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Bioinformatics, ISSN 1367-4803, 01/2019, Volume 35, Issue 1, pp. 137 - 139
Abstract Summary Benchmark studies are widely used to compare and evaluate tools developed for answering various biological questions. Despite the popularity... 
Journal Article
Genome Biology, ISSN 1474-7596, 06/2019, Volume 20, Issue 1, pp. 118 - 21
In high-throughput studies, hundreds to millions of hypotheses are typically tested. Statistical methods that control the false discovery rate (FDR) have... 
ScRNA-seq | GWAS | RNA-seq | Multiple hypothesis testing | ChIP-seq | False discovery rate | Gene set analysis | Microbiome | Microbiota | Computer applications | Biology | Genomes | Gene expression | Bioinformatics | Methods | Power | Generalized linear models
Journal Article
by Lawrence, Michael S and Sougnez, Carrie and Lichtenstein, Lee and Cibulskis, Kristian and Lander, Eric and Gabriel, Stacey B and Getz, Gad and Ally, Adrian and Balasundaram, Miruna and Birol, Inanc and Bowlby, Reanne and Brooks, Denise and Butterfield, Yaron S. N and Carlsen, Rebecca and Cheng, Dean and Chu, Andy and Dhalla, Noreen and Guin, Ranabir and Holt, Robert A and Jones, Steven J.M and Lee, Darlene and Li, Haiyan I and Marra, Marco A and Mayo, Michael and Moore, Richard A and Mungall, Andrew J and Robertson, A. Gordon and Schein, Jacqueline E and Sipahimalani, Payal and Tam, Angela and Thiessen, Nina and Wong, Tina and Protopopov, Alexei and Santoso, Netty and Lee, Semin and Parfenov, Michael and Zhang, Jianhua and Mahadeshwar, Harshad S and Tang, Jiabin and Ren, Xiaojia and Seth, Sahil and Haseley, Psalm and Zeng, Dong and Yang, Lixing and Xu, Andrew W and Song, Xingzhi and Pantazi, Angeliki and Bristow, Christopher A and Hadjipanayis, Angela and Seidman, Jonathan and Chin, Lynda and Park, Peter J and Kucherlapati, Raju and Akbani, Rehan and Casasent, Tod and Liu, Wenbin and Lu, Yiling and Mills, Gordon and Motter, Thomas and Weinstein, John and Diao, Lixia and Wang, Jing and Hong Fan, You and Liu, Jinze and Wang, Kai and Auman, J. Todd and Balu, Saianand and Bodenheimer, Thomas and Buda, Elizabeth and Hayes, D. Neil and Hoadley, Katherine A and Hoyle, Alan P and Jefferys, Stuart R and Jones, Corbin D and Kimes, Patrick K and Liu, Yufeng and Marron, J.S and Meng, Shaowu and Mieczkowski, Piotr A and Mose, Lisle E and Parker, Joel S and Perou, Charles M and Prins, Jan F and Roach, Jeffrey and Shi, Yan and Simons, Janae V and Singh, Darshan and Soloway, Matthew G and Tan, Donghui and Veluvolu, Umadevi and Walter, Vonn and Waring, Scot and Wilkerson, Matthew D and Wu, Junyuan and Zhao, Ni and Cherniack, Andrew D and Hammerman, Peter S and Tward, Aaron D and Pedamallu, Chandra Sekhar and Saksena, Gordon and ... and Canc Genome Atlas Network and Cancer Genome Atlas Network and The Cancer Genome Atlas Network
Nature, ISSN 0028-0836, 01/2015, Volume 517, Issue 7536, pp. 576 - 582
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 10/2014, Volume 111, Issue 43, pp. 15544 - 15549
Journal Article
by Collisson, Eric A and Campbell, Joshua D and Brooks, Angela N and Berger, Alice H and Lee, William and Chmielecki, Juliann and Beer, David G and Cope, Leslie and Creighton, Chad J and Danilova, Ludmila and Ding, Li and Getz, Gad and Hammerman, Peter S and Hayes, D. Neil and Hernandez, Bryan and Herman, James G and Heymach, John V and Jurisica, Igor and Kucherlapati, Raju and Kwiatkowski, David and Ladanyi, Marc and Robertson, Gordon and Schultz, Nikolaus and Shen, Ronglai and Sinha, Rileen and Sougnez, Carrie and Tsao, Ming-Sound and Travis, William D and Weinstein, John N and Wigle, Dennis A and Wilkerson, Matthew D and Chu, Andy and Cherniack, Andrew D and Hadjipanayis, Angela and Rosenberg, Mara and Weisenberger, Daniel J and Laird, Peter W and Radenbaugh, Amie and Ma, Singer and Stuart, Joshua M and Byers, Lauren Averett and Baylin, Stephen B and Govindan, Ramaswamy and Meyerson, Matthew and Gabriel, Stacey B and Cibulskis, Kristian and Kim, Jaegil and Stewart, Chip and Lichtenstein, Lee and Lander, Eric S and Lawrence, Michael S and Getz, E and Fulton, Robert and Fulton, Lucinda L and McLellan, Michael D and Wilson, Richard K and Ye, Kai and Fronick, Catrina C and Maher, Christopher A and Miller, Christopher A and Wendl, Michael C and Cabanski, Christopher and Mardis, Elaine and Wheeler, David and Balasundaram, Miruna and Butterfield, Yaron S. N and Carlsen, Rebecca and Chuah, Eric and Dhalla, Noreen and Guin, Ranabir and Hirst, Carrie and Lee, Darlene and Li, Haiyan I and Mayo, Michael and Moore, Richard A and Mungall, Andrew J and Schein, Jacqueline E and Sipahimalani, Payal and Tam, Angela and Varhol, Richard and Robertson, A. Gordon and Wye, Natasja and Thiessen, Nina and Holt, Robert A and Jones, Steven J.M and Marra, Marco A and Imielinski, Marcin and Onofrio, Robert C and Hodis, Eran and Zack, Travis and Helman, Elena and Pedamallu, Chandra Sekhar and Mesirov, Jill and Saksena, Gordon and Schumacher, Steven E and Carter, Scott L and Garraway, Levi and Beroukhim, Rameen and Lee, Semin and Mahadeshwar, Harshad S and ...
