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1. Full Text Let-7 Expression Defines Two Differentiation Stages of Cancer
by Scott Shell and Sun-Mi Park and Amir Reza Radjabi and Robert Schickel and Emily O. Kistner and David A. Jewell and Christine Feig and Ernst Lengyel and Marcus E. Peter
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 7/2007, Volume 104, Issue 27, pp. 11400 - 11405
The early phases of carcinogenesis resemble embryonic development, often involving the reexpression of embryonic mesenchymal genes. The NCI60 panel of human... 
Tumor cell line | Hep G2 cells | MicroRNA | RNA | Epithelial cells | Cell lines | HeLa cells | Embryonic cells | Tumors | Cancer | HMGA2 | miRNA | Tumor progression | Ovarian cancer | Supercluster | TRANSFORMATION | ovarian cancer | MULTIDISCIPLINARY SCIENCES | CELL LINES | supercluster | OVARIAN-CANCER | MALIGNANT PHENOTYPE | TUMORS | TRANSITION | tumor progression | MAMMALIAN MICRORNAS | GENE-EXPRESSION | CARCINOMAS | Cell Line | Predictive Value of Tests | HMGA2 Protein - biosynthesis | Humans | Gene Expression Regulation, Neoplastic | Ovarian Neoplasms - pathology | MicroRNAs - biosynthesis | Biomarkers, Tumor - physiology | Disease Progression | Ovarian Neoplasms - genetics | Cell Differentiation - genetics | Cell Transformation, Neoplastic - genetics | HMGA2 Protein - genetics | Cell Line, Tumor | Female | Biomarkers, Tumor - genetics | MicroRNAs - genetics | HeLa Cells | MicroRNAs - physiology | Cell Transformation, Neoplastic - pathology | Biomarkers, Tumor - biosynthesis | Noncoding DNA | Research | Gene expression | Cell differentiation | Carcinogenesis | Ribonucleic acid--RNA | Embryos | Cells | Index Medicus | Biological Sciences
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2. Full Text A Genome-Wide Association Study Identifies IL23R as an Inflammatory Bowel Disease Gene
by Richard H. Duerr and Kent D. Taylor and Steven R. Brant and John D. Rioux and Mark S. Silverberg and Mark J. Daly and A. Hillary Steinhart and Clara Abraham and Miguel Regueiro and Anne Griffiths and Themistocles Dassopoulos and Alain Bitton and Huiying Yang and Stephan Targan and Lisa Wu Datta and Emily O. Kistner and L. Philip Schumm and Annette T. Lee and Peter K. Gregersen and M. Michael Barmada and Jerome I. Rotter and Dan L. Nicolae and Judy H. Cho
Science, ISSN 0036-8075, 12/2006, Volume 314, Issue 5804, pp. 1461 - 1463
The inflammatory bowel diseases Crohn's disease and ulcerative colitis are common, chronic disorders that cause abdominal pain, diarrhea, and gastrointestinal... 
