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1. Full Text Causal relationships among the gut microbiome, short-chain fatty acids and metabolic diseases
by Sanna, S and Zuydam, N.R. van and Mahajan, A and Kurilshikov, A and Vila, A and Vosa, U and Mujagic, Z and Masclee, A.A and Jonkers, D and Oosting, M and Joosten, L.A.B and Netea, M.G and Franke, L and Zhernakova, A and Fu, J and Wijmenga, C and McCarthy, M.I
Nature genetics, ISSN 1061-4036, 2019, Volume 51, Issue 4, pp. 600 - 605
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Diabetes Mellitus, Type 2 - genetics | Humans | Middle Aged | Glucose Tolerance Test - methods | Fatty Acids, Volatile - genetics | Genotype | Male | Gastrointestinal Microbiome - genetics | Young Adult | Netherlands | Adolescent | Aged, 80 and over | Metabolic Diseases - genetics | Adult | Female | Aged | Metabolic diseases | Research | Microbiota (Symbiotic organisms) | Fatty acids | Type 2 diabetes | Obesity | Esters | Genomics | Analysis | Disease | Anthropometry | Microbiomes | Chains | Population studies | Genomes | Consortia | Microbiota | Feces | Intestinal microflora | Diabetes mellitus (non-insulin dependent) | Nucleotide sequence | Abnormalities | Propionic acid | Diabetes mellitus | Principal components analysis | Metabolism | Insulin | Statistics | Studies | Glucose tolerance | Genotyping | Diabetes | Production capacity | Metabolic disorders | Index Medicus
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2. Full Text Impact of commonly used drugs on the composition and metabolic function of the gut microbiota
by Vich Vila, Arnau and Collij, Valerie and Sanna, Serena and Sinha, Trishla and Imhann, Floris and Bourgonje, Arno R and Mujagic, Zlatan and Jonkers, Daisy M A E and Masclee, Ad A M and Fu, Jingyuan and Kurilshikov, Alexander and Wijmenga, Cisca and Zhernakova, Alexana and Weersma, Rinse K
Nature communications, ISSN 2041-1723, 01/2020, Volume 11, Issue 1, pp. 362 - 362
RESISTANCE | PROTON PUMP INHIBITORS | IDENTIFICATION | ARTHRITIS | IRRITABLE-BOWEL-SYNDROME | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Metagenomics | Proton Pump Inhibitors - pharmacology | Humans | Middle Aged | Bacteria - drug effects | Male | Gastrointestinal Microbiome - physiology | Case-Control Studies | Feces - microbiology | Ecosystem | Bacteria - classification | Adult | Female | Antidepressive Agents - pharmacology | Laxatives - pharmacology | Body Mass Index | Bacteria - metabolism | Metformin - pharmacology | Computational Biology | Irritable Bowel Syndrome - drug therapy | Irritable Bowel Syndrome - microbiology | Microbial Interactions - drug effects | Gastrointestinal Microbiome - drug effects | Anti-Bacterial Agents - pharmacology | Cohort Studies | Drug abuse | Gastrointestinal tract diseases | Taxonomy | Digestive system | Microbiomes | Metabolism | Chemical compounds | Organic chemistry | Microorganisms | Microbiota | Antibiotics | Laxatives | Metformin | Intestinal microflora | Digestive tract | Drug use | Index Medicus
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3. Full Text Gut microbiota composition and functional changes in inflammatory bowel disease and irritable bowel syndrome
by Vich Vila, Arnau and Imhann, Floris and Collij, Valerie and Jankipersadsing, Soesma A and Gurry, Thomas and Mujagic, Zlatan and Kurilshikov, Alexander and Bonder, Marc Jan and Jiang, Xiaofang and Tigchelaar, Ettje F and Dekens, Jackie and Peters, Vera and Voskuil, Michiel D and Visschedijk, Marijn C and van Dullemen, Henik M and Keszthelyi, Daniel and Swertz, Morris A and Franke, Lude and Alberts, Rudi and Festen, Eleonora A M and Dijkstra, Gerard and Masclee, Ad A M and Hofker, Marten H and Xavier, Ramnik J and Alm, Eric J and Fu, Jingyuan and Wijmenga, Cisca and Jonkers, Daisy M A E and Zhernakova, Alexana and Weersma, Rinse K
