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1. Full Text A comparative encyclopedia of DNA elements in the mouse genome
by Yue, Feng and Cheng, Yong and Breschi, Alessandra and Vierstra, Jeff and Wu, Weisheng and Ryba, Tyrone and Sandstrom, Richard and Ma, Zhihai and Davis, Carrie and Pope, Benjamin D and Shen, Yin and Pervouchine, Dmitri D and Djebali, Sarah and Thurman, Robert E and Kaul, Rajinder and Rynes, Eric and Kirilusha, Anthony and Marinov, Georgi K and Williams, Brian A and Trout, Diane and Amrhein, Henry and Fisher-Aylor, Katherine and Antoshechkin, Igor and DeSalvo, Gilberto and See, Lei-Hoon and Fastuca, Meagan and Drenkow, Jorg and Zaleski, Chris and Dobin, Alex and Prieto, Pablo and Lagarde, Julien and Bussotti, Giovanni and Tanzer, Andrea and Denas, Olgert and Li, Kanwei and Bender, M.A and Zhang, Miaohua and Byron, Rachel and Groudine, Mark T and McCleary, David and Pham, Long and Ye, Zhen and Kuan, Samantha and Edsall, Lee and Wu, Yi-Chieh and Rasmussen, Matthew D and Bansal, Mukul S and Kellis, Manolis and Keller, Cheryl A and Morrissey, Christapher S and Mishra, Tejaswini and Jain, Deepti and Dogan, Nergiz and Harris, Robert S and Cayting, Philip and Kawli, Trupti and Boyle, Alan P and Euskirchen, Ghia and Kundaje, Anshul and Lin, Shin and Lin, Yiing and Jansen, Camden and Malladi, Venkat S and Cline, Melissa S and Erickson, Drew T and Kirkup, Vanessa M and Learned, Katrina and Sloan, Cricket A and Rosenbloom, Kate R and De Sousa, Beatriz Lacerda and Beal, Kathryn and Pignatelli, Miguel and Flicek, Paul and Lian, Jin and Kahveci, Tamer and Lee, Dongwon and Kent, W. James and Santos, Miguel Ramalho and Herrero, Javier and Notredame, Cedric and Johnson, Audra and Vong, Shinny and Lee, Kristen and Bates, Daniel and Neri, Fidencio and Diegel, Morgan and Canfield, Theresa and Sabo, Peter J and Wilken, Matthew S and Reh, Thomas A and Giste, Erika and Shafer, Anthony and Kutyavin, Tanya and Haugen, Eric and Dunn, Douglas and Reynolds, Alex P and Neph, Shane and Humbert, Richard and Hansen, R. Scott and De Bruijn, Marella and ... and Mouse ENCODE Consortium and The Mouse ENCODE Consortium
Nature, ISSN 0028-0836, 11/2014, Volume 515, Issue 7527, pp. 355 - 364
The laboratory mouse shares the majority of its protein-coding genes with humans, making it the premier model organism in biomedical research, yet the two... 
TRANSCRIPTION FACTOR-BINDING | GENE | LANDSCAPE | PERVASIVE TRANSCRIPTION | MULTIDISCIPLINARY SCIENCES | EMBRYONIC STEM-CELLS | ENCODE DATA | TRANSPOSABLE ELEMENTS | EVOLUTIONARY DYNAMICS | CHROMATIN INTERACTIONS | EXPRESSION | Human beings | Genetic research | Mice | Genetic aspects | Genomes | Man | Comparative analysis | Transcription factors | Genomics | Rodents | Mammals | Gene expression | Deoxyribonucleic acid--DNA | Mouse genome | Epigenomics
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2. Full Text ENCODE Data in the UCSC Genome Browser: Year 5 update
by Rosenbloom, Kate R and Sloan, Cricket A and Malladi, Venkat S and Dreszer, Timothy R and Learned, Katrina and Kirkup, Vanessa M and Wong, Matthew C and Maddren, Morgan and Fang, Ruihua and Heitner, Steven G and Lee, Brian T and Barber, Galt P and Harte, Rachel A and Diekhans, Mark and Long, Jeffrey C and Wilder, Steven P and Zweig, Ann S and Karolchik, Donna and Kuhn, Robert M and Haussler, David and Kent, W. James
Nucleic Acids Research, ISSN 0305-1048, 01/2013, Volume 41, Issue 1, pp. D56 - D63
The Encyclopedia of DNA Elements (ENCODE), http://encodeproject.org, has completed its fifth year of scientific collaboration to create a comprehensive catalog... 
