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1. Full Text X-ray free electron laser single-particle analysis for biological systems
by Miyashita, Osamu and Joti, Yasumasa
Current opinion in structural biology, ISSN 0959-440X, 04/2017, Volume 43, pp. 163 - 169
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Lasers | Molecular Imaging - instrumentation | X-Rays | Molecular Imaging - methods | Imaging, Three-Dimensional | Equipment Design | Electrons | Free electron lasers | Index Medicus
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2. Full Text Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL
by Suga, Michihiro and Akita, Fusamichi and Sugahara, Michihiro and Kubo, Minoru and Nakajima, Yoshiki and Nakane, Takanori and Yamashita, Keitaro and Umena, Yasufumi and Nakabayashi, Makoto and Yamane, Takahiro and Nakano, Takamitsu and Suzuki, Mamoru and Masuda, Tetsuya and Inoue, Shigeyuki and Kimura, Tetsunari and Nomura, Takashi and Yonekura, Shinichiro and Yu, Long-Jiang and Sakamoto, Tomohiro and Motomura, Taiki and Chen, Jing-Hua and Kato, Yuki and Noguchi, Takumi and Tono, Kensuke and Joti, Yasumasa and Kameshima, Takashi and Hatsui, Takaki and Nango, Eriko and Tanaka, Rie and Naitow, Hisashi and Matsuura, Yoshinori and Yamashita, Ayumi and Yamamoto, Masaki and Nureki, Osamu and Yabashi, Makina and Ishikawa, Tetsuya and Iwata, So and Shen, Jian-Ren
Nature (London), ISSN 0028-0836, 03/2017, Volume 543, Issue 7643, pp. 131 - 135
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Protons | Temperature | Nonheme Iron Proteins - metabolism | Electron Transport - radiation effects | Cyanobacteria - chemistry | Crystallography - methods | Oxygen - metabolism | Fourier Analysis | Time Factors | Lasers | Light | Oxygen - chemistry | Water - chemistry | Nonheme Iron Proteins - chemistry | Biocatalysis - radiation effects | Water - metabolism | Models, Molecular | Nonheme Iron Proteins - radiation effects | Manganese - chemistry | Photosystem II Protein Complex - metabolism | Manganese - metabolism | Photosystem II Protein Complex - radiation effects | Photosystem II Protein Complex - chemistry | Oxygen - radiation effects | Electrons | Chemical bonds | Physiological aspects | Photosystem II | Structure | Photosynthesis research | Membrane proteins | Datasets | Ligands | Fourier transforms | Binding sites | Index Medicus
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3. Full Text Ion-ion interactions in the denatured state contribute to the stabilization of CutA1 proteins
by Yutani, Katsuhide and Matsuura, Yoshinori and Naitow, Hisashi and Joti, Yasumasa
Scientific reports, ISSN 2045-2322, 12/2018, Volume 8, Issue 1, pp. 7613 - 9
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Hyperthermophiles | Disulfide bonds | Entropy | Hydrophobicity | Simulation | Denaturation | Index Medicus
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4. Full Text Viscosity-adjustable grease matrices for serial nanocrystallography
by Sugahara, Michihiro and Motomura, Koji and Suzuki, Mamoru and Masuda, Tetsuya and Joti, Yasumasa and Numata, Keiji and Tono, Kensuke and Yabashi, Makina and Ishikawa, Tetsuya
Scientific reports, ISSN 2045-2322, 01/2020, Volume 10, Issue 1, pp. 1371 - 1371
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Viscosity | Endopeptidase K | Grease | Protein structure | Crystallography | Proteinase | Index Medicus
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5. Full Text Nucleosomal arrays self‐assemble into supramolecular globular structures lacking 30‐nm fibers
by Maeshima, Kazuhiro and Rogge, Ryan and Tamura, Sachiko and Joti, Yasumasa and Hikima, Takaaki and Szerlong, Heather and Krause, Christine and Herman, Jake and Seidel, Erik and DeLuca, Jennifer and Ishikawa, Tetsuya and Hansen, Jeffrey C
The EMBO journal, ISSN 0261-4189, 05/2016, Volume 35, Issue 10, pp. 1115 - 1132
X‐ray scattering | analytical ultracentrifugation | microscopy | nucleosomal array | 10‐nm chromatin fiber | 10-nm chromatin fiber | X-ray scattering | Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Magnesium Chloride - pharmacology | Micrococcal Nuclease - metabolism | Humans | Nucleosomes - drug effects | Nucleosomes - metabolism | DNA - metabolism | HeLa Cells | Molecular structure | Chromatin | Index Medicus | Chromatin, Epigenetics, Genomics & Functional Genomics
