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1. Full Text Effects of correlated parameters and uncertainty in electronic-structure-based chemical kinetic modelling
by Sutton, Jonathan E and Guo, Wei and Katsoulakis, Markos A and Vlachos, Dionisios G and Energy Frontier Research Centers (EFRC) (United States). Catalysis Center for Energy Innovation (CCEI)
Nature Chemistry, ISSN 1755-4330, 04/2016, Volume 8, Issue 4, pp. 331 - 337
Kinetic models based on first principles are becoming common place in heterogeneous catalysis because of their ability to interpret experimental data, identify... 
DESIGN | DFT | GAS SHIFT REACTION | MECHANISM | PLATINUM | ETHANOL | STRUCTURE-SENSITIVITY | DENSITY-FUNCTIONAL THEORY | CHEMISTRY, MULTIDISCIPLINARY | CATALYSTS | SURFACE-CHEMISTRY | catalysis (homogeneous), catalysis (heterogeneous), biofuels (including algae and biomass), bio-inspired, hydrogen and fuel cells, materials and chemistry by design, synthesis (novel materials), synthesis (self-assembly), synthesis (scalable processing)
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2. Full Text Long‐term outcomes in oral cavity squamous cell carcinoma with adjuvant and salvage radiotherapy after surgery
by Katsoulakis, Evangelia and Leeman, Jonathan E and Lok, Benjamin H and Shi, Weiji and Zhang, Zhigang and Tsai, Jillian C and McBride, Sean M and Sherman, Eric J and Cohen, Marc and Wong, Richard and Ganly, Ian and Lee, Nancy Y and Riaz, Nadeem
The Laryngoscope, ISSN 0023-852X, 11/2018, Volume 128, Issue 11, pp. 2539 - 2545
Objective Early‐stage oral cavity squamous cell carcinoma (OCSCC) represents a heterogeneous group of patients, and locoregional recurrence rates are as high... 
salvage radiation | Adjuvant radiation | oral cavity squamous cell carcinoma | SURVIVAL | MEDICINE, RESEARCH & EXPERIMENTAL | POSTOPERATIVE RADIOTHERAPY | NECK DISSECTION | FOLLOW-UP | RISK | STAGE-I | RADIATION | TONGUE | OTORHINOLARYNGOLOGY | LOCALLY ADVANCED HEAD | CANCER STATISTICS | Carcinoma, Squamous Cell - pathology | Humans | Middle Aged | Neoplasm Recurrence, Local | Carcinoma, Squamous Cell - surgery | Male | Survival Rate | Treatment Outcome | Carcinoma, Squamous Cell - radiotherapy | Mouth Neoplasms - surgery | Mouth Neoplasms - pathology | Adult | Female | Mouth Neoplasms - radiotherapy | Aged | Neoplasm Staging | Radiotherapy, Adjuvant | Salvage Therapy - methods | Radiotherapy | Squamous cell carcinoma | Radiation | adjuvant radiation
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3. Full Text Salvage Radiotherapy Leads to Worse Overall Survival Compared to Adjuvant Radiotherapy in Oral Cavity Carcinoma: A Matched Analysis
by Katsoulakis, E and Leeman, J.E and Shi, W and Zhigang, Z and Morris, L and Sherman, E and Cohen, M and Tsai, C.J and McBride, S and Ganly, I and Lee, N and Riaz, N
International Journal of Radiation Oncology, Biology, Physics, ISSN 0360-3016, 10/2017, Volume 99, Issue 2, pp. E346 - E347
Comparative analysis | Radiotherapy | Patient outcomes | Cancer
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4. Full Text Prognostic Factors Associated With Survival In Melanoma Of The Vulva And Vagina
by McCool, J.K and Anderson, B and Guirguis, A and Katsoulakis, E and Parikh, K.J and Ashamalla, H
International Journal of Radiation Oncology, Biology, Physics, ISSN 0360-3016, 2016, Volume 96, Issue 2, pp. E321 - E321
Radiology | Hematology, Oncology and Palliative Medicine | Prognosis | Melanoma
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5. Full Text Parametrizing coarse grained models for molecular systems at equilibrium
by Kalligiannaki, E and Chazirakis, A and Tsourtis, A and Katsoulakis, M.A and Plecháč, P and Harmandaris, V and Univ. of Delaware, Newark, DE (United States)
The European Physical Journal Special Topics, ISSN 1951-6355, 10/2016, Volume 225, Issue 8, pp. 1347 - 1372
Hierarchical coarse graining of atomistic molecular systems at equilibrium has been an intensive research topic over the last few decades. In this work we (a)... 
