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Methods in Molecular Biology, ISSN 1064-3745, 2017, Volume 1578, pp. 223 - 231
A fundamental task in systems biology is to quantify the contributions of the systems' parts and their interactions. Here I describe a powerful concept and... 
Combinatorial genotypes | Signaling allocation | Subnetwork interactions | Network reconstitution | Quantitative phenotype | Plant Immunity | Systems Biology - methods | Data Interpretation, Statistical | Phenotype | Algorithms | Genotype | Gene Regulatory Networks | Protein Interaction Mapping | Index Medicus
Journal Article
PLoS Genetics, ISSN 1553-7390, 12/2009, Volume 5, Issue 12, pp. e1000772 - e1000772
Journal Article
The Plant Journal, ISSN 0960-7412, 07/2012, Volume 71, Issue 2, pp. 194 - 204
Pattern‐triggered immunity (PTI) is triggered by recognition of elicitors called microbe‐associated molecular patterns (MAMPs). Although immune responses may... 
Arabidopsis thaliana | pattern‐triggered immunity | microbe‐associated molecular pattern | phytosulfokine | receptor‐like protein kinase | PSKR | pattern-triggered immunity | microbe-associated molecular pattern | receptor-like protein kinase | DEFENSE RESPONSES | ARABIDOPSIS-THALIANA | SYSTEMIC ACQUIRED-RESISTANCE | PLANT SCIENCES | RICH REPEAT RECEPTOR | MOLECULAR-PATTERNS | TYROSYLPROTEIN SULFOTRANSFERASE | RECOGNITION RECEPTORS | MESOPHYLL-CELLS | DISEASE RESISTANCE | INNATE IMMUNITY | Arabidopsis - physiology | Plant Diseases - immunology | Arabidopsis - immunology | Plant Roots - genetics | Seedlings - genetics | Seedlings - microbiology | Plant Diseases - microbiology | Peptide Hormones - genetics | Arabidopsis Proteins - metabolism | Peptide Hormones - metabolism | Plant Roots - physiology | Intercellular Signaling Peptides and Proteins - metabolism | Seedlings - immunology | Plants, Genetically Modified | Flagellin - metabolism | Sulfotransferases - metabolism | Plant Proteins - metabolism | Pseudomonas syringae - physiology | Sulfotransferases - genetics | Arabidopsis Proteins - genetics | Intercellular Signaling Peptides and Proteins - genetics | Cell Communication | Gene Expression Regulation, Plant - genetics | Receptors, Cell Surface - metabolism | Plant Immunity - physiology | RNA, Plant - genetics | Plant Roots - microbiology | Plant Leaves - immunology | Arabidopsis - genetics | Arabidopsis - microbiology | Plant Proteins - genetics | DNA, Bacterial - genetics | Plant Leaves - genetics | Seedlings - physiology | Plant Roots - immunology | Signal Transduction - physiology | Mutagenesis, Insertional | Plant Leaves - microbiology | Plant Leaves - physiology | Receptors, Cell Surface - genetics | Enzymes | Anopheles | Messenger RNA | Chorionic gonadotropin | Plant physiology | Analysis | Cholecystokinin | Sulfates | Gene expression | Protein kinases | Plant biology | Signal transduction | Peptides | Plant growth | Index Medicus
Journal Article
Plant Physiology, ISSN 0032-0889, 2/2014, Volume 164, Issue 2, pp. 1093 - 1107
Journal Article
PLoS Genetics, ISSN 1553-7390, 2013, Volume 9, Issue 12, pp. e1004015 - e1004015
Journal Article
The Plant Cell, ISSN 1040-4651, 3/2013, Volume 25, Issue 3, pp. 1143 - 1157
Pathogen-associated molecular pattern (PAMP)-trigged immunity (PTI) is the first defensive line of plant innate immunity and is mediated by pattern recognition... 