Science translational medicine, ISSN 1946-6234, 12/2018, Volume 10, Issue 472, p. eaap8914
MARKERS | RESISTANCE | IRON | INTESTINE | ALIGNMENT | IDENTIFICATION | Life Sciences & Biomedicine | Medicine, Research & Experimental | Science & Technology | Cell Biology | Research & Experimental Medicine | Inflammatory bowel diseases | Microbiota | Growth rate | Gastrointestinal tract diseases | Intestine | Digestive system | Antibiotic resistance | Irritable bowel syndrome | Microbiomes | Intestinal microflora | Digestive tract | Index Medicus
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4. Full Text Microbial perturbations and modulation in conditions associated with malnutrition and malabsorption
by Jonkers, Daisy M.A.E., PhD
Baillière's best practice & research. Clinical gastroenterology, ISSN 1521-6918, 2016, Volume 30, Issue 2, pp. 161 - 172
Gastroenterology and Hepatology | Probiotics | Metabolic activity | Diet | Malabsorption | Malnutrition | Microbiome | Prebiotics | Gastroenterology & Hepatology | Life Sciences & Biomedicine | Science & Technology | Intestinal Mucosa - physiology | Immune System - physiology | Humans | Malabsorption Syndromes - physiopathology | Nutritional Physiological Phenomena | Gastrointestinal Microbiome - physiology | Malnutrition - physiopathology | Metabolites | Microbiota (Symbiotic organisms) | Analysis | Gastrointestinal system | Physiological aspects | Fermentation | Fatty acids | Index Medicus
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5. Full Text Intestinal barrier function is maintained with aging - a comprehensive study in healthy subjects and irritable bowel syndrome patients
by Wilms, Ellen and Troost, Freddy J and Elizalde, Montserrat and Winkens, Bjorn and de Vos, Paul and Mujagic, Zlatan and Jonkers, Daisy M A E and Masclee, Ad A M
Scientific reports, ISSN 2045-2322, 01/2020, Volume 10, Issue 1, pp. 475 - 475
PERMEABILITY | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Young adults | Transcription | Intestine | Digestive system | Irritable bowel syndrome | Aging | Diarrhea | Permeability | Colon | Digestive tract | Geriatrics | Index Medicus
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6. Full Text Modulation of Intestinal Epithelial Permeability by Plasma from Patients with Crohn's Disease in a Three-dimensional Cell Culture Model
by Xu, Pan and Elamin, Elhaseen and Elizalde, Montserrat and Bours, Paul P. H. A and Pierik, Marieke J and Masclee, Ad A. M and Jonkers, Daisy M. A. E
Scientific reports, ISSN 2045-2322, 02/2019, Volume 9, Issue 1, pp. 1 - 11
ANTIBODIES | TUMOR-NECROSIS-FACTOR | TNF-ALPHA MODULATION | INFLAMMATORY-BOWEL-DISEASE | COLITIS | JUNCTIONS | BARRIER FUNCTION | P38 MAPK | EXPRESSION | MONOLAYERS | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Cell culture | Phosphorylation | MAP kinase | mRNA | Permeability | Tumor necrosis factor-α | Gene expression | Zonula occludens-1 protein | Cysts | Intestine | Monoclonal antibodies | Tumor necrosis factor-TNF | Tumors | Index Medicus
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7. Full Text Impact of early events and lifestyle on the gut microbiota and metabolic phenotypes in young school-age children
by Zhong, Huanzi and Penders, John and Shi, Zhun and Ren, Huahui and Cai, Kaiye and Fang, Chao and Ding, Qiuxia and Thijs, Carel and Blaak, Ellen E and Stehouwer, Coen D. A and Xu, Xun and Yang, Huanming and Wang, Jian and Wang, Jun and Jonkers, Daisy M. A. E and Masclee, Ad A. M and Brix, Susanne and Li, Junhua and Arts, Ilja C. W and Kristiansen, Karsten
Microbiome, ISSN 2049-2618, 01/2019, Volume 7, Issue 1, pp. 2 - 2
