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1. Full Text Towards Early Detection of IPF
by Schupp, Jonas Christian and Kaminski, Naftali
American journal of respiratory and critical care medicine, ISSN 1073-449X, 08/2019
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2. Full Text Erratum: Peripheral blood proteins predict mortality in idiopathic pulmonary fibrosis
by Kaminski, Naftali
American Journal of Respiratory and Critical Care Medicine, ISSN 1073-449X, 02/2012, Volume 185, Issue 4, pp. 464 - 464
Correspondence
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3. Full Text Idiopathic pulmonary fibrosis: Aberrant recapitulation of developmental programs?
by Selman, Moisés and Pardo, Annie and Kaminski, Naftali
PLoS Medicine, ISSN 1549-1277, 03/2008, Volume 5, Issue 3, pp. 0373 - 0380
The authors discuss evidence suggesting that embryonic signaling pathways involved in epithelium/mesenchymal communication and epithelial cell plasticity may... 
EPITHELIAL-MESENCHYMAL TRANSITION | MEDICINE, GENERAL & INTERNAL | GROWTH-FACTOR-BETA | TGF-BETA | SONIC HEDGEHOG SHH | BONE MORPHOGENETIC PROTEIN | GENE-EXPRESSION | AGGRESSIVE FIBROMATOSIS | FIBROBLAST ACTIVATION PROTEIN | HYPERPLASTIC CUTANEOUS WOUNDS | BETA-CATENIN STABILIZATION | Pulmonary Fibrosis - therapy | Lung - pathology | Cell Proliferation | Morphogenesis - genetics | Signal Transduction | Humans | Epithelial Cells - pathology | Pulmonary Fibrosis - genetics | Pulmonary Fibrosis - pathology | Fibroblasts - pathology | Lung - embryology | Transcription, Genetic | Lung - metabolism | Mesoderm - pathology | Genes, Developmental | Genetics and Genomics | Genetics | Research in Translation | Developmental Biology | Interstitial lung disease | Respiratory Medicine
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4. Full Text WNT5A in extracellular vesicles a new frontier for pulmonary fibrosis
by Ahangari, Farida and Kaminski, Naftali
American Journal of Respiratory and Critical Care Medicine, ISSN 1073-449X, 12/2018, Volume 198, Issue 12, pp. 1468 - 1470
[...]they convincingly demonstrate that WNT5A, a secreted molecule previously implicated in pulmonary fibrosis, is secreted bound to EVs in murine and human... 
RESPIRATORY SYSTEM | CRITICAL CARE MEDICINE | Studies | Fibroblasts | Pulmonary fibrosis | Pathogenesis | Lung diseases | Lung cancer
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5. Full Text Toward Precision Medicine of Symptom Control in Asthma
by Gomez, Jose L and Kaminski, Naftali
American Journal of Respiratory and Critical Care Medicine, ISSN 1073-449X, 01/2017, Volume 195, Issue 2, pp. 147 - 148
ADULTS | PHENOTYPES | RESPIRATORY SYSTEM | CRITICAL CARE MEDICINE | Humans | Asthma | Precision Medicine
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6. Full Text Acute exacerbation of idiopathic pulmonary fibrosis an international working group report
by Collard, Harold R and Ryerson, Christopher J and Corte, Tamera J and Jenkins, Gisli and Kondoh, Yasuhiro and Lederer, David J and Lee, Joyce S and Maher, Toby M and Wells, Athol U and Antoniou, Katerina M and Behr, Juergen and Brown, Kevin K and Cottin, Vincent and Flaherty, Kevin R and Fukuoka, Junya and Hansell, David M and Johkoh, Takeshi and Kaminski, Naftali and Kim, Dong Soon and Kolb, Martin and Lynch, David A and Myers, Jeffrey L and Raghu, Ganesh and Richeldi, Luca and Taniguchi, Hiroyuki and Martinez, Fernando J
American Journal of Respiratory and Critical Care Medicine, ISSN 1073-449X, 08/2016, Volume 194, Issue 3, pp. 265 - 275
Acute exacerbation of idiopathic pulmonary fibrosis has been defined as an acute, clinically significant, respiratory deterioration of unidentifiable cause.... 