Mildews | Proteins | Pathogens | Phenotypes | Receptors | RESEARCH ARTICLES | Innate immunity | Infections | Plants | Genetic mutation | Plant cells | DEFENSE RESPONSES | BIOTROPHIC PATHOGENS | BIOCHEMISTRY & MOLECULAR BIOLOGY | AGROBACTERIUM-MEDIATED TRANSFORMATION | CELL-DEATH | PLANT SCIENCES | CELL BIOLOGY | POWDERY MILDEW RESISTANCE | SALICYLIC-ACID | ETHYLENE-INDUCED SENESCENCE | TETRATRICOPEPTIDE REPEAT | TRANSCRIPTION FACTOR | DISEASE RESISTANCE | Protein Kinases - metabolism | Plant Immunity | Protein Kinases - genetics | Reactive Oxygen Species - metabolism | Genes, Plant | Salicylic Acid - metabolism | Plant Diseases - immunology | Multiprotein Complexes - genetics | Plant Diseases - microbiology | Arabidopsis Proteins - metabolism | Multiprotein Complexes - metabolism | Ascomycota - pathogenicity | Brassinosteroids - metabolism | Cellular Senescence | Gene Expression Regulation, Plant | Apoptosis Regulatory Proteins - genetics | Cell Membrane - metabolism | Ethylenes - pharmacology | Protein-Serine-Threonine Kinases - metabolism | Ascomycota - immunology | Arabidopsis Proteins - genetics | Arabidopsis - drug effects | Disease Resistance | Signal Transduction | Tobacco - metabolism | Protein-Serine-Threonine Kinases - genetics | Apoptosis Regulatory Proteins - metabolism | Arabidopsis - metabolism | Arabidopsis - genetics | Arabidopsis - microbiology | Point Mutation | Phenotype | Tobacco - genetics | Enzyme Activation | Amino Acid Substitution | Arabidopsis thaliana | Physiological aspects | Plant defenses | Research | Phosphotransferases | Health aspects | Index Medicus | s
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 12/2011, Volume 108, Issue 49, pp. 19824 - 19829
Recognition of microbial patterns by host pattern recognition receptors is a key step in immune activation in multicellular eukaryotes. Peptidoglycans (PGNs)... 
Receptors | Bacterial infections | Innate immunity | Ligands | Chitin | Cell membranes | Plants | Gene expression | Immunity | Plant cells | SYSTEM | MOLECULAR-PATTERNS | CELLS | SIGNALING PATHWAYS | MULTIDISCIPLINARY SCIENCES | BINDING-PROTEIN | RECEPTOR-LIKE KINASE | PATTERN-RECOGNITION RECEPTORS | PLANT INNATE IMMUNITY | PLASMA-MEMBRANE | N-ACETYLCHITOOLIGOSACCHARIDE ELICITOR | Peptidoglycan - metabolism | Oligonucleotide Array Sequence Analysis | Staphylococcus aureus - physiology | Plant Diseases - immunology | Transcriptome | Immunoblotting | Plant Diseases - microbiology | Disease Resistance - immunology | Green Fluorescent Proteins - genetics | Phylogeny | Peptidoglycan - immunology | Host-Pathogen Interactions - immunology | Arabidopsis Proteins - metabolism | Bacteria - growth & development | Bacteria - immunology | Plants, Genetically Modified | Gene Expression Regulation, Plant | Plant Diseases - genetics | Disease Resistance - genetics | Protein-Serine-Threonine Kinases - metabolism | Pseudomonas syringae - physiology | Staphylococcus aureus - metabolism | Green Fluorescent Proteins - metabolism | Arabidopsis Proteins - genetics | Bacteria - metabolism | Pseudomonas syringae - metabolism | Protein-Serine-Threonine Kinases - genetics | Pseudomonas syringae - immunology | Reverse Transcriptase Polymerase Chain Reaction | Arabidopsis - metabolism | Arabidopsis - genetics | Arabidopsis - microbiology | Microscopy, Confocal | Staphylococcus aureus - immunology | Mutation | Arabidopsis Proteins - classification | Arabidopsis thaliana | Genetic aspects | Properties | Diseases and pests | Plant immunology | Membrane proteins | Proteins | Genotype & phenotype | Eukaryotes | Flowers & plants | Index Medicus | Biological Sciences
Journal Article
The Plant Journal, ISSN 0960-7412, 09/2011, Volume 67, Issue 6, pp. 1029 - 1041
Arabidopsis thaliana calmodulin binding protein 60g (CBP60g) contributes to production of salicylic acid (SA) in response to recognition of microbe‐associated... 
