 9, Issue 1, pp. 10600 - 11
Here, we show that long-term exposure of PDMS based microfluidic droplet generation systems to water can reverse their characteristics such that they generate... 
PRESSURE | EMULSION | MULTIDISCIPLINARY SCIENCES | POLY(DIMETHYLSILOXANE) | ENCAPSULATION | SIZE | SURFACE MODIFICATION | FABRICATION | PDMS | Latex | Repair & maintenance | Oil
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10. Comparative evaluation of two DNA isolation techniques for PCR-based diagnosis of gastrointestinal nematode infections in sheep
by Roeber, Florian and Jex, Aaron R and Gasser, Robin B
Molecular and Cellular Probes, ISSN 0890-8508, 08/2013, Volume 27, Issue 3-4, pp. 153 - 157
The specific diagnosis of gastrointestinal parasite infections in livestock is central to their control. PCR assays have been developed for routine diagnosis... 
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11. Full Text Time-course study of the transcriptome of peripheral blood mononuclear cells (PBMCs) from sheep infected with Fasciola hepatica
by Alvarez Rojas, Cristian A and Scheerlinck, Jean-Pierre and Ansell, Brendan R. E and Hall, Ross S and Gasser, Robin B and Jex, Aaron R
PLoS ONE, ISSN 1932-6203, 07/2016, Volume 11, Issue 7, p. e0159194
Fasciola hepatica is a parasitic trematode that infects a wide range of mammalian hosts, including livestock and humans, in temperate and tropical regions... 
B-CELLS | IMMUNE-RESPONSE | IN-VITRO | TGF-BETA | PROTEIN | SECRETORY PRODUCTS | IFN-GAMMA | MULTIDISCIPLINARY SCIENCES | EXPRESSION | ALTERNATIVE ACTIVATION | T-CELLS | Fascioliasis - veterinary | Leukocytes, Mononuclear - metabolism | Sheep - parasitology | Up-Regulation - genetics | Gene Expression Profiling | Transcriptome - genetics | Fascioliasis - genetics | Down-Regulation - genetics | Animals | Time Factors | Fasciola hepatica - physiology | Female | Transcription, Genetic | Sheep - genetics | Gene Ontology | Care and treatment | Livestock | Research | T cells | Analysis | Fluke infections | Pathogenesis | Liver | Genes | Leukocytes (mononuclear) | Infections | Lymphocytes T | Parasites | Tissues | Blood | Cell activation | Immunology | Parasitic diseases | Tropical environment | Peripheral blood mononuclear cells | Immune system | Parasitology | Immune response | Cytokines | Ducts | Neutrophils | Gene expression | Bile duct | Tropical environments | Sheep | Ligands | Diagnostic systems | Chemokines | Cell migration | Bile
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12. Full Text Drug resistance in Giardia duodenalis
by Ansell, Brendan R.E and McConville, Malcolm J and Ma'ayeh, Showgy Y and Dagley, Michael J and Gasser, Robin B and Svärd, Staffan G and Jex, Aaron R and Teknisk-naturvetenskapliga vetenskapsområdet and Biologiska sektionen and Uppsala universitet and Institutionen för cell- och molekylärbiologi and Mikrobiologi
Biotechnology Advances, ISSN 0734-9750, 11/2015, Volume 33, Issue 6, pp. 888 - 901
is a microaerophilic parasite of the human gastrointestinal tract and a major contributor to diarrheal and post-infectious chronic gastrointestinal disease... 
Furazolidone | Nitazoxanide | Sir2 NAD-dependent histone deacetylase | Nitroheterocyclic | Treatment failure | Giardia | Metronidazole | NAD(P)H oxidoreductase | Drug resistance | NITROIMIDAZOLE DRUGS | OXIDATIVE STRESS | PROTEIN DISULFIDE-ISOMERASE | AMITOCHONDRIATE PROTIST | PYRUVATE-FERREDOXIN OXIDOREDUCTASE | ENTAMOEBA-HISTOLYTICA | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | THIOREDOXIN REDUCTASE | METRONIDAZOLE RESISTANCE | HELICOBACTER-PYLORI | IN-VITRO ACTIVITY | Giardia lamblia | Humans | Treatment Failure | Giardiasis - drug therapy | Azoles - therapeutic use | Giardiasis - parasitology | Antiprotozoal Agents - therapeutic use | Azoles - pharmacology | Antiprotozoal Agents - pharmacology | Drug Resistance | Epigenetic inheritance | Enzymes | Antioxidants | Drugs | In vitro testing | Damage | Patients | Bioinformatics | Medical and Health Sciences | Medicin och hälsovetenskap | Medicinsk bioteknologi | Medical Biotechnology
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