Condensed Matter Physics | Measurement Science and Instrumentation | Materials Science, general | Classical and Continuum Physics | Atomic, Molecular, Optical and Plasma Physics | Physics, general | Physics | STOCHASTIC LATTICE SYSTEMS | DYNAMICS SIMULATIONS | POLYSTYRENE | REDUCTION | PHYSICS, MULTIDISCIPLINARY | REPRESENTATION | FORCE-FIELD | COMPUTER-SIMULATIONS | POTENTIALS | SCHEMES | LIQUIDS | Methane | Models
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6. Full Text Causality and Bayesian Network PDEs for multiscale representations of porous media
by Um, Kimoon and Hall, Eric J and Katsoulakis, Markos A and Tartakovsky, Daniel M
Journal of Computational Physics, ISSN 0021-9991, 10/2019, Volume 394, Issue C, pp. 658 - 678
Microscopic (pore-scale) properties of porous media affect and often determine their macroscopic (continuum- or Darcy-scale) counterparts. Understanding the... 
Bayesian Networks | Porous media | Global sensitivity analysis | Mutual Information | Causality | Energy storage | INFORMATION | DIVERGENCES | PHYSICS, MATHEMATICAL | GLOBAL SENSITIVITY-ANALYSIS | COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS | MEASURING UNCERTAINTY IMPORTANCE | ENTROPY | Correlation | Uncertainty | Sensitivity analysis | Transport phenomena | Statistical analysis | Workflow | Macroscopic models | Probability density functions | Design engineering | Bayesian analysis | Geometric constraints | Material properties
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7. Full Text The geometry of generalized force matching and related information metrics in coarse-graining of molecular systems
by Kalligiannaki, Evangelia and Harmandaris, Vagelis and Katsoulakis, Markos A and Plecháč, Petr
Journal of Chemical Physics, ISSN 0021-9606, 08/2015, Volume 143, Issue 8, p. 084105
Using the probabilistic language of conditional expectations, we reformulate the force matching method for coarse-graining of molecular systems as a projection... 
POLYSTYRENE | ROUSE | REDUCTION | PHYSICS, ATOMIC, MOLECULAR & CHEMICAL | DYNAMICS | CHEMISTRY, PHYSICAL | BACK | SIMULATION | FREE-ENERGY | POLYMER MELTS | Monte Carlo Method | Entropy | Molecular Dynamics Simulation | Matching | Granulation | Optimization
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8. Full Text Five-Year Outcomes of High-Dose Single-Fraction Spinal Stereotactic Radiosurgery
by Moussazadeh, Nelson, MD and Lis, Eric, MD and Katsoulakis, Evangelia, MD and Kahn, Sweena, MS and Svoboda, Marek, BA and DiStefano, Natalie M., BA and McLaughlin, Lily, BS and Bilsky, Mark H., MD and Yamada, Yoshiya, MD and Laufer, Ilya, MD
International Journal of Radiation Oncology, Biology, Physics, ISSN 0360-3016, 2015, Volume 93, Issue 2, pp. 361 - 367
Purpose To characterize local tumor control and toxicity risk in very long-term survivors (>5 years) after high-dose spinal image guided, intensity modulated... 