Arabidopsis thaliana | microarray | defense response | disease resistance | calmodulin | Pseudomonas syringae | DEFENSE RESPONSES | ARABIDOPSIS-THALIANA | CYTOCHROME-P450 MONOOXYGENASE | ESSENTIAL COMPONENT | PSEUDOMONAS-SYRINGAE | SYSTEMIC ACQUIRED-RESISTANCE | CELL-DEATH | PLANT SCIENCES | CAMALEXIN BIOSYNTHESIS | INNATE IMMUNITY | Mitogen-Activated Protein Kinase Kinases - genetics | Salicylic Acid - metabolism | Plant Diseases - microbiology | Pseudomonas syringae - pathogenicity | Arabidopsis Proteins - metabolism | Mitogen-Activated Protein Kinase Kinases - metabolism | Nucleotide Motifs | Flagellin - metabolism | Gene Expression Regulation, Plant | Carboxylic Ester Hydrolases - genetics | Glucans - metabolism | Calmodulin-Binding Proteins - genetics | Promoter Regions, Genetic | Arabidopsis Proteins - genetics | Calmodulin - metabolism | Disease Resistance | Intramolecular Transferases - genetics | Signal Transduction | Calmodulin-Binding Proteins - metabolism | Arabidopsis - metabolism | Arabidopsis - genetics | Host-Pathogen Interactions | Intramolecular Transferases - metabolism | Arabidopsis - microbiology | Mitogen-Activated Protein Kinases - genetics | Mutation | Carboxylic Ester Hydrolases - metabolism | Mitogen-Activated Protein Kinases - metabolism | Phenols | Gene expression | Analysis | Calmodulin | Protein binding | Proteins | Plant biology | Molecular biology | Plant resistance | Index Medicus
Journal Article
PLoS Genetics, ISSN 1553-7390, 05/2017, Volume 13, Issue 5, pp. e1006639 - e1006639
Plant immunity protects plants from numerous potentially pathogenic microbes. The biological network that controls plant inducible immunity must function... 
REGRESSION | RESPONSES | ETHYLENE | SALICYLIC-ACID | GENE | GENETICS & HEREDITY | PLANTS | MECHANISMS | SELECTION | JASMONIC ACID | EXPRESSION | Carboxylic Ester Hydrolases - immunology | Salicylic Acid - metabolism | Oxylipins - immunology | Plant Diseases - immunology | Arabidopsis - immunology | Transcriptome - immunology | Ethylenes - metabolism | Host-Pathogen Interactions - immunology | Ethylenes - immunology | Salicylic Acid - immunology | Cyclopentanes - immunology | Flagellin - genetics | Gene Expression Regulation, Plant | Plant Diseases - genetics | Carboxylic Ester Hydrolases - genetics | Gene Regulatory Networks - immunology | Arabidopsis Proteins - genetics | Flagellin - immunology | Plant Immunity - genetics | Signal Transduction | Transcriptome - genetics | Arabidopsis Proteins - immunology | Arabidopsis - genetics | Oxylipins - metabolism | Host-Pathogen Interactions - genetics | Cyclopentanes - metabolism | Arabidopsis | Phytoalexin | Analysis | Ethylene | Genetic aspects | Research | Jasmonates | Networks | Ontology | Transcription | Laboratories | Genomics | Colleges & universities | Flagellin | Genomes | Biology | Plants (organisms) | Immunity | Consortia | Signal transduction | Biological effects | Scholarships & fellowships | Charitable foundations | Buffers | Bioinformatics | Jasmonic acid | Salicylic acid | Pathogens | Plant protection | Gene expression | Resilience | Computer science | Effectors | Regulatory mechanisms (biology) | Genetic engineering | Internet | Mutation | Dismantling | Index Medicus
Journal Article
PLoS Pathogens, ISSN 1553-7366, 02/2009, Volume 5, Issue 2, pp. e1000301 - e1000301