Gut microbiota | MUTANS | INTESTINAL MICROBIOTA | SERUM METABOLOME | COLONIZATION | Metabolic phenotypes | School-age children | OBESITY | DIET | CHAIN FATTY-ACIDS | WEIGHT | Enterotype | BIFIDOBACTERIUM | Life Sciences & Biomedicine | Microbiology | Science & Technology | Life Style | Prospective Studies | Child Nutritional Physiological Phenomena | Humans | Dietary Fiber - administration & dosage | Metagenomics - methods | Gastrointestinal Tract - microbiology | Male | Breast Feeding - statistics & numerical data | Phylogeny | Insulin - blood | Bacteria - genetics | Feces - microbiology | Phenotype | Bacteria - classification | Fatty Acids, Nonesterified - blood | Child | Microbiota (Symbiotic organisms) | Antibiotics | Food habits | Genetic aspects | Infants | Breast feeding | Fatty acids | Biological diversity | Health care | Obesity | Phenotypes | Breastfeeding & lactation | Microbiomes | Homeostasis | Metabolism | Fermentation | Insulin | Vegetarianism | Studies | Nutrition research | Microbiota | Diet | Metabolites | Lifestyles | Children | Intestinal microflora | Dietary fiber | Age | Index Medicus
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8. Full Text Improvements in the Long-Term Outcome of Crohn's Disease Over the Past Two Decades and the Relation to Changes in Medical Management: Results from the Population-Based IBDSL Cohort
by Jeuring, Steven F. G and van den Heuvel, Tim R. A and Liu, Limmie Y. L and Zeegers, Maurice P and Hameeteman, Wim H and Romberg-Camps, Marielle J. L and Oostenbrug, Liekele E and Masclee, Ad A. M and Jonkers, Daisy M. A. E and Pierik, Marieke J
The American journal of gastroenterology, ISSN 0002-9270, 02/2017, Volume 112, Issue 2, pp. 325 - 336
IMMORTAL-TIME BIAS | SURGERY | RECURRENCE RATES | INFLAMMATORY-BOWEL-DISEASE | THERAPY | INCEPTION COHORT | PHENOTYPE | FOLLOW-UP | NATURAL-HISTORY | CLINICAL-COURSE | Gastroenterology & Hepatology | Life Sciences & Biomedicine | Science & Technology | Multivariate Analysis | Azathioprine - therapeutic use | Glucocorticoids - therapeutic use | Humans | Middle Aged | Male | Methotrexate - therapeutic use | Infliximab - therapeutic use | Digestive System Surgical Procedures - trends | Young Adult | Netherlands | Mercaptopurine - therapeutic use | Adult | Female | Antirheumatic Agents - therapeutic use | Biological Products - therapeutic use | Severity of Illness Index | Kaplan-Meier Estimate | Proportional Hazards Models | Crohn Disease - therapy | Propensity Score | Adalimumab - therapeutic use | Hospitalization - trends | Prednisone - therapeutic use | Immunologic Factors - therapeutic use | Index Medicus
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9. Full Text A profile of volatile organic compounds in exhaled air as a potential non-invasive biomarker for liver cirrhosis
by Pijls, K.E and Smolinska, A and Jonkers, Daisy and Dallinga, Jan and Masclee, Ad A and Koek, Ger and van Schooten, Frederik Jan
Scientific reports, ISSN 2045-2322, 01/2016, Volume 6, Issue 1, pp. 19903 - 19903
FIBROSIS | DIAGNOSIS | METABOLOMICS | MARKER | SAMPLING VARIABILITY | DISEASE | BIOPSY | BREATH TESTS | HEPATITIS-C | SPECTROMETRY | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Liver Cirrhosis - etiology | Liver Cirrhosis - diagnosis | Humans | Middle Aged | Male | Liver Cirrhosis - blood | Case-Control Studies | Young Adult | Liver Diseases - etiology | Adolescent | Liver Cirrhosis - metabolism | Biomarkers | Adult | Female | Liver Diseases - diagnosis | ROC Curve | Volatile Organic Compounds | Aged | Exhalation | Liver Diseases - metabolism | Cirrhosis | Gas chromatography | Liver diseases | Biopsy | Breath tests | Mass spectroscopy | Volatile organic compounds--VOCs | Volatiles | Liver cirrhosis | Morbidity | Organic compounds | Index Medicus
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