CHROMATIN-STRUCTURE | BIOCHEMISTRY & MOLECULAR BIOLOGY | DISCOVERY | CHIP-SEQ EXPERIMENTS | TRANSCRIPTION | Animals | Genomics | Humans | Databases, Genetic | Mice | Software | Internet | Genome, Human
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3. Full Text An integrated encyclopedia of DNA elements in the human genome
by Dunham, Ian and Kundaje, Anshul and Aldred, Shelley F and Collins, Patrick J and Davis, Carrie A and Doyle, Francis and Epstein, Charles B and Frietze, Seth and Harrow, Jennifer and Kaul, Rajinder and Khatun, Jainab and Lajoie, Bryan R and Landt, Stephen G and Lee, Bum-Kyu and Pauli, Florencia and Rosenbloom, Kate R and Sabo, Peter and Safi, Alexias and Sanyal, Amartya and Shoresh, Noam and Simon, Jeremy M and Song, Lingyun and Trinklein, Nathan D and Altshuler, Robert C and Birney, Ewan and Brown, James B and Cheng, Chao and Djebali, Sarah and Dong, Xianjun and Ernst, Jason and Furey, Terrence S and Gerstein, Mark and Giardine, Belinda and Greven, Melissa and Hardison, Ross C and Harris, Robert S and Herrero, Javier and Hoffman, Michael M and Iyer, Sowmya and Kellis, Manolis and Kheradpour, Pouya and Lassmann, Timo and Li, Qunhua and Lin, Xinying and Marinov, Georgi K and Merkel, Angelika and Mortazavi, Ali and Parker, Stephen C. J and Reddy, Timothy E and Rozowsky, Joel and Schlesinger, Felix and Thurman, Robert E and Wang, Jie and Ward, Lucas D and Whitfield, Troy W and Wilder, Steven P and Wu, Weisheng and Xi, Hualin S and Yip, Kevin Y and Zhuang, Jiali and Bernstein, Bradley E and Green, Eric D and Gunter, Chris and Snyder, Michael and Pazin, Michael J and Lowdon, Rebecca F and Dillon, Laura A. L and Adams, Leslie B and Kelly, Caroline J and Zhang, Julia and Wexler, Judith R and Good, Peter J and Feingold, Elise A and Crawford, Gregory E and Dekker, Job and Elnitski, Laura and Farnham, Peggy J and Giddings, Morgan C and Gingeras, Thomas R and Guigó, Roderic and Hubbard, Timothy J and Kent, W. James and Lieb, Jason D and Margulies, Elliott H and Myers, Richard M and Stamatoyannopoulos, John A and Tenenbaum, Scott A and Weng, Zhiping and White, Kevin P and Wold, Barbara and Yu, Yanbao and Wrobel, John and Risk, Brian A and Gunawardena, Harsha P and Kuiper, Heather C and Maier, Christopher W and Xie, Ling and Chen, Xian and Mikkelsen, Tarjei S and Gillespie, Shawn and ... and ENCODE Project Consortium and The ENCODE Project Consortium
Nature, ISSN 0028-0836, 09/2012, Volume 489, Issue 7414, pp. 57 - 74
The human genome encodes the blueprint of life, but the function of the vast majority of its nearly three billion bases is unknown. The Encyclopedia of DNA... 
TRANSCRIPTION FACTOR-BINDING | CHROMATIN | MAPS | DETERMINANTS | HUMAN-CELLS | MULTIDISCIPLINARY SCIENCES | IN-VIVO | REGIONS | MOUSE | WIDE | CHROMOSOME CONFORMATION CAPTURE | Mammals - genetics | Chromatin - metabolism | Histones - chemistry | Genomics | Humans | Promoter Regions, Genetic - genetics | Encyclopedias as Topic | DNA-Binding Proteins - metabolism | Chromatin Immunoprecipitation | Neoplasms - genetics | Genetic Predisposition to Disease - genetics | Genome-Wide Association Study | Chromosomes, Human - genetics | Molecular Sequence Annotation | Exons - genetics | DNA Methylation - genetics | Binding Sites - genetics | Chromosomes, Human - metabolism | Genome, Human - genetics | Regulatory Sequences, Nucleic Acid - genetics | DNA - genetics | DNA Footprinting | Proteins - genetics | Transcription Factors - metabolism | Deoxyribonuclease I - metabolism | Animals | Sequence Analysis, RNA | Alleles | Polymorphism, Single Nucleotide - genetics | Genetic Variation - genetics | Histones - metabolism | Transcription, Genetic - genetics | Chromatin - genetics | Genetic research | Genetic transcription | Research | Human genome | Proteins | Studies | Genes | DNA methylation | Genetics | Deoxyribonucleic acid--DNA | Genètica | Genòmica | Genoma humà | Life Sciences
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4. Full Text An encyclopedia of mouse DNA elements (Mouse ENCODE)