Pulmonary fibrosis | Diagnosis | Management | Review | Acute exacerbation | RISK-FACTORS | IMMOBILIZED FIBER COLUMN | POLYMYXIN-B HEMOPERFUSION | INTERSTITIAL PNEUMONIA | diagnosis | N-ACETYLCYSTEINE | RESPIRATORY-DISTRESS-SYNDROME | BRONCHOALVEOLAR LAVAGE | LUNG-CANCER | management | ANTICOAGULANT-THERAPY | RESPIRATORY SYSTEM | review | pulmonary fibrosis | acute exacerbation | PLACEBO-CONTROLLED TRIAL | CRITICAL CARE MEDICINE | Idiopathic Pulmonary Fibrosis - epidemiology | Idiopathic Pulmonary Fibrosis - therapy | Acute Disease | Prognosis | Internationality | Humans | Risk Factors | Disease Management
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7. Full Text Mesenchymal stem cells use extracellular vesicles to outsource mitophagy and shuttle microRNAs
by Phinney, Donald G and Di Giuseppe, Michelangelo and Njah, Joel and Sala, Ernest and Shiva, Sruti and St Croix, Claudette M and Stolz, Donna B and Watkins, Simon C and Di, Y. Peter and Leikauf, George D and Kolls, Jay and Riches, David W. H and Deiuliis, Giuseppe and Kaminski, Naftali and Boregowda, Siddaraju V and McKenna, David H and Ortiz, Luis A
Nature Communications, ISSN 2041-1723, 10/2015, Volume 6, Issue 1, p. 8472
Mesenchymal stem cells (MSCs) and macrophages are fundamental components of the stem cell niche and function coordinately to regulate haematopoietic stem cell... 
PROGENITOR CELLS | MACROPHAGES | MULTIDISCIPLINARY SCIENCES | BONE-MARROW NICHE | EXOSOMES | LUNG INJURY | MICROVESICLES | AUTOPHAGY | MITOCHONDRIAL-DNA | STROMAL CELLS | HEMATOPOIETIC STEM | Exosomes - metabolism | Silicosis - metabolism | Extracellular Vesicles - ultrastructure | Oxidative Stress | Humans | Toll-Like Receptor 9 - genetics | MicroRNAs - metabolism | Arrestins - metabolism | Extracellular Vesicles - metabolism | Flow Cytometry | Mesenchymal Stromal Cells - ultrastructure | Cell-Derived Microparticles - metabolism | Toll-Like Receptors - metabolism | Signal Transduction | Myeloid Differentiation Factor 88 - genetics | Mesenchymal Stromal Cells - metabolism | Toll-Like Receptor 4 - genetics | Mitochondria - metabolism | Microscopy, Electron | Mitochondrial Degradation - physiology | Blotting, Western | Macrophages - metabolism | Animals | Mice | Receptors, Immunologic - genetics
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8. Epigenetics in idiopathic pulmonary fibrosis
by Argyrios Tzouvelekis and Naftali Kaminski
Biochemistry and Cell Biology, ISSN 0829-8211, 04/2015, Volume 93, Issue 2, p. 159
  Idiopathic pulmonary fibrosis (IPF) is a lethal chronic lung disorder with no effective treatment and a prognosis worse than that of lung cancer. Despite... 
Pathology | Pulmonary fibrosis | Pathogenesis | Medical prognosis | Lung diseases | Epigenetics | Deoxyribonucleic acid--DNA
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9. Full Text Time to share: lessons from post hoc analyses of IPF trials
by Kass, Daniel J and Kaminski, Naftali
Thorax, ISSN 0040-6376, 02/2017, Volume 72, Issue 2, pp. 101 - 102
  [...]statins, proton pump inhibitors and whatever else are highlighted by secondary analyses, should be prescribed based on their primary indication and not... 
