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science & technology (10) 10
genomes (7) 7
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humans (5) 5
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research (3) 3
research article (3) 3
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[sdv.bbm.gtp]life sciences [q-bio]/biochemistry, molecular biology/genomics [q-bio.gn] (1) 1
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alternative splicing (1) 1
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analysis (1) 1
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1. Full Text A communal catalogue reveals Earth's multiscale microbial diversity
by Thompson, Luke R and Sanders, Jon G and McDonald, Daniel and Amir, Amnon and Ladau, Joshua and Locey, Kenneth J and Prill, Robert J and Tripathi, Anupriya and Gibbons, Sean M and Ackermann, Gail and Navas-Molina, Jose A and Janssen, Stefan and Kopylova, Evguenia and Vazquez-Baeza, Yoshiki and Gonzalez, Antonio and Morton, James T and Mirarab, Siavash and Xu, Zhenjiang Zech and Jiang, Lingjing and Haroon, Mohamed F and Kanbar, Jad and Zhu, Qiyun and Song, Se Jin and Kosciolek, Tomasz and Bokulich, Nicholas A and Lefler, Joshua and Brislawn, Colin J and Humphrey, Gregory and Owens, Sarah M and Hampton-Marcell, Jarrad and Berg-Lyons, Donna and McKenzie, Valerie and Fierer, Noah and Fuhrman, Jed A and Clauset, Aaron and Stevens, Rick L and Shade, Ashley and Pollard, Katherine S and Goodwin, Kelly D and Jansson, Janet K and Gilbert, Jack A and Knight, Rob and Earth Microbiome Project Consortiu and Earth Microbiome Project Consortium and The Earth Microbiome Project Consortium and Argonne National Lab. (ANL), Argonne, IL (United States) and Pacific Northwest National Lab. (PNNL), Richland, WA (United States) and Naturvetenskapliga fakulteten and Faculty of Sciences and Göteborgs universitet and Gothenburg University and Institutionen för marina vetenskaper and Department of marine sciences
Nature (London), ISSN 0028-0836, 11/2017, Volume 551, Issue 7681, pp. 457 - +
CONSISTENT | ARCHAEAL | EVOLUTION | MARINE BACTERIAL | GLOBAL PATTERNS | BACTERIAL DIVERSITY | OPERON COPY NUMBER | ONTOLOGY | COMMUNITIES | NESTEDNESS | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Humans | RNA, Ribosomal, 16S - analysis | Geographic Mapping | Plants - microbiology | Gene Dosage | Archaea - isolation & purification | Biodiversity | Bacteria - genetics | Bacteria - isolation & purification | Ecology - methods | Animals | Microbiota - genetics | RNA, Ribosomal, 16S - genetics | Archaea - genetics | Earth, Planet | Environmental aspects | Observations | Microbial colonies | Biological diversity | International marketing | Nucleotide sequencing | Ribosomal RNA | Catalogs | Analysis | DNA sequencing | Microbiological research | Distribution | Genetic aspects | Research | Identification and classification | Analytical methods | Nucleotide sequence | Microbiology | Taxonomy | rRNA | Ecology | Genomes | Ribonucleic acid--RNA | Gene sequencing | Meta-analysis | Earth | Studies | Microorganisms | Phylogenetics | Bacteria | Deoxyribonucleic acid--DNA | Index Medicus | ENVIRONMENTAL SCIENCES | global | BASIC BIOLOGICAL SCIENCES | microbiome | Geosciences, Multidisciplinary | Climate Research | Klimatforskning | Oceanografi, hydrologi, vattenresurser | Oceanography, Hydrology, Water Resources | Annan geovetenskap och miljövetenskap | Multidisciplinär geovetenskap | Ekologi | Other Earth and Related Environmental Sciences | CVI Infection Biology | CVI Infectiebiologie | Food Quality and Design | VLAG | Infectiebiologie | Infection Biology
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2. Full Text Microbiome analyses of blood and tissues suggest cancer diagnostic approach