Crohn disease | Inflammatory bowel diseases | Receptors | Introns | Genes | Medical genetics | Alleles | P values | Reports | Chromosomes | Human genetics | AUTOIMMUNE INFLAMMATION | INTERLEUKIN-17 | MULTIDISCIPLINARY SCIENCES | SUSCEPTIBILITY | CYTOKINE | ACTIVE CROHNS-DISEASE | IL-23 | IL-12 | EXPRESSION | T-CELLS | SUBUNIT | Haplotypes | Crohn Disease - genetics | Genetic Predisposition to Disease | Receptors, Interleukin - physiology | Genetic Testing | Signal Transduction | Humans | Colitis, Ulcerative - genetics | Genetic Markers | Receptors, Interleukin - genetics | Case-Control Studies | Jews - genetics | Linkage Disequilibrium | Interleukin-23 - metabolism | Polymorphism, Single Nucleotide | Chromosomes, Human, Pair 1 - genetics | Genome, Human | Cohort Studies | Crohn's disease | Research | Comparative analysis | Ulcerative colitis | Inflammatory bowel disease | Cytokines | Genomics | Crohns disease | Index Medicus
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3. Full Text Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease
by Fisher, Sheila A and Regueiro, Miguel D and Anderson, Carl A and Prescott, Natalie J and Mathew, Christopher G and Rutgeerts, Paul and Parkes, Miles and Steinhart, A Hillary and Drummond, Hazel and Bitton, Alain and Georges, Michel and Gut, Ivo and Jewell, Derek and Barrett, Jeffrey C and Daly, Mark J and Dewit, Olivier and Bumpstead, Suzannah and Hansoul, Sarah and Hugot, Jean-Pierre and Barmada, M Michael and Xavier, Ramnik J and Libioulle, Cécile and Tremelling, Mark and Laukens, Debby and Datta, Lisa Wu and Kistner, Emily O and Onnie, Clive M and Griffiths, Anne M and Franchimont, Denis and Lathrop, Mark and Nimmo, Elaine and Green, Todd and Mansfield, John and Zelenika, Diana and Deloukas, Panos and Taylor, Kent D and Ahmad, Tariq and de Vos, Martine and Van Gossum, André and Duerr, Richard H and Silverberg, Mark S and Nicolae, Dan L and Rotter, Jerome I and Schumm, L Philip and Cardon, Lon R and Ghori, Jilur and Heath, Simon and Dassopoulos, Themistocles and Vermeire, Severine and Sandor, Cynthia and Satsangi, Jack and Marchini, Jonathan and Gwilliam, Rhian and Louis, Edouard and Rioux, John D and Mni, Myriam and Belaiche, Jacques and Targan, Stephan R and Brant, Steven R and Murtha, Michael T and Cho, Judy H and Wellcome Trust Case Control and NIDDK IBD Genetics Consortium and Belgian-French IBD Consortium and Wellcome Trust Case Control Consortium and the NIDDK IBD Genetics Consortium and the Belgian-French IBD Consortium and the Wellcome Trust Case Control Consortium
Nature Genetics, ISSN 1061-4036, 08/2008, Volume 40, Issue 8, pp. 955 - 962
Several risk factors for Crohn's disease have been identified in recent genome-wide association studies. To advance gene discovery further, we combined data... 
GENETIC-VARIATION | CELLS | VARIANTS | COLITIS | GENETICS & HEREDITY | RISK | LARGE-SCALE | NONSYNONYMOUS SNPS | IL-23 | EXPRESSION | MULTIPLE | Crohn Disease - genetics | Genetic Predisposition to Disease | Genome, Human | Quantitative Trait Loci | Humans | Physiological aspects | Crohn's disease | Genetic aspects | Research | Genetic susceptibility | Risk factors | Inflammatory bowel disease | Studies | Medical research | Genetics | Genomics | Crohns disease | Index Medicus
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4. Full Text Loss of E-cadherin promotes ovarian cancer metastasis via α5-integrin, which is a therapeutic target
by Sawada, Kenjiro and Mitra, Anirban K and Radjabi, A. Reza and Bhaskar, Vinay and Kistner, Emily O and Tretiakova, Maria and Jagadeeswaran, Sujatha and Montag, Anthony and Becker, Amy and Kenny, Hilary A and Peter, Marcus E and Ramakrishnan, Vanitha and Yamada, S. Diane and Lengyel, Ernst
Cancer Research, ISSN 0008-5472, 04/2008, Volume 68, Issue 7, pp. 2329 - 2339
E-cadherin loss is frequently associated with ovarian cancer metastasis. Given that adhesion to the abdominal peritoneum is the first step in ovarian cancer... 
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5. Full Text SCAN: SNP and copy number annotation
by Gamazon, Eric R and Zhang, Wei and Konkashbaev, Anuar and Duan, Shiwei and Kistner, Emily O and Nicolae, Dan L and Dolan, M. Eileen and Cox, Nancy J
Bioinformatics, ISSN 1367-4803, 1/2010, Volume 26, Issue 2, pp. 259 - 262
Motivation: Genome-wide association studies (GWAS) generate relationships between hundreds of thousands of single nucleotide polymorphisms (SNPs) and complex... 