INTERSTITIAL LUNG-DISEASE | SURVIVAL | IDIOPATHIC PULMONARY-FIBROSIS | RESPIRATORY SYSTEM | STATINS | CLINICAL-TRIALS | Idiopathic Pulmonary Fibrosis | Humans | Studies | Pharmaceutical industry | Mortality | Statins
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10. Full Text Epigenetics in idiopathic pulmonary fibrosis1
by Kaminski, Naftali and Tzouvelekis, Argyrios
Biochemistry and Cell Biology, ISSN 0829-8211, 2015, Volume 93, Issue 2, pp. 159 - 170
Idiopathic pulmonary fibrosis (IPF) is a lethal chronic lung disorder with no effective treatment and a prognosis worse than that of lung cancer. Despite... 
maladie fibro-proliférative | histone modification | traitements épigénétiques | DNA methylation | ARN non codant | epigenetic treatments | méthylation d’ADN | modification des histones | noncoding RNAs | fibroproliferative disorders | Fibroproliferative disorders | Histone modification | Epigenetic treatments | Noncoding RNAs
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11. Full Text A Variant in the Promoter of MUC5B and Idiopathic Pulmonary Fibrosis
by Kaminski, Naftali and Zhang, Yingze and Noth, Imre and Garcia, Joe G.N
The New England Journal of Medicine, ISSN 0028-4793, 04/2011, Volume 364, Issue 16, pp. 1576 - 1577
In this study, a single-nucleotide polymorphism in the mucus-forming gene MUC5B was strongly associated with the presence of idiopathic pulmonary fibrosis... 
MEDICINE, GENERAL & INTERNAL | Idiopathic Pulmonary Fibrosis - genetics | Mucin-5B - genetics | Humans | Middle Aged | Female | Male | Aged | Polymorphism, Single Nucleotide | Case-Control Studies | Confidence intervals | Lungs | Disease | Lung diseases
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12. Finally, progress in pulmonary hypertension associated with heart failure with preserved ejection fraction
by Fares, Wassim H and Kaminski, Naftali
American Journal of Respiratory Cell and Molecular Biology, ISSN 1044-1549, 04/2017, Volume 56, Issue 4, pp. 421 - 422
[...]although there may be additional findings hiding in the genome-wide association study results, Egfr is definitely a good starting point. [...]Kelly and... 
RESPIRATORY SYSTEM | BIOCHEMISTRY & MOLECULAR BIOLOGY | SEX | CELL BIOLOGY | Stroke Volume | Heart Failure - complications | Heart Failure - therapy | Animals | Humans | Heart Failure - physiopathology | Hypertension, Pulmonary - physiopathology | Heart Failure - metabolism | Hypertension, Pulmonary - metabolism | Hypertension, Pulmonary - etiology | Hypertension, Pulmonary - therapy | Disease Models, Animal | Studies | Heart failure | Political correctness | Hypotheses | Sexes | Pulmonary arteries | Rodents | Genomes | Metabolism | Laboratory animals | Fractions | Pulmonary hypertension
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13. Full Text Impact of transcriptomics on our understanding of pulmonary fibrosis
by Vukmirovic, Milica and Kaminski, Naftali
Frontiers in Medicine, 04/2018, Volume 5
Interstitial lung diseases | Transcriptomics | Idiopathic pulmonary fibrosis | Biomarkers | Microenvironment | Microarray | RNAseq
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14. Full Text Peripheral blood proteins predict mortality in idiopathic pulmonary fibrosis
by Richards, Thomas J and Kaminski, Naftali and Baribaud, Fred and Flavin, Susan and Brodmerkel, Carrie and Horowitz, Daniel and Li, Katherine and Choi, Jiin and Vuga, Louis J and Lindell, Kathleen O and Klesen, Melinda and Zhang, Yingze and Gibson, Kevin F
American Journal of Respiratory and Critical Care Medicine, ISSN 1073-449X, 01/2012, Volume 185, Issue 1, pp. 67 - 76
Rationale: Idiopathic pulmonary fibrosis (IPF) is a lethal lung disease of unknown etiology with a variable and unpredictable course. Objectives: The aim of... 