by Poore, Gregory D and Kopylova, Evguenia and Zhu, Qiyun and Carpenter, Carolina and Fraraccio, Serena and Wandro, Stephen and Kosciolek, Tomasz and Janssen, Stefan and Metcalf, Jessica and Song, Se Jin and Kanbar, Jad and Miller-Montgomery, Sandrine and Heaton, Robert and Mckay, Rana and Patel, Sandip Pravin and Swafford, Austin D and Knight, Rob
Nature (London), ISSN 0028-0836, 03/2020, Volume 579, Issue 7800, pp. 567 - 574
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Melanoma - blood | Liquid Biopsy | Melanoma - diagnosis | Reproducibility of Results | Datasets as Topic | Humans | Neoplasms - microbiology | Lung Neoplasms - microbiology | Male | Neoplasms - diagnosis | Prostatic Neoplasms - diagnosis | Case-Control Studies | DNA, Viral - blood | Neoplasms - blood | Microbiota - genetics | Plasma - microbiology | DNA, Bacterial - blood | Prostatic Neoplasms - microbiology | Prostatic Neoplasms - blood | Female | Melanoma - microbiology | Lung Neoplasms - blood | Lung Neoplasms - diagnosis | Cohort Studies | Microbiota (Symbiotic organisms) | Physiological aspects | Diagnosis | Tissues | Methods | Blood | Cancer | Care and treatment | Genomics | Machine learning | Genetic aspects | Genomes | Nucleic acids | Biotechnology industry | Adenocarcinoma | Squamous cell carcinoma | Microbiology | Pipelines | Pollution control | Microbial contamination | Melanoma | Microbiomes | Cervix | Gene expression | Contamination | Microorganisms | Diagnostic systems | Prostate | Bayesian analysis | Deoxyribonucleic acid--DNA | Tumors | Index Medicus
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3. Full Text A quantitative comparison of single-cell whole genome amplification methods
by De Bourcy, Charles F. A and De Vlaminck, Iwijn and Kanbar, Jad N and Wang, Jianbin and Gawad, Charles and Quake, Stephen R
PloS one, ISSN 1932-6203, 08/2014, Volume 9, Issue 8, pp. e105585 - e105585
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Genome, Bacterial - genetics | DNA, Bacterial - genetics | Nucleic Acid Amplification Techniques - methods | Escherichia coli - genetics | Single-Cell Analysis - methods | Polymorphism, Single Nucleotide - genetics | DNA Copy Number Variations - genetics | Genomics - methods | Genomes | Single nucleotide polymorphisms | Comparative analysis | Escherichia coli | Genomics | Methods | Bioengineering | Integrated software | Cloning | Single-nucleotide polymorphism | Contamination | Gene sequencing | Amplification | E coli | Cell cycle | Mutation | Design of experiments | Bioinformatics | Deoxyribonucleic acid--DNA | Applied physics | Index Medicus | Deoxyribonucleic acid | DNA
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4. Full Text The phylogenetic and geographic structure of Y-chromosome haplogroup R1a
by Underhill, Peter A and Poznik, G. David and Rootsi, Siiri and Järve, Mari and Lin, Alice A and Wang, Jianbin and Passarelli, Ben and Kanbar, Jad and Myres, Natalie M and King, Roy J and Di Cristofaro, Julie and Sahakyan, Hovhannes and Behar, Doron M and Kushniarevich, Alena and Šarac, Jelena and Šaric, Tena and Rudan, Pavao and Pathak, Ajai Kumar and Chaubey, Gyaneshwer and Grugni, Viola and Semino, Ornella and Yepiskoposyan, Levon and Bahmanimehr, Ardeshir and Farjadian, Shirin and Balanovsky, Oleg and Khusnutdinova, Elza K and Herrera, Rene J and Chiaroni, Jacques and Bustamante, Carlos D and Quake, Stephen R and Kivisild, Toomas and Villems, Richard
European journal of human genetics : EJHG, ISSN 1018-4813, 01/2015, Volume 23, Issue 1, pp. 124 - 131
Biochemistry & Molecular Biology | Genetics & Heredity | Life Sciences & Biomedicine | Science & Technology | Haplotypes | Europe | Gene Frequency | Humans | Phylogeography | Male | Phylogeny | Chromosomes, Human, Y | Spatial Analysis | Ethnic Groups - genetics | Asia | Alleles | Polymorphism, Single Nucleotide | Microsatellite Repeats | Evolution, Molecular | Genetic Linkage | Frequency dependence | Spatial discrimination | Genomes | Biology | Neolithic | Medicine | Phylogenetics | Population | Genetics | Mutation | Y Chromosomes | Chromosomes | Deoxyribonucleic acid--DNA | Index Medicus