DATABASE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | HUMAN GENE-EXPRESSION | ASSOCIATION | GENOME | Gene Dosage - genetics | Computational Biology - methods | Genome-Wide Association Study | Databases, Genetic | Polymorphism, Single Nucleotide | Software | Quantitative Trait Loci | Linkage Disequilibrium | Index Medicus | Original Papers
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6. Full Text Identification of Genetic Variants Contributing to Cisplatin-Induced Cytotoxicity by Use of a Genomewide Approach
by Huang, R. Stephanie and Duan, Shiwei and Shukla, Sunita J and Kistner, Emily O and Clark, Tyson A and Chen, Tina X and Schweitzer, Anthony C and Blume, John E and Dolan, M. Eileen
The American Journal of Human Genetics, ISSN 0002-9297, 2007, Volume 81, Issue 3, pp. 427 - 437
Cisplatin, a platinating agent commonly used to treat several cancers, is associated with nephrotoxicity, neurotoxicity, and ototoxicity, which has hindered... 
CENTROSOME SEPARATION | INHIBITION | DNA | GENETICS & HEREDITY | NEK2A | TOXICITY | POLYMORPHISM | CANCER | CHEMOTHERAPY | DAMAGE | Cell Line | European Continental Ancestry Group - genetics | Gene Expression | Oligonucleotide Array Sequence Analysis | Humans | Genotype | Antineoplastic Agents - toxicity | Cisplatin - toxicity | Inhibitory Concentration 50 | Polymorphism, Single Nucleotide | African Continental Ancestry Group - genetics | Genome, Human | Quantitative Trait Loci | Research | Genetic variation | Health aspects | Cisplatin | Drugs | Genetic research | Genotype & phenotype | Chemotherapy | Toxicity | Genomics | Index Medicus
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7. Full Text A Genome-Wide Approach to Identify Genetic Variants That Contribute to Etoposide-Induced Cytotoxicity
by R. Stephanie Huang and Shiwei Duan and Wasim K. Bleibel and Emily O. Kistner and Wei Zhang and Tyson A. Clark and Tina X. Chen and Anthony C. Schweitzer and John E. Blume and Nancy J. Cox and M. Eileen Dolan
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 6/2007, Volume 104, Issue 23, pp. 9758 - 9763
Large interindividual variance has been observed in sensitivity to drugs. To comprehensively decipher the genetic contribution to these variations in drug... 
Exons | Genes | Cell lines | Medical genetics | Cytotoxicity | Gene expression | Population genetics | Chromosomes | Genotypes | Human genetics | HapMap | Whole-genome association | Toxicity | Pharmacogenomics | toxicity | MULTIDISCIPLINARY SCIENCES | SENSITIVITY | TUMOR-CELLS | CANCER | CHEMOTHERAPY | ONTO-EXPRESS | pharmacogenomics | INTERLEUKIN-1-ALPHA | whole-genome association | MELANOMA-CELLS | UP-REGULATION | ASSOCIATION | ACUTE PROMYELOCYTIC LEUKEMIA | Cell Line | Oncogenes - genetics | Pharmacogenetics - methods | Etoposide - toxicity | European Continental Ancestry Group - genetics | Oxazines | Oligonucleotide Array Sequence Analysis | Humans | Linear Models | Antineoplastic Agents, Phytogenic - toxicity | Gene Expression Regulation - drug effects | Genetic Variation | Xanthenes | Inhibitory Concentration 50 | Polymorphism, Single Nucleotide - genetics | Cell Proliferation - drug effects | African Continental Ancestry Group - genetics | Complications and side effects | Pharmacogenetics | Genetic variation | Etoposide | Genetic aspects | Genomes | Models | Research | Drugs | Genotype & phenotype | Genomics | Cells | Index Medicus | Biological Sciences
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8. Full Text Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study
by Taylor, Kent D and Barmada, M Michael and Roeder, Kathryn and Abraham, Clara and Steinhart, A Hillary and Lee, Annette T and Schumm, L Philip and Klei, Lambertus and Rioux, John D and Duerr, Richard H and Bayless, Theodore M and Xu, Wei and Latiano, Anna and Silverberg, Mark S and Paré, Pierre and Goyette, Philippe and Ippoliti, Andrew F and Lahaie, Raymond G and Wu, Jing and Brant, Steven R and Kistner, Emily O and Griffiths, Anne M and Targan, Stephan R and Scott, Regan and Bossa, Fabrizio and Daly, Mark J and Proctor, Deborah D and Rotter, Jerome I and Gregersen, Peter K and Cho, Judy H and McGovern, Dermot P B and Regueiro, Miguel D and Annese, Vito and Achkar, Jean-Paul
Nature Genetics, ISSN 1061-4036, 02/2009, Volume 41, Issue 2, pp. 216 - 220
Ulcerative colitis is a chronic inflammatory disease of the colon that presents as diarrhea and gastrointestinal bleeding. We performed a genome-wide... 