Biomarkers | Adhesion molecules | MMP-7 | Personalized medicine | Mortality prediction | ACTIVATION | INTERCELLULAR-ADHESION MOLECULE-1 | ICAM-1 EXPRESSION | biomarkers | N-ACETYLCYSTEINE | SERUM | CLINICAL-COURSE | personalized medicine | EPITHELIAL-CELLS | GENE | adhesion molecules | RESPIRATORY SYSTEM | MATRILYSIN | mortality prediction | MICE | CRITICAL CARE MEDICINE | Cell Adhesion Molecules - blood | Enzyme-Linked Immunosorbent Assay - methods | Predictive Value of Tests | Matrix Metalloproteinase 7 - blood | Humans | Proportional Hazards Models | Male | Biomarkers - blood | Idiopathic Pulmonary Fibrosis - blood | S100A12 Protein | Vascular Cell Adhesion Molecule-1 - blood | Matrix Metalloproteinase 1 - blood | Idiopathic Pulmonary Fibrosis - mortality | S100 Proteins - blood | Survival Analysis | Female | Intercellular Adhesion Molecule-1 - blood | Aged | Interleukin-8 - blood | Matrix Metalloproteinases - blood | Cohort Studies
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15. Full Text Features of mammalian microRNA promoters emerge from polymerase II chromatin immunoprecipitation data
by Corcoran, David L and Pandit, Kusum V and Gordon, Ben and Bhattacharjee, Arindam and Kaminski, Naftali and Benos, Panayiotis V
PLoS ONE, ISSN 1932-6203, 04/2009, Volume 4, Issue 4, pp. e5279 - e5279
Background: MicroRNAs (miRNAs) are short, non-coding RNA regulators of protein coding genes. miRNAs play a very important role in diverse biological processes... 
MULTIDISCIPLINARY SCIENCES | Promoter Regions, Genetic | Animals | Chromatin Immunoprecipitation | Humans | Computational Biology | CpG Islands | MicroRNAs - genetics | RNA Polymerase II - metabolism | RNA, Untranslated - genetics | Chromatin | Algorithms | MicroRNA | Genetic transcription | Genes | Regulators | Transcription factors | Immunoprecipitation | Transcription | Exons | Gene regulation | Genomics | Critical care | Genomes | DNA-directed RNA polymerase | Progress reports | Data bases | Proteins | Classification | DNA methylation | Bioinformatics | Public health | Deoxyribonucleic acid--DNA | Pol II | Introns | Lung diseases | MiRNA | Gene expression | Promoters | Biological activity | Medicine | Studies | Polymerase | Ribonucleic acids | Insects | Neural networks | Non-coding RNA | Binding sites | RNA polymerase II | Deoxyribonucleic acid | DNA
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16. Full Text Solving the conundrum: Immunogenetics of sarcoidosis
by Kaminski, Naftali and Drake, Wonder P
American Journal of Respiratory and Critical Care Medicine, ISSN 1073-449X, 09/2015, Volume 192, Issue 6, pp. 652 - 654
PERIPHERAL-BLOOD | PSORIASIS SUSCEPTIBILITY LOCI | RESPIRATORY SYSTEM | CRITICAL CARE MEDICINE | Genetic Predisposition to Disease | Genome-Wide Association Study | Humans | Sarcoidosis - genetics | Female | Male | Polymorphism, Single Nucleotide
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17. Full Text Update in diffuse parenchymal lung disease 2013
by Rosas, Ivan O and Kaminski, Naftali
American Journal of Respiratory and Critical Care Medicine, ISSN 1073-449X, 02/2015, Volume 191, Issue 3, pp. 270 - 274
The period covered by this update can be considered as the most exciting period in idiopathic pulmonary fibrosis (IPF) research. It started with the... 
