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by Bell, D and Berchuck, A and Birrer, M and Chien, J and Cramer, D.W and Dao, F and Dhir, R and Disaia, P and Gabra, H and Glenn, P and Godwin, A.K and Gross, J and Hartmann, L and Huang, M and Huntsman, D.G and Iacocca, M and Imielinski, M and Kalloger, S and Karlan, B.Y and Levine, D.A and Mills, G.B and Morrison, C and Mutch, D and Olvera, N and Orsulic, S and Park, K and Petrelli, N and Rabeno, B and Rader, J.S and Sikic, B.I and Smith-Mccune, K and Sood, A.K and Bowtell, D and Penny, R and Testa, J.R and Chang, K and Dinh, H.H and Drummond, J.A and Fowler, G and Gunaratne, P and Hawes, A.C and Kovar, C.L and Lewis, L.R and Morgan, M.B and Newsham, I.F and Santibanez, J and Reid, J.G and Trevino, L.R and Wu, Y.-Q and Wang, M and Muzny, D.M and Wheeler, D.A and Gibbs, R.A and Getz, G and Lawrence, M.S and Cibulskis, K and Sivachenko, A.Y and Sougnez, C and Voet, D and Wilkinson, J and Bloom, T and Ardlie, K and Fennell, T and Baldwin, J and Gabriel, S and Lander, E.S and Ding, L and Fulton, R.S and Koboldt, D.C and McLellan, M.D and Wylie, T and Walker, J and O'Laughlin, M and Dooling, D.J and Fulton, L and Abbott, R and Dees, N.D and Zhang, Q and Kandoth, C and Wendl, M and Schierding, W and Shen, D and Harris, C.C and Schmidt, H and Kalicki, J and Delehaunty, K.D and Fronick, C.C and Demeter, R and Cook, L and Wallis, J.W and Lin, L and Magrini, V.J and Hodges, J.S and Eldred, J.M and Smith, S.M and Pohl, C.S and Vandin, F and Raphael, B.J and Weinstock, G.M and Mardis, E.R and ... and The Cancer Genome Atlas Research Network and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network
Nature (London), ISSN 1476-4687, 06/2011, Volume 474, Issue 7353, pp. 609 - 615
Journal Article
by Wang, Zehua and Zhang, Min and Guo, Weiwei and Wu, Zhiyuan and Wang, Yue and Xie, Wen and Demchok, John A and Felau, Ina and Kasapi, Melpomeni and Hutter, Carolyn M and Sofia, Heidi J and Tarnuzzer, Roy and Yang, Liming and Zenklusen, Jean C and Zhang, Jiashan (Julia) and Chudamani, Sudha and Naresh, Rashi and Sun, Qiang and Wan, Yunhu and Wu, Ye and Frazer, Scott and Heiman, David I and Kim, Jaegil and Lin, Pei and Meier, Sam and Noble, Michael S and Saksena, Gordon and Voet, Doug and Zhang, Hailei and Bernard, Brady and Chambwe, Nyasha and Dhankani, Varsha and Knijnenburg, Theo and Kramer, Roger and Leinonen, Kalle and Liu, Yuexin and Miller, Michael and Reynolds, Sheila and Shmulevich, Ilya and Thorsson, Vesteinn and Zhang, Wei and Hegde, Apurva M and Ju, Zhenlin and Li, Jun and Liang, Han and Ling, Shiyun and Liu, Wenbin and Lu, Yiling and Mills, Gordon B and Ng, Kwok-Shing and Rao, Arvind and Ryan, Michael and Zhang, Jiexin and Abeshouse, Adam and Chakravarty, Debyani and Chatila, Walid K and Bruijn, Inode and Gao, Jianjiong and Gross, Benjamin E and Heins, Zachary J and Kundra, Ritika and La, Konnor and Ladanyi, Marc and Luna, Augustin and Nissan, Moriah G and Phillips, Sarah M and Sanchez-Vega, Francisco and Sander, Chris and Schultz, Nikolaus and Sumer, S. Onur and Taylor, Barry S and Zhang, Hongxin and Anur, Pavana and Peto, Myron and Spellman, Paul and Benz, Christopher and Stuart, Joshua M and Yau, Christina and Hayes, D. Neil and Parker, Joel S and Wilkerson, Matthew D and Ally, Adrian and Balasundaram, Miruna and Bowlby, Reanne and Brooks, Denise and Carlsen, Rebecca and Chuah, Eric and Dhalla, Noreen and Holt, Robert and Jones, Steven J.M and Kasaian, Katayoon and Lee, Darlene and Ma, Yussanne and Marra, Marco A and Mayo, Michael and Mungall, Andrew J and Mungall, Karen and Robertson, A. Gordon and Sipahimalani, Payal and Tam, Angela and ... and The Cancer Genome Atlas Research Network and Canc Genome Atlas Res Network
Cancer cell, ISSN 1535-6108, 04/2018, Volume 33, Issue 4, pp. 706 - 720.e9
We characterized the epigenetic landscape of genes encoding long noncoding RNAs (lncRNAs) across 6,475 tumors and 455 cancer cell lines. In stark contrast to... 