PATHOGENESIS | CONTRIBUTE | INFLAMMATORY-BOWEL-DISEASE | REPLICATION | CROHNS-DISEASE | GENE | GENETICS & HEREDITY | SUSCEPTIBILITY LOCI | SEQUENCE VARIANTS | EXPRESSION | MULTIPLE | Genetic Predisposition to Disease | Genome-Wide Association Study | Humans | Risk Factors | Colitis, Ulcerative - genetics | Butyrophilins | Genotype | Male | Chromosomes, Human, Pair 6 | Receptors, Interleukin - genetics | Case-Control Studies | Membrane Glycoproteins - genetics | Chromosomes, Human, Pair 1 | HLA-DQ Antigens - genetics | Recombination, Genetic | Female | Polymorphism, Single Nucleotide | Chromosomes, Human, Pair 12 | HLA-DQ beta-Chains | Genetic aspects | Research | Single nucleotide polymorphisms | Gene expression | Risk factors | Ulcerative colitis | Inflammatory bowel disease | Genetics | Kidney diseases | Chromosomes | Bowel disease | Quality control | Index Medicus
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9. Full Text Evaluation of Genetic Variation Contributing to Differences in Gene Expression between Populations
by Zhang, Wei and Duan, Shiwei and Kistner, Emily O and Bleibel, Wasim K and Huang, R. Stephanie and Clark, Tyson A and Chen, Tina X and Schweitzer, Anthony C and Blume, John E and Cox, Nancy J and Dolan, M. Eileen
The American Journal of Human Genetics, ISSN 0002-9297, 2008, Volume 82, Issue 3, pp. 631 - 640
Gene expression is a complex quantitative trait partially regulated by genetic variation in DNA sequence. Population differences in gene expression could... 
ETHNIC-DIFFERENCES | DESIGN | HUMAN GENOME | GENETICS & HEREDITY | ONTO-TOOLS | CLUSTER | ASSOCIATION | Genetic Variation | Gene Expression | Polymorphism, Single Nucleotide | Population - genetics | Chromosomes, Human - genetics | Humans | Separation | Research | Single nucleotide polymorphisms | Nucleic acids | Nucleotide sequence | Analysis | Biological variation | Gene expression | Correlation analysis | Population genetics | Genomics | Index Medicus
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10. Full Text Common variants at five new loci associated with early-onset inflammatory bowel disease
by Hakonarson, Hakon and Zhang, Haitao and Grand, Richard and Hou, Cuiping and Silverberg, Mark S and Muise, Aleixo and Stephens, Michael and Annese, Vito and Grundmeier, Robert and Russell, Richard K and Lee, Jessica and Daly, Mark and Griffiths, Anne and Heyman, Melvin B and Latiano, Anna and Kirschner, Barbara and Imielinski, Marcin and Baldassano, Robert N and Cucchiara, Salvatore and Grant, Struan F A and Flory, James H and Monos, Dimitri S and Saeed, Shehzad and Chiavacci, Rosetta M and Bradfield, Jonathan P and Dallapiccola, Bruno and Denson, Lee and Taylor, Kent and McGovern, Dermot and Dubinsky, Marla and Levine, Arie and Castro, Massimo and Abrams, Debra J and Kugathasan, Subra and Otieno, George and Walters, Thomas D and Frackelton, Edward C and Sleiman, Patrick and Van Limbergen, Johan and Wilson, David C and Essers, Jonah and Glessner, Joseph T and Stempak, Joanne and Guthery, Stephen L and Satsangi, Jack and Ferry, George D and Piccoli, David and Wang, Kai and Kim, Cecilia E and Western Reg Res Alliance Pediat IB and Int IBD Genetics Consortium and Western Regional Alliance for Pediatric IBD and International IBD Genetics Consortium and NIDDK IBD Genetics Consortium and Belgian-French IBD Consortium and Wellcome Trust Case Control Consortium and Western Regional Research Alliance for Pediatric IBD
Nature Genetics, ISSN 1061-4036, 12/2009, Volume 41, Issue 12, pp. 1335 - 1340
The inflammatory bowel diseases (IBD) Crohn's disease and ulcerative colitis are common causes of morbidity in children and young adults in the western world.... 