ILD | Personalized medicine | Immunity | Genomics | IPF | CELLS | MUC5B PROMOTER POLYMORPHISM | PIRFENIDONE | SUSCEPTIBILITY | immunity | BETA-CATENIN | personalized medicine | RESPIRATORY SYSTEM | genomics | IDIOPATHIC PULMONARY-FIBROSIS | GENOME-WIDE ASSOCIATION | CRITICAL CARE MEDICINE | Idiopathic Pulmonary Fibrosis - genetics | United States | Humans | Treatment Outcome | Drug Approval | Enzyme Inhibitors - therapeutic use | Lung Diseases, Interstitial - drug therapy | Disease Progression | Polymorphism, Genetic | Clinical Trials, Phase III as Topic | Lung Diseases, Interstitial - genetics | Anti-Inflammatory Agents, Non-Steroidal - therapeutic use | Indoles - therapeutic use | Pyridones - therapeutic use | Idiopathic Pulmonary Fibrosis - drug therapy | United States Food and Drug Administration | Pulmonary, Sleep, and Critical Care Update
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18. Full Text From signatures to models: Understanding cancer using microarrays
by Segal, Eran and Friedman, Nir and Friedman, Nir and Kaminski, Naftali and Kaminski, Naftali and Regev, Aviv and Koller, Daphne and Koller, Daphne
Nature Genetics, ISSN 1061-4036, 06/2005, Volume 37, Issue 6S, pp. S38 - S45
Genomics has the potential to revolutionize the diagnosis and management of cancer by offering an unprecedented comprehensive view of the molecular... 
TRANSCRIPTION FACTORS | REGULATORY NETWORKS | GENETICS & HEREDITY | GENE-EXPRESSION | LUNG ADENOCARCINOMA | C-MYC | PATTERNS | CELL-CYCLE | HUMAN BREAST-CANCER | BINDING-SITES | GENOME | Algorithms | Animals | Neoplasms - genetics | Models, Biological | Oligonucleotide Array Sequence Analysis - methods | Humans | Computational Biology | Gene Expression Regulation | Transcription, Genetic | Gene Expression Profiling | Care and treatment | Usage | DNA microarrays | Genetic aspects | Diagnosis | Research | Genetic transcription | Health aspects | Cancer
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19. Full Text Inhibition and role of let-7d in idiopathic pulmonary fibrosis
by Pandit, Kusum V and Corcoran, David and Yousef, Hanadie and Yarlagadda, Manohar and Tzouvelekis, Argyris and Gibson, Kevin F and Konishi, Kazuhisa and Yousem, Samuel A and Singh, Mandal and Handley, Daniel and Richards, Thomas and Selman, Moises and Watkins, Simon C and Pardo, Annie and Ben-Yehudah, Ahmi and Bouros, Demosthenes and Eickelberg, Oliver and Ray, Prabir and Benos, Panayiotis V and Kaminski, Naftali
American Journal of Respiratory and Critical Care Medicine, ISSN 1073-449X, 07/2010, Volume 182, Issue 2, pp. 220 - 229
Rationale: Idiopathic pulmonary fibrosis (IPF) is a chronic, progressive, and usually lethal fibrotic lung disease characterized by profound changes in... 
CELLS | MICRORNA GENES | HMGA2 (high-mobility group AT-hook 2) | PHENOTYPE | MIR-200 FAMILY | REPRESSORS ZEB1 | transforming growth factor-beta | PROTEIN-1 | GENOMICS | RESPIRATORY SYSTEM | IN-VIVO | GENE-EXPRESSION | microRNA | epithelial-mesenchymal transition | CRITICAL CARE MEDICINE | Epithelial Cells - metabolism | Cadherins - metabolism | S100 Calcium-Binding Protein A4 | Vimentin - metabolism | Down-Regulation | Humans | Mice, Inbred C57BL | Actins - metabolism | Cells, Cultured | Transforming Growth Factor beta - physiology | MicroRNAs - metabolism | S100 Proteins - metabolism | Smad3 Protein - metabolism | Idiopathic Pulmonary Fibrosis - metabolism | Animals | In Situ Hybridization | HMGA2 Protein - metabolism | Pulmonary Alveoli - metabolism | Polymerase Chain Reaction | Idiopathic Pulmonary Fibrosis - pathology | Lung - metabolism | Mice | epithelial–mesenchymal transition | transforming growth factor-β | F. Interstitial Lung Disease
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