by Stamatoyannopoulos, John A and Snyder, Michael and Hardison, Ross and Ren, Bing and Gingeras, Thomas and Gilbert, David M and Groudine, Mark and Bender, Michael and Kaul, Rajinder and Canfield, Theresa and Giste, Erica and Johnson, Audra and Zhang, Mia and Balasundaram, Gayathri and Byron, Rachel and Roach, Vaughan and Sabo, Peter J and Sandstrom, Richard and Stehling, A Sandra and Thurman, Robert E and Weissman, Sherman M and Cayting, Philip and Hariharan, Manoj and Lian, Jin and Cheng, Yong and Landt, Stephen G and Ma, Zhihai and Wold, Barbara J and Dekker, Job and Crawford, Gregory E and Keller, Cheryl A and Wu, Weisheng and Morrissey, Christopher and Kumar, Swathi A and Mishra, Tejaswini and Jain, Deepti and Byrska-Bishop, Marta and Blankenberg, Daniel and Lajoiel, Bryan R and Jain, Gaurav and Sanyal, Amartya and Chen, Kaun-Bei and Denas, Olgert and Taylor, James and Blobel, Gerd A and Weiss, Mitchell J and Pimkin, Max and Deng, Wulan and Marinov, Georgi K and Williams, Brian A and Fisher-Aylor, Katherine I and Desalvo, Gilberto and Kiralusha, Anthony and Trout, Diane and Amrhein, Henry and Mortazavi, Ali and Edsall, Lee and McCleary, David and Kuan, Samantha and Shen, Yin and Yue, Feng and Ye, Zhen and Davis, Carrie A and Zaleski, Chris and Jha, Sonali and Xue, Chenghai and Dobin, Alex and Lin, Wei and Fastuca, Meagan and Wang, Huaien and Guigo, Roderic and Djebali, Sarah and Lagarde, Julien and Ryba, Tyrone and Sasaki, Takayo and Malladi, Venkat S and Cline, Melissa S and Kirkup, Vanessa M and Learned, Katrina and Rosenbloom, Kate R and Kent, W James and Feingold, Elise A and Good, Peter J and Pazin, Michael and Lowdon, Rebecca F and Adams, Leslie B and Mouse ENCODE Consortium
Genome Biology, ISSN 1474-7596, 08/2012, Volume 13, Issue 8, pp. 418 - 418
To complement the human Encyclopedia of DNA Elements (ENCODE) project and to enable a broad range of mouse genomics efforts, the Mouse ENCODE Consortium is... 
Rna-seq | Transcriptome | Comparative genomics | Encode project | Mouse genome | Chip-seq | Histone modifications | Transcription factor binding sites | Dnasei hypersensitive sites | transcription factor binding sites | HUMAN-DISEASE | transcriptome | ENCODE Project | histone modifications | mouse genome | comparative genomics | DNasel hypersensitive sites | RNA-seq | MODELS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | ChIP-seq | Mice - genetics | Animals | Genomics | Humans | Molecular Sequence Annotation | Internet | Genome | Genome, Human | Databases, Nucleic Acid | Ratolins (Animals de laboratori) | Genòmica | DNaseI hypersensitive sites | Open Letter
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5. Full Text ENCODE whole-genome data in the UCSC Genome Browser: update 2012
by Rosenbloom, Kate R and Dreszer, Timothy R and Long, Jeffrey C and Malladi, Venkat S and Sloan, Cricket A and Raney, Brian J and Cline, Melissa S and Karolchik, Donna and Barber, Galt P and Clawson, Hiram and Diekhans, Mark and Fujita, Pauline A and Goldman, Mary and Gravell, Robert C and Harte, Rachel A and Hinrichs, Angie S and Kirkup, Vanessa M and Kuhn, Robert M and Learned, Katrina and Maddren, Morgan and Meyer, Laurence R and Pohl, Andy and Rhead, Brooke and Wong, Matthew C and Zweig, Ann S and Haussler, David and Kent, W. James
Nucleic Acids Research, ISSN 0305-1048, 1/2012, Volume 40, Issue D1, pp. D912 - D917
The Encyclopedia of DNA Elements (ENCODE) Consortium is entering its 5th year of production-level effort generating high-quality whole-genome functional... 
ELEMENTS | PROJECT | BIOCHEMISTRY & MOLECULAR BIOLOGY | Mice - genetics | Animals | Humans | Molecular Sequence Annotation | Software | Internet | Genome | Genome, Human | Databases, Nucleic Acid
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6. Full Text ENCODE whole-genome data in the UCSC Genome Browser
by Rosenbloom, Kate R and Dreszer, Timothy R and Pheasant, Michael and Barber, Galt P and Meyer, Laurence R and Pohl, Andy and Raney, Brian J and Wang, Ting and Hinrichs, Angie S and Zweig, Ann S and Fujita, Pauline A and Learned, Katrina and Rhead, Brooke and Smith, Kayla E and Kuhn, Robert M and Karolchik, Donna and Haussler, David and Kent, W. James
Nucleic Acids Research, ISSN 0305-1048, 11/2009, Volume 38, Issue 1, pp. D620 - D625
The Encyclopedia of DNA Elements (ENCODE) project is an international consortium of investigators funded to analyze the human genome with the goal of producing... 
ELEMENTS | PROJECT | BIOCHEMISTRY & MOLECULAR BIOLOGY | Computational Biology - methods | Information Storage and Retrieval - methods | Genomics | Humans | Computational Biology - trends | Databases, Genetic | Sequence Alignment | Animals | Cell Line, Tumor | Mice | Software | Internet | Genome, Human | Databases, Nucleic Acid
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