CONTRIBUTE | CROHNS-DISEASE | GENE | GENETICS & HEREDITY | SUSCEPTIBILITY LOCI | SEQUENCE VARIANTS | AUTOPHAGY | EXPRESSION | MULTIPLE | GENOME-WIDE ASSOCIATION | HISTORY | Genetic Variation | Genome-Wide Association Study | Inflammatory Bowel Diseases - epidemiology | Humans | Age of Onset | Colitis, Ulcerative - genetics | Inflammatory Bowel Diseases - genetics | Chromosome Mapping | Genome, Human | Quantitative trait loci | Inflammatory bowel diseases | Genetic aspects | Research | Genetic variation | Risk factors | Studies | Inflammatory bowel disease | Medical research | Nutrition research | Hospitals | Bowel disease | Meta-analysis | Index Medicus
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11. Full Text Interaction of prenatal exposure to cigarettes and MAOA genotype in pathways to youth antisocial behavior
by Wakschlag, L.S and Kistner, E.O and Pine, D.S and Biesecker, G and Pickett, K.E and Skol, A.D and Dukic, V and Blair, R.J.R and Leventhal, B.L and Cox, N.J and Burns, J.L and Kasza, K.E and Wright, R.J and Cook Jr, E.H
Molecular Psychiatry, ISSN 1359-4184, 09/2010, Volume 15, Issue 9, pp. 928 - 937
Genetic susceptibility to antisocial behavior may increase fetal sensitivity to prenatal exposure to cigarette smoke. Testing putative gene x exposure... 
prenatal smoking | developmental psychopathology | MAOA | gene + environment interaction | MONOAMINE-OXIDASE | FUNCTIONAL POLYMORPHISM | PSYCHIATRY | DEFICIT HYPERACTIVITY DISORDER | BIOCHEMISTRY & MOLECULAR BIOLOGY | LUNG-FUNCTION | NEUROSCIENCES | DOPAMINE TRANSPORTER GENOTYPE | GENE-ENVIRONMENT INTERACTION | INDIVIDUAL-DIFFERENCES | gene x environment interaction | EXTERNALIZING PROBLEMS | MATERNAL SMOKING | Smoking - adverse effects | Social Behavior Disorders - genetics | Follow-Up Studies | Prenatal Exposure Delayed Effects - epidemiology | Humans | Risk Factors | Genotype | Male | Smoking - genetics | Monoamine Oxidase - genetics | Pregnancy | Prenatal Exposure Delayed Effects - genetics | Young Adult | Phenotype | Social Behavior Disorders - epidemiology | Smoking - epidemiology | Adolescent | Sex Distribution | Adult | Environment | Female | Adolescent Behavior - physiology | Genetic Predisposition to Disease - epidemiology | Antisocial behavior | Monoamine oxidase | Smoking and youth | Physiological aspects | Genetic aspects | Research | Health aspects | Risk factors | Index Medicus | gene × environment interaction
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