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Database, ISSN 1758-0463, 01/2018, Volume 2018, Issue 2018, p. 1
We present a system for automatically identifying a multitude of biomedical entities from the literature. This work is based on our previous efforts in the... 
Fuzzy Logic | Molecular Sequence Annotation | Algorithms
Journal Article
Journal of Animal Science and Biotechnology, ISSN 1674-9782, 2016, Volume 7, Issue 1, p. 27
Journal Article
by Jiang, Yuxiang and Oron, Tal Ronnen and Clark, Wyatt T and Bankapur, Asma R and Anea, D', Daniel and Lepore, Rosalba and Funk, Christopher S and Kahanda, Indika and Verspoor, Karin M and Ben-Hur, Asa and Koo, Da Chen Emily and Penfold-Brown, Duncan and Shasha, Dennis and Youngs, Noah and Bonneau, Richard and Lin, Alexana and Sahraeian, Sayed M.E and Martelli, Pier Luigi and ti, Giuseppe and Casadio, Rita and Cao, Renzhi and Zhong, Zhaolong and Cheng, Jianlin and Altenhoff, Aian and Skunca, Nives and Dessimoz, Christophe and Dogan, Tunca and Hakala, Kai and Kaewphan, Suwisa and Mehryary, Farrokh and Salakoski, Tapio and Ginter, Filip and Fang, Hai and Smithers, Ben and Oates, Matt and Gough, Julian and Törönen, Petri and Koskinen, Patrik and Holm, Liisa and Chen, Ching Tai and Hsu, Wen Lian and Bryson, Kevin and Cozzetto, Domenico and Minneci, Federico and Jones, David T and Chapman, Samuel and BKC, Dukka and Khan, Ishita K and Kihara, Daisuke and Ofer, Dan and Rappoport, Nadav and Stern, Amos and Cibrian-Uhalte, Elena and Denny, Paul and Foulger, Rebecca E and Hieta, Reija and Legge, Duncan and Lovering, Ruth C and Magrane, Michele and Melidoni, Anna N and Mutowo-Meullenet, Prudence and Pichler, Klemens and Shypitsyna, Aleksana and Li, Biao and Zakeri, Pooya and ElShal, Sarah and Tranchevent, Léon Charles and Das, Sayoni and Dawson, Natalie L and Lee, David and Lees, Jonathan G and Sillitoe, Ian and Bhat, Prajwal and Nepusz, Tamás and Romero, Alfonso E and Sasidharan, Rajkumar and Yang, Haixuan and Paccanaro, Alberto and Gillis, Jesse and Sedeño-Cortés, Aiana E and Pavlidis, Paul and Feng, Shou and Cejuela, Juan M and Goldberg, Tatyana and Hamp, Tobias and Richter, Lothar and Salamov, Asaf and Gabaldon, Toni and Marcet-Houben, Marina and Supek, Fran and Gong, Qingtian and Ning, Wei and Zhou, Yuanpeng and Tian, Weidong and Falda, Marco and Fontana, Paolo and Lavezzo, Enrico and Toppo, Stefano and Ferrari, Carlo and Giollo, Manuel and ...
Genome Biology, ISSN 1474-7596, 2016, Volume 17, Issue 1, p. 184
Journal Article
by Zhou, Naihui and Jiang, Yuxiang and Bergquist, Timothy R and Lee, Alexandra J and Kacsoh, Balint Z and Crocker, Alex W and Lewis, Kimberley A and Georghiou, George and Nguyen, Huy N and Hamid, Md Nafiz and Davis, Larry and Dogan, Tunca and Atalay, Volkan and Rifaioglu, Ahmet S and Dalkıran, Alperen and Cetin Atalay, Rengul and Zhang, Chengxin and Hurto, Rebecca L and Freddolino, Peter L and Zhang, Yang and Bhat, Prajwal and Supek, Fran and Fernández, José M and Gemovic, Branislava and Perovic, Vladimir R and Davidović, Radoslav S and Sumonja, Neven and Veljkovic, Nevena and Asgari, Ehsaneddin and Mofrad, Mohammad R.K and Profiti, Giuseppe and Savojardo, Castrense and Martelli, Pier Luigi and Casadio, Rita and Boecker, Florian and Schoof, Heiko and Kahanda, Indika and Thurlby, Natalie and McHardy, Alice C and Renaux, Alexandre and Saidi, Rabie and Gough, Julian and Freitas, Alex A and Antczak, Magdalena and Fabris, Fabio and Wass, Mark N and Hou, Jie and Cheng, Jianlin and Wang, Zheng and Romero, Alfonso E and Paccanaro, Alberto and Yang, Haixuan and Goldberg, Tatyana and Zhao, Chenguang and Holm, Liisa and Törönen, Petri and Medlar, Alan J and Zosa, Elaine and Borukhov, Itamar and Novikov, Ilya and Wilkins, Angela and Lichtarge, Olivier and Chi, Po-Han and Tseng, Wei-Cheng and Linial, Michal and Rose, Peter W and Dessimoz, Christophe and Vidulin, Vedrana and Dzeroski, Saso and Sillitoe, Ian and Das, Sayoni and Lees, Jonathan Gill and Jones, David T and Wan, Cen and Cozzetto, Domenico and Fa, Rui and Torres, Mateo and Warwick Vesztrocy, Alex and Rodriguez, Jose Manuel and Tress, Michael L and Frasca, Marco and Notaro, Marco and Grossi, Giuliano and Petrini, Alessandro and Re, Matteo and Valentini, Giorgio and Mesiti, Marco and Roche, Daniel B and Reeb, Jonas and Ritchie, David W and Aridhi, Sabeur and Alborzi, Seyed Ziaeddin and Devignes, Marie-Dominique and Koo, Da Chen Emily and Bonneau, Richard and Gligorijević, Vladimir and Barot, Meet and Fang, Hai and Toppo, Stefano and Lavezzo, Enrico and ...