Radiology | Hematology, Oncology and Palliative Medicine | VERTEBRAL COMPRESSION FRACTURE | MANAGEMENT | LOCAL DISEASE-CONTROL | ONCOLOGY | CHORDOMAS | SARCOMAS | METASTASES CLINICAL ARTICLE | BODY RADIATION-THERAPY | TOXICITY | SEPARATION SURGERY | RADIOTHERAPY | RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING | Follow-Up Studies | Humans | Middle Aged | Radiation Tolerance | Spinal Fractures - etiology | Male | Radiosurgery - adverse effects | Radiotherapy, Intensity-Modulated - adverse effects | Time Factors | Treatment Failure | Adult | Female | Retrospective Studies | Radiosurgery - methods | Radiotherapy, Image-Guided - adverse effects | Radiotherapy Dosage | Radiotherapy, Intensity-Modulated - methods | Neoplasm Recurrence, Local | Survivors | Fractures, Spontaneous - etiology | Disease Progression | Spinal Neoplasms - secondary | Radiotherapy, Image-Guided - methods | Aged | Radiosurgery - mortality | Retreatment - methods | Spinal Neoplasms - surgery | Sects | Analysis | Surgery | Radiosurgery | Index Medicus | SURGERY | PATIENTS | DISEASE INCIDENCE | NEOPLASMS | SAFETY | METASTASES | POPULATIONS | RADIATION DOSES | CEMENTS | SKELETON | RADIOLOGY AND NUCLEAR MEDICINE | FRACTURES
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9. Full Text Path-space variational inference for non-equilibrium coarse-grained systems
by Harmandaris, Vagelis and Kalligiannaki, Evangelia and Katsoulakis, Markos and Plecháč, Petr
Journal of Computational Physics, ISSN 0021-9991, 06/2016, Volume 314, Issue C, pp. 355 - 383
In this paper we discuss information-theoretic tools for obtaining optimized coarse-grained molecular models for both equilibrium and non-equilibrium molecular... 
Coarse graining | Machine learning | Time series | Information metrics | Variational inference | Langevin dynamics | Stochastic optimization | Non-equilibrium | PHYSICS, MATHEMATICAL | MELTS | DYNAMICS SIMULATIONS | POLYSTYRENE | COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS | MODELS | STOCHASTIC-PROCESSES | DIFFUSION | SCHEMES | Thermodynamics | Analysis | Stochastic processes | Parametrization | Correlation | Dynamics | Inference | Dynamical systems | Joints | Coarsening | Mathematics - Numerical Analysis
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10. Full Text A Detailed Dosimetric Analysis of Spinal Cord Tolerance in High-Dose Spine Radiosurgery
by Katsoulakis, Evangelia and Jackson, Andrew and Cox, Brett and Lovelock, Michael and Yamada, Yoshiya
International Journal of Radiation Oncology, Biology, Physics, ISSN 0360-3016, 11/2017, Volume 99, Issue 3, pp. 598 - 607
Dose-volume tolerance of the spinal cord (SC) in spinal stereotactic radiosurgery (SRS) is difficult to define because radiation myelitis rates are low, and... 
STEREOTACTIC RADIOSURGERY | INDUCED MYELOPATHY | ONCOLOGY | BODY RADIATION-THERAPY | RADIOTHERAPY | RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING | LESIONS | Radiotherapy Dosage | Humans | Middle Aged | Radiation Tolerance | Spinal Cord - diagnostic imaging | Spinal Cord - radiation effects | Male | Myelitis - etiology | Radiosurgery - adverse effects | Young Adult | Magnetic Resonance Imaging | Maximum Tolerated Dose | Myelitis - diagnostic imaging | Aged, 80 and over | Adult | Female | Aged | Radiosurgery - methods | Databases, Factual | Surgery | Analysis | Radiosurgery | Radiation
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11. The impact of histology and delivered dose on local control of spinal metastases treated with stereotactic radiosurgery
by Yamada, Yoshiya and Katsoulakis, Evangelia and Laufer, Ilya and Lovelock, Michael and Barzilai, Ori and McLaughlin, Lily A and Zhang, Zhigang and Schmitt, Adam M and Higginson, Daniel S and Lis, Eric and Zelefsky, Michael J and Mechalakos, James and Bilsky, Mark H
Neurosurgical Focus, ISSN 1092-0684, 2017, Volume 42, Issue 1, p. E6
OBJECTIVE An analysis of factors contributing to durable radiographic control of spinal metastases was undertaken, drawing from a large single-institution... 
