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Bioinformatics, ISSN 1367-4803, 10/2019, Volume 35, Issue 19, pp. 3870 - 3872
Abstract Summary We developed the metagenomeFeatures R Bioconductor package along with annotation packages for three 16S rRNA databases (Greengenes, RDP and... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 9/2017, Volume 114, Issue 37, pp. E7841 - E7850
Characterizing the collective regulatory impact of genetic variants on complex phenotypes is a major challenge in developing a genotype to phenotype map. Using... 
GTEx | Expression quantitative trait locus | GWAS | Bipartite networks | eQTL | expression quantitative trait locus | TRANS-EQTLS | MULTIDISCIPLINARY SCIENCES | GENE-EXPRESSION | bipartite networks | Biological Sciences | PNAS Plus
Journal Article
Nature Methods, ISSN 1548-7091, 2014, Volume 11, Issue 4, pp. 359 - 360
Journal Article
ISSN 1472-9792, 03/2018, Volume 109, p. 102
The lung microbiota has received less attention compared to other body sites, in part because its study carries special technological difficulties related to... 
Lung diseases | Actinomyces | Data processing | Patients | Meta-analysis | Respiratory tract | Microbiota | Tuberculosis | Lungs | Sputum | Bioinformatics | Species | Anchoring | Niches
Journal Article
PLoS Neglected Tropical Diseases, ISSN 1935-2727, 06/2017, Volume 11, Issue 6, p. e0005671
Journal Article
PLoS ONE, ISSN 1932-6203, 06/2015, Volume 10, Issue 6, p. e0100476
In this study we investigated the methylome of chickens immunized with Infectious laryngotracheitis (ILT) vaccine derived from chicken embryos. Methyl-CpG... 
CHIP-SEQ | VIRUS-VACCINE | IN-VITRO | BIOCONDUCTOR PACKAGE | HUMAN GENOME | DNA METHYLATION | INITIATION | PROMOTERS | MULTIDISCIPLINARY SCIENCES | GENE-EXPRESSION | CANCER | DNA Methylation - immunology | Immune System Diseases - genetics | Genome - genetics | Herpesvirus 1, Gallid - immunology | Transcription Initiation Site - physiology | Signal Transduction - immunology | TOR Serine-Threonine Kinases - genetics | Chickens - genetics | Gene Regulatory Networks - immunology | RNA Processing, Post-Transcriptional - immunology | Gene Regulatory Networks - genetics | Immune System Diseases - immunology | Ribosomal Protein S6 Kinases, 70-kDa - genetics | Vaccines - immunology | DNA Methylation - genetics | Inflammation - immunology | Signal Transduction - genetics | Chickens - immunology | Ribosomal Protein S6 Kinases, 70-kDa - immunology | TOR Serine-Threonine Kinases - immunology | Animals | RNA Processing, Post-Transcriptional - genetics | Eukaryotic Initiation Factor-2 - genetics | Genome - immunology | CpG Islands - genetics | Inflammation - genetics | Eukaryotic Initiation Factor-2 - immunology | TOR protein | Post-transcription | Veterinary colleges | Disease | Laboratories | Poultry | Genes | Genomes | Infections | DNA vaccines | Vaccines | Kinases | Veterinary medicine | Gene sequencing | Immunology | Etiology | DNA methylation | Bioinformatics | Deoxyribonucleic acid--DNA | CpG islands | Immune system | RNA modification | Immunization | Immune response | Birds | Laryngotracheitis | Gene expression | Ribonucleic acid--RNA | Embryos | Immune response (humoral) | Signaling | Infectious diseases | Chickens | Epigenetics | Axon guidance | Methylation | Cancer | RNA | Deoxyribonucleic acid | Ribonucleic acid | DNA
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 09/2017, Volume 114, Issue 37, p. E7841
Characterizing the collective regulatory impact of genetic variants on complex phenotypes is a major challenge in developing a genotype to phenotype map. Using... 
Studies | Quantitative trait loci | Coalescing | Genotype & phenotype | Tissue | Networks | Chromatin | Communities | Gene expression | Tissues | Biological activity | Structure-function relationships
Journal Article
Blood, ISSN 0006-4971, 11/2019, Volume 134, Issue Supplement_1, pp. 2788 - 2788
Introduction: Diffuse large B-cell lymphoma (DLBCL), is a genetically and clinically heterogeneous disease. Building on existing clinical prognostic scores in... 
Journal Article
mBio, ISSN 2161-2129, 03/2018, Volume 9, Issue 2, p. e02333-17
Journal Article