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5. Full Text Single-cell-genomics-facilitated read binning of candidate phylum EM19 genomes from geothermal spring metagenomes
by Becraft, Eric D and Dodsworth, Jeremy A and Murugapiran, Senthil K and Ohlsson, Ingemar and Briggs, Brandon R and Kanbar, Jad and De Vlaminck, Iwijn and Quake, Stephen R and Dong, Hailiang and Hedlund, Brian P and Swingley, Wesley D and Northern Illinois Univ., DeKalb, IL (United States)
Applied and environmental microbiology, ISSN 0099-2240, 2016, Volume 82, Issue 4, pp. 992 - 1003
Life Sciences & Biomedicine | Microbiology | Biotechnology & Applied Microbiology | Science & Technology | Computational Biology - methods | Hot Springs - microbiology | United States | China | Metagenomics - methods | Genomics - methods | High-Throughput Nucleotide Sequencing - methods | Machine Learning | Genome, Microbial | Usage | Genetic aspects | Research | Candida | Genomics | Genetic algorithms | Proteins | Genomes | Algorithms | Nitrogen | Energy conservation | Artificial intelligence | Index Medicus | BASIC BIOLOGICAL SCIENCES
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6. Full Text Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress
by Gasch, Audrey P and Yu, Feiqiao Brian and Hose, James and Escalante, Leah E and Place, Mike and Bacher, Rhonda and Kanbar, Jad and Ciobanu, Doina and Sandor, Laura and Grigoriev, Igor V and Kendziorski, Christina and Quake, Stephen R and McClean, Megan N and Univ. of California, Berkeley, CA (United States) and Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States) and Univ. of Wisconsin, Madison, WI (United States)
PLoS biology, ISSN 1544-9173, 12/2017, Volume 15, Issue 12, pp. e2004050 - e2004050
Biochemistry & Molecular Biology | Biology | Life Sciences & Biomedicine - Other Topics | Life Sciences & Biomedicine | Science & Technology | Saccharomyces cerevisiae - physiology | Transcription Factors - physiology | Saccharomyces cerevisiae - genetics | Sodium Chloride - pharmacology | Stress, Physiological | Transcriptome | Saccharomyces cerevisiae Proteins - genetics | Transcription Factors - genetics | RNA, Messenger - metabolism | Genetic Variation | Saccharomyces cerevisiae - metabolism | Transcription Factors - metabolism | Sequence Analysis, RNA | Saccharomyces cerevisiae Proteins - metabolism | Saccharomyces cerevisiae Proteins - physiology | RNA sequencing | Genetic aspects | Genetic transcription | Observations | Brewer's yeast | Methods | Bioengineering | Salts | Transcription factors | Baking yeast | Yeast | Authorship | Laboratories | Gene regulation | Fluorescence | Genomes | Kinases | Gene sequencing | Proteins | Heterogeneity | Transcription activation | Cell cycle | Bacteria | Stress response | Bioinformatics | Supervision | Stresses | MAP kinase | Metabolism | Gene expression | Ribonucleic acid--RNA | Environmental stress | Hog1 protein | Variation | Health informatics | Cellular stress response | Index Medicus | BASIC BIOLOGICAL SCIENCES | RNA | Ribonucleic acid
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7. Full Text Novel exons and splice variants in the human antibody heavy chain identified by single cell and single molecule sequencing
by Vollmers, Christopher and Penland, Lolita and Kanbar, Jad N and Quake, Stephen R
PloS one, ISSN 1932-6203, 01/2015, Volume 10, Issue 1, pp. e0117050 - e0117050
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | B-Lymphocytes | RNA Splicing | Sequence Analysis, RNA | Exons | Humans | Immunoglobulin Heavy Chains - genetics | Viral antibodies | Antibodies | Nucleotide sequencing | B cells | DNA sequencing | Bioengineering | Alternative splicing | Immunoglobulins | Lymphocytes B | Constant region | Coding | Isoforms | Chains | Genomes | Chromosomes | Index Medicus
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