Stereotactic radiosurgery | Local control | Spinal metastases | SURGERY | COMPETING RISK | local control | INTENSITY-MODULATED RADIOTHERAPY | spinal metastases | TOXICITY | CANCER | CLINICAL NEUROLOGY | stereotactic radiosurgery | TRIAL | MELANOMA | CORD COMPRESSION | PATIENT | OUTCOMES | Spinal Neoplasms - diagnostic imaging | Humans | Male | Tomography, X-Ray Computed | Neoplasm Recurrence, Local - surgery | Analysis of Variance | Neoplasm Recurrence, Local - diagnostic imaging | Treatment Failure | Survival Analysis | Female | Radiosurgery - methods | Dose-Response Relationship, Radiation | Spinal Neoplasms - surgery | Cohort Studies
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12. Full Text The Dosimetric Effects of Photon Energy on the Quality of Volumetric Modulated Arc Therapy (VMAT) for Lung SBRT
by Tchelebi, L and Chen, D and Ikoro, N and Guirguis, A and Katsoulakis, E and Ashamalla, H
International Journal of Radiation Oncology, Biology, Physics, ISSN 0360-3016, 2015, Volume 93, Issue 3, pp. E429 - E430
Radiology | Hematology, Oncology and Palliative Medicine
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13. Full Text Mechanistic principles of nanoparticle evolution to zeolite crystals
by McCormick, Alon V and He, Chuan and Dong, Jingshan and Davis, Tracy M and Katsoulakis, Markos A and Penn, R. Lee and Ramanan, Harikrishnan and Drews, Timothy O and Tsapatsis, Michael and Schnablegger, Heimo and Kokkoli, Efrosini
Nature Materials, ISSN 1476-1122, 05/2006, Volume 5, Issue 5, pp. 400 - 408
Precursor nanoparticles that form spontaneously on hydrolysis of tetraethylorthosilicate in aqueous solutions of tetrapropylammonium (TPA) hydroxide evolve to... 
CRYSTALLIZATION | PHYSICS, CONDENSED MATTER | PHYSICS, APPLIED | MATERIALS SCIENCE, MULTIDISCIPLINARY | CHEMISTRY, PHYSICAL | X-RAY-SCATTERING | MOLECULAR-SIEVES | TPA-SILICALITE-1 | IN-SITU OBSERVATION | ELEVATED-TEMPERATURES | MFI ZEOLITE | GROWTH | NUCLEATION | CLEAR-SOLUTION | Nanoparticles | Materials science | Aqueous solutions | Crystals
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14. Full Text Uncertainty quantification for generalized Langevin dynamics
by Hall, Eric J and Katsoulakis, Markos A and Rey-Bellet, Luc and Univ. of Massachusetts, Amherst, MA (United States). Dept. of Mathematics and Statistics
The Journal of Chemical Physics, ISSN 0021-9606, 12/2016, Volume 145, Issue 22, p. 224108
We present efficient finite difference estimators for goal-oriented sensitivity indices with applications to the generalized Langevin equation (GLE). In... 
EXPONENTIAL-SUMS | APPROXIMATION | SENSITIVITY-ANALYSIS | PHYSICS, ATOMIC, MOLECULAR & CHEMICAL | CHEMISTRY, PHYSICAL | EQUATION | STOCHASTIC-SYSTEMS | CONVERGENCE-RATES | Parameter estimation | Sensitivity analysis | Mathematical analysis | Dynamics | Likelihood ratio | Parameter sensitivity | Coupling | Estimators | Variance | Finite difference method | MATHEMATICS AND COMPUTING
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15. Full Text Patterns of Care and Outcomes for Early Stage (cT1-T2N0M0) Squamous Cell Carcinoma of the Anus
by Youssef, I and Osborn, V.W and Katsoulakis, E and Kavi, A and Choi, K.N and Safdieh, J and Schreiber, D
International Journal of Radiation Oncology, Biology, Physics, ISSN 0360-3016, 11/2018, Volume 102, Issue 3, pp. e13 - e14
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16. Full Text Laryngeal Preservation Strategy for Locally Advanced Laryngeal Cancer in the Era of IMRT
by Rao, S.S and Hu, M and Katsoulakis, E and Jaffrey, S and Riaz, N and Lee, N.Y
International Journal of Radiation Oncology, Biology, Physics, ISSN 0360-3016, 2014, Volume 88, Issue 2, pp. 474 - 475
Radiology | Hematology, Oncology and Palliative Medicine
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17. Full Text Stereotactic Body Radiotherapy in the Treatment of Spinal Metastases
by Katsoulakis, Evangelia, MD and Kumar, Kiran, MD and Laufer, Ilya, MD and Yamada, Yoshiya, MD, FRCPC
Seminars in Radiation Oncology, ISSN 1053-4296, 2017, Volume 27, Issue 3, pp. 209 - 217
Patients with metastatic disease including polymetastatic, oligometastatic, and oligorecurrent spinal lesions have extended life expectancy secondary to... 