TCGA pan-cancer | MYC | CIMP | LOC284930 | long noncoding RNA | breast cancer | ENSG00000224271 | EPIC1 | P21 | Oncology | Cancer Research | Cell Biology | Life Sciences & Biomedicine | Science & Technology | Index Medicus
Journal Article
by Sokolov, Artem and Gentles, Andrew J and Burzykowski, Tomasz and Poisson, Laila and Weinstein, John N and Huelsken, Joerg and Omberg, Larsson and Colaprico, Antonio and Czerwińska, Patrycja and Mazurek, Sylwia and Krasnitz, Alex and Godwin, Andrew K and Lazar, Alexander J and Stuart, Joshua M and Hoadley, Katherine A and Laird, Peter W and Noushmehr, Houtan and Wiznerowicz, Maciej and Demchok, John A and Kasapi, Melpomeni and Hutter, Carolyn M and Sofia, Heidi J and Tarnuzzer, Roy and Wang, Zhining and Yang, Liming and Zenklusen, Jean C and Zhang, Jiashan (Julia) and Chudamani, Sudha and Liu, Jia and Naresh, Rashi and Pihl, Todd and Sun, Qiang and Wan, Yunhu and Wu, Ye and Cho, Juok and DeFreitas, Timothy and Frazer, Scott and Getz, Gad and Heiman, David I and Lawrence, Michael S and Lin, Pei and Meier, Sam and Noble, Michael S and Saksena, Gordon and Voet, Doug and Zhang, Hailei and Bernard, Brady and Chambwe, Nyasha and Dhankani, Varsha and Knijnenburg, Theo and Kramer, Roger and Liu, Yuexin and Miller, Michael and Reynolds, Sheila and Thorsson, Vesteinn and Zhang, Wei and Hegde, Apurva M and Ju, Zhenlin and Korkut, Anil and Li, Jun and Ling, Shiyun and Liu, Wenbin and Lu, Yiling and Mills, Gordon B and Abeshouse, Adam and Chakravarty, Debyani and Chatila, Walid K and de Bruijn, Ino and Gao, Jianjiong and Gross, Benjamin E and Heins, Zachary J and Kundra, Ritika and La, Konnor and Ladanyi, Marc and Luna, Augustin and Nissan, Moriah G and Ochoa, Angelica and Sander, Chris and Sun, Yichao and Zhang, Hongxin and Anur, Pavana and Peto, Myron and Spellman, Paul and Benz, Christopher and Yau, Christina and Hayes, D. Neil and Parker, Joel S and Balasundaram, Miruna and Bowlby, Reanne and Brooks, Denise and Carlsen, Rebecca and Dhalla, Noreen and Holt, Robert and Jones, Steven J.M and Kasaian, Katayoon and Lee, Darlene and Ma, Yussanne and Mayo, Michael and Mungall, Andrew J and Mungall, Karen and ... and The Cancer Genome Atlas Research Network and Cancer Genome Atlas Res Network
Cell (Cambridge), ISSN 0092-8674, 04/2018, Volume 173, Issue 2, pp. 338 - 354.e15
Cancer progression involves the gradual loss of a differentiated phenotype and acquisition of progenitor and stem-cell-like features. Here, we provide novel... 
pan-cancer | genomic | stemness | epigenomic | dedifferentiation | cancer stem cells | machine learning | The Cancer Genome Atlas | Biochemistry, Genetics and Molecular Biology(all) | Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Index Medicus
Journal Article
by Huang, Kuan-lin and Mashl, R. Jay and Wu, Yige and Wang, Jiayin and Oh, Clara and Wyczalkowski, Matthew A and Oak, Ninad and Scott, Adam D and Cherniack, Andrew D and Houlahan, Kathleen E and Jayasinghe, Reyka and Wang, Liang-Bo and Zhou, Daniel Cui and Cao, Song and Kim, Young Won and Koire, Amanda and McMichael, Joshua F and Hucthagowder, Vishwanathan and Kim, Tae-Beom and Hahn, Abigail and Wang, Chen and McLellan, Michael D and Al-Mulla, Fahd and Johnson, Kimberly J and Lichtarge, Olivier and Boutros, Paul C and Raphael, Benjamin and Lazar, Alexander J and Zhang, Wei and Wendl, Michael C and Jain, Sanjay and Wheeler, David and Kulkarni, Shashikant and Dipersio, John F and Chen, Ken and Plon, Sharon E and Chen, Feng and Caesar-Johnson, Samantha J and Demchok, John A and Kasapi, Melpomeni and Ferguson, Martin L and Sofia, Heidi J and Tarnuzzer, Roy and Wang, Zhining and Yang, Liming and Zenklusen, Jean C and Chudamani, Sudha and Liu, Jia and Lolla, Laxmi and Naresh, Rashi and Pihl, Todd and Wan, Yunhu and Cho, Juok and DeFreitas, Timothy and Frazer, Scott and Gehlenborg, Nils and Getz, Gad and Lawrence, Michael S and Lin, Pei and Noble, Michael S and Saksena, Gordon and Voet, Doug and Bernard, Brady and Chambwe, Nyasha and Dhankani, Varsha and Knijnenburg, Theo and Kramer, Roger and Miller, Michael and Thorsson, Vesteinn and Ju, Zhenlin and Kanchi, Rupa S and Li, Jun and Liang, Han and Ling, Shiyun and Liu, Wenbin and Lu, Yiling and Mills, Gordon B and Ng, Kwok-Shing and Rao, Arvind and Ryan, Michael and Armenia, Joshua and Chakravarty, Debyani and de Bruijn, Ino and Gao, Jianjiong and Gross, Benjamin E and Heins, Zachary J and La, Konnor and Ladanyi, Marc and Luna, Augustin and Nissan, Moriah G and Ochoa, Angelica and Reznik, Ed and Sanchez-Vega, Francisco and Schultz, Nikolaus and Sun, Yichao and Wang, Jioajiao and Zhang, Hongxin and Anur, Pavana and Peto, Myron and Spellman, Paul and ... and The Cancer Genome Atlas Research Network and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network
Cell (Cambridge), ISSN 0092-8674, 04/2018, Volume 173, Issue 2, pp. 355 - 370.e14
Journal Article