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6. Full Text Human mitotic chromosomes consist predominantly of irregularly folded nucleosome fibres without a 30‐nm chromatin structure
by Nishino, Yoshinori and Eltsov, Mikhail and Joti, Yasumasa and Ito, Kazuki and Takata, Hideaki and Takahashi, Yukio and Hihara, Saera and Frangakis, Achilleas S and Imamoto, Naoko and Ishikawa, Tetsuya and Maeshima, Kazuhiro
The EMBO journal, ISSN 0261-4189, 04/2012, Volume 31, Issue 7, pp. 1644 - 1653
X‐ray sacattering | fractal structure | 30‐nm chromatin fibre | cryo‐EM | chromosome structure | Chromosome structure | X-ray sacattering | 30-nm chromatin fibre | cryo-EM | Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Chromatin - ultrastructure | Mitosis | Nucleosomes - chemistry | Humans | Scattering, Small Angle | Chromosomes, Human - ultrastructure | Protein Folding | Chromosomes, Human - chemistry | Cryoelectron Microscopy | X-Ray Diffraction | HeLa Cells | Nucleosomes - ultrastructure | Chromatin - chemistry | Chromatin | Molecular structure | Molecular biology | Chromosomes | Genomics | Index Medicus
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7. Full Text Imaging live cell in micro-liquid enclosure by X-ray laser diffraction
by Kimura, Takashi and Joti, Yasumasa and Shibuya, Akemi and Song, Changyong and Kim, Sangsoo and Tono, Kensuke and Yabashi, Makina and Tamakoshi, Masatada and Moriya, Toshiyuki and Oshima, Tairo and Ishikawa, Tetsuya and Bessho, Yoshitaka and Nishino, Yoshinori
Nature communications, ISSN 2041-1723, 01/2014, Volume 5, Issue 1, pp. 3052 - 3052
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Actinobacteria - cytology | Scattering, Radiation | Animals | X-Ray Diffraction - methods | Lasers | Imaging, Three-Dimensional - methods | Index Medicus
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8. Full Text Grease matrix as a versatile carrier of proteins for serial crystallography
by Sugahara, Michihiro and Mizohata, Eiichi and Nango, Eriko and Suzuki, Mamoru and Tanaka, Tomoyuki and Masuda, Tetsuya and Tanaka, Rie and Shimamura, Tatsuro and Tanaka, Yoshiki and Suno, Chiyo and Ihara, Kentaro and Pan, Dongqing and Kakinouchi, Keisuke and Sugiyama, Shigeru and Murata, Michio and Inoue, Tsuyoshi and Tono, Kensuke and Song, Changyong and Park, Jaehyun and Kameshima, Takashi and Hatsui, Takaki and Joti, Yasumasa and Yabashi, Makina and Iwata, S
Nature methods, ISSN 1548-7091, 11/2014, Volume 12, Issue 1, pp. 61 - 63
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Crystallography, X-Ray - methods | Aldose-Ketose Isomerases - chemistry | Lubricants | Fatty Acid Binding Protein 3 | Lasers | Muramidase - chemistry | Plant Proteins - chemistry | Crystallization | Fatty Acid-Binding Proteins - chemistry | Mineral Oil | Proteins - chemistry | Proteins | Usage | Lubrication and lubricants | Research | Structure | Crystallography | Methods | Index Medicus
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9. Full Text Monte Carlo study for optimal conditions in single-shot imaging with femtosecond x-ray laser pulses
by Park, Jaehyun and Joti, Yasumasa and Ishikawa, Tetsuya and Song, Changyong
Applied physics letters, ISSN 0003-6951, 12/2013, Volume 103, Issue 26, p. 264101
Physical Sciences | Physics | Science & Technology | Physics, Applied | Femtosecond | X ray lasers | Particle injection | Computer simulation | Free electron lasers | Atomic structure | Monte Carlo simulation | Biological materials | FREE ELECTRON LASERS | VELOCITY | X RADIATION | MONTE CARLO METHOD | PARTICLES | CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSICS | BEAMS | X-RAY LASERS | MEMBRANES | OPTIMIZATION | COMPUTERIZED SIMULATION | PULSES
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10. Full Text Gaussian mixture model for coarse-grained modeling from XFEL
by Nagai, Tetsuro and Mochizuki, Yuki and Joti, Yasumasa and Tama, Florence and Miyashita, Osamu
Optics express, ISSN 1094-4087, 10/2018, Volume 26, Issue 20, pp. 26734 - 26749
Optics | Physical Sciences | Science & Technology
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