Nature, ISSN 0028-0836, 2014, Volume 511, Issue 7511, pp. 543 - 550
Journal Article
by Robertson, A. Gordon and Shih, Juliann and Yau, Christina and Gibb, Ewan A and Oba, Junna and Mungall, Andrew J and Mungall, Karen L and Hess, Julian M and Uzunangelov, Vladislav and Walter, Vonn and Danilova, Ludmila and Lichtenberg, Tara M and Kucherlapati, Melanie and Kucherlapati, Raju and Kimes, Patrick K and Tang, Ming and Tang, Jiabin and Penson, Alexander and Babur, Ozgun and Akbani, Rehan and Bristow, Christopher A and Hoadley, Katherine A and Iype, Lisa and Chang, Matthew T and Abdel-Rahman, Mohamed H and Ally, Adrian and Auman, J. Todd and Balasundaram, Miruna and Balu, Saianand and Benz, Christopher and Beroukhim, Rameen and Birol, Inanc and Bodenheimer, Tom and Bowen, Jay and Bowlby, Reanne and Brooks, Denise and Carlsen, Rebecca and Cebulla, Colleen M and Cherniack, Andrew D and Chin, Lynda and Cho, Juok and Chuah, Eric and Chudamani, Sudha and Cibulskis, Carrie and Cibulskis, Kristian and Cope, Leslie and Coupland, Sarah E and Defreitas, Timothy and Demchok, John A and Desjardins, Laurence and Dhalla, Noreen and Esmaeli, Bita and Felau, Ina and Ferguson, Martin L and Frazer, Scott and Gabriel, Stacey B and Gastier-Foster, Julie M and Gehlenborg, Nils and Gerken, Mark and Gershenwald, Jeffrey E and Getz, Gad and Griewank, Klaus G and Grimm, Elizabeth A and Hayes, D. Neil and Hegde, Apurva M and Heiman, David I and Helsel, Carmen and Hobensack, Shital and Holt, Robert A and Hoyle, Alan P and Hu, Xin and Hutter, Carolyn M and Jager, Martine J and Jefferys, Stuart R and Jones, Corbin D and Jones, Steven J.M and Kandoth, Cyriac and Kasaian, Katayoon and Kim, Jaegil and Lander, Eric and Lawrence, Michael S and Lazar, Alexander J and Lee, Semin and Leraas, Kristen M and Lin, Pei and Liu, Jia and Liu, Wenbin and Lolla, Laxmi and Lu, Yiling and Ma, Yussanne and Mahadeshwar, Harshad S and Mariani, Odette and Marra, Marco A and Mayo, Michael and Meier, Sam and Meng, Shaowu and Meyerson, Matthew and Mieczkowski, Piotr A and Mills, Gordon B and Moore, Richard A and ... and TCGA Res Network and TCGA Research Network
Cancer Cell, ISSN 1535-6108, 08/2017, Volume 32, Issue 2, pp. 204 - 220.e15
Journal Article
Statistical Analysis and Data Mining: The ASA Data Science Journal, ISSN 1932-1864, 04/2016, Volume 9, Issue 2, pp. 89 - 105
Journal Article
Gastroenterology, ISSN 0016-5085, 01/2018, Volume 154, Issue 1, pp. S35 - S35
Journal Article
Biometrics, ISSN 0006-341X, 09/2017, Volume 73, Issue 3, pp. 811 - 821
Cluster analysis has proved to be an invaluable tool for the exploratory and unsupervised analysis of high-dimensional datasets. Among methods for clustering,... 
Hypothesis testing | Multiple correction | High‐dimension | Unsupervised learning | High-dimension | RNA-SEQ | SUBTYPES | BIOLOGY | MATHEMATICAL & COMPUTATIONAL BIOLOGY | CLASSIFICATION | STATISTICS & PROBABILITY | SAMPLE-SIZE DATA | Gene expression | Analysis | Genomics
Journal Article