Genome Biology, ISSN 1474-760X, 12/2019, Volume 20, Issue 1, pp. 1 - 23
Abstract Background The Critical Assessment of Functional Annotation (CAFA) is an ongoing, global, community-driven effort to evaluate and improve the... 
Databases | Distributed, Parallel, and Cluster Computing | Bioinformatics | Machine Learning | Artificial Intelligence | Computer Science | Biofilm | Long-term memory | Critical assessment | Community challenge | Protein function prediction
Journal Article
by Jiang, Yuxiang and Oron, Ronnen Tal and Clark, T Wyatt and Bankapur, R Asma and D’Andrea, Daniel and Lepore, Rosalba and Funk, S Christopher and Kahanda, Indika and Verspoor, M Karin and Ben-Hur, Asa and Koo, Emily Da Chen and Penfold-Brown, Duncan and Shasha, Dennis and Youngs, Noah and Bonneau, Richard and Lin, Alexandra and Sahraeian, E Sayed M and Martelli, Luigi Pier and Profiti, Giuseppe and Casadio, Rita and Cao, Renzhi and Zhong, Zhaolong and Cheng, Jianlin and Altenhoff, Adrian and Skunca, Nives and Dessimoz, Christophe and Dogan, Tunca and Hakala, Kai and Kaewphan, Suwisa and Mehryary, Farrokh and Salakoski, Tapio and Ginter, Filip and Fang, Hai and Smithers, Ben and Oates, Matt and Gough, Julian and Törönen, Petri and Koskinen, Patrik and Holm, Liisa and Chen, Ching-Tai and Hsu, Wen-Lian and Bryson, Kevin and Cozzetto, Domenico and Minneci, Federico and Jones, T David and Chapman, Samuel and BKC, Dukka and Khan, K Ishita and Kihara, Daisuke and Ofer, Dan and Rappoport, Nadav and Stern, Amos and Cibrian-Uhalte, Elena and Denny, Paul and Foulger, E Rebecca and Hieta, Reija and Legge, Duncan and Lovering, C Ruth and Magrane, Michele and Melidoni, N Anna and Mutowo-Meullenet, Prudence and Pichler, Klemens and Shypitsyna, Aleksandra and Li, Biao and Zakeri, Pooya and ElShal, Sarah and Tranchevent, Léon-Charles and Das, Sayoni and Dawson, L Natalie and Lee, David and Lees, G Jonathan and Sillitoe, Ian and Bhat, Prajwal and Nepusz, Tamás and Romero, E Alfonso and Sasidharan, Rajkumar and Yang, Haixuan and Paccanaro, Alberto and Gillis, Jesse and Sedeño-Cortés, E Adriana and Pavlidis, Paul and Feng, Shou and Cejuela, M Juan and Goldberg, Tatyana and Hamp, Tobias and Richter, Lothar and Salamov, Asaf and Gabaldon, Toni and Marcet-Houben, Marina and Supek, Fran and Gong, Qingtian and Ning, Wei and Zhou, Yuanpeng and Tian, Weidong and Falda, Marco and Fontana, Paolo and Lavezzo, Enrico and Toppo, Stefano and Ferrari, Carlo and Giollo, Manuel and ...
ISSN 1474-7596, 2016
Background: A major bottleneck in our understanding of the molecular underpinnings of life is the assignment of function to proteins. While molecular... 
disease gene prioritization | protein function prediction
Journal Article
SEM 2013 - 2nd Joint Conference on Lexical and Computational Semantics, 2013, Volume 2, pp. 651 - 659
Conference Proceeding
CEUR Workshop Proceedings, ISSN 1613-0073, 2017, Volume 1996, pp. 59 - 63
Conference Proceeding
SMBM 2012 - Proceedings of the 5th International Symposium on Semantic Mining in Biomedicine, 2012, pp. 91 - 96
Conference Proceeding
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