Radiology | Hematology, Oncology and Palliative Medicine | SINGLE-SESSION | OUTCOME ANALYSIS | LOCAL DISEASE-CONTROL | ONCOLOGY | REIRRADIATION | CLINICAL ARTICLE | CONSENSUS | CORD COMPRESSION | RADIOSURGERY | EXPERIENCE | RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING | RADIATION-THERAPY | Spinal Neoplasms - secondary | Humans | Radiation Tolerance | Radiosurgery | Dose Fractionation | Radiotherapy, Image-Guided | Spinal Neoplasms - radiotherapy | Care and treatment | Metastasis | Health aspects | Radiation | Index Medicus
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18. Full Text Brachytherapy Boost for Gleason (GS) 7 Intermediate-Risk Prostate Adenocarcinoma Yields Excellent Biochemical Control and May Eliminate Therapeutic Benefit of Hormonal Therapy
by Shasha, D and Nabhani, T and Mourad, W.F and Patel, S and Lukens, J.N and Gámez, M and Katsoulakis, E and Patel, R and Concert, C and Ryniak, M and Shourbaji, R.A and Shah, N and Santoro, J and Ambrose, R and Dolan, J and Woode, R and Goluboff, E and Dinlenc, C and Salant, R.L and Harrison, L.B
International Journal of Radiation Oncology, Biology, Physics, ISSN 0360-3016, 2014, Volume 90, Issue 1, pp. S427 - S428
Radiology | Hematology, Oncology and Palliative Medicine
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19. Full Text Androgen Deprivation Therapy (ADT) With 75.6-81 Gy Conformal External Beam Irradiation (EBRT) Improves Biochemical Progression-Free Survival (BPFS) in Gleason Score 7 (GS7) Intermediate-Risk Prostate Cancer
by Mourad, W.F and Nabhani, T and Patel, S and Concert, C and Ryniak, M and Katsoulakis, E and Patel, R and Gámez, M and Lukens, J.N and Shourbaji, R.A and Santoro, J and Dolan, J and Woode, R and Goluboff, E and Salant, R and Dinlenc, C and Kabarriti, R and Young, R and Harrison, L.B and Shasha, D
International Journal of Radiation Oncology, Biology, Physics, ISSN 0360-3016, 2014, Volume 90, Issue 1, pp. S422 - S422
Radiology | Hematology, Oncology and Palliative Medicine
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20. Full Text Dose-Escalated Postprostatectomy Salvage Radiation Therapy: Is 81 Gy Safe and Effective?
by Mourad, W.F and Patel, S and Kabarriti, R and Young, R and Gámez, M and Lukens, J.N and Patel, R and Concert, C and Ryniak, M and Shourbaji, R.A and Nabhani, T and Katsoulakis, E and Santoro, J and Salant, R and Dinlenc, C and Goluboff, E and Dolan, J and Woode, R and Harrison, L.B and Shasha, D
International Journal of Radiation Oncology, Biology, Physics, ISSN 0360-3016, 2014, Volume 90, Issue 1, pp. S421 - S421
Radiology | Hematology, Oncology and Palliative Medicine
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