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BIOINFORMATICS, ISSN 1367-4803, 07/2019, Volume 35, Issue 14, pp. I360 - I369
The information criterion of minimum message length (MML) provides a powerful statistical framework for inductive reasoning from observed data. We apply MML to... 
IMPROVEMENTS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | INFORMATION | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY
Journal Article
Bioinformatics, ISSN 1367-4803, 06/2012, Volume 28, Issue 12, pp. i97 - i105
Journal Article
Bioinformatics, ISSN 1367-4803, 04/2017, Volume 33, Issue 7, pp. 1005 - 1013
Motivation: Structural molecular biology depends crucially on computational techniques that compare protein three-dimensional structures and generate... 
CLASSIFICATION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | SEQUENCE | ALGORITHM | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Reproducibility of Results | Sequence Alignment | Algorithms | Bayes Theorem | Software | Models, Statistical | Proteins - chemistry | Data Compression | Index Medicus
Journal Article
Methods in molecular biology (Clifton, N.J.), 2013, Volume 932, pp. 51 - 59
We have developed a concise tableau representation of protein folding patterns, based on the order and contact patterns of elements of secondary structure:... 
Models, Molecular | Software | Algorithms | Proteins - chemistry | Protein Structure, Secondary | Protein Folding | Index Medicus
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 03/2012, Volume 40, Issue 6, pp. e44 - e44
Journal Article
Bioinformatics, ISSN 1367-4803, 09/2014, Volume 30, Issue 17, pp. i512 - i518
Journal Article
Methods in Molecular Biology, ISSN 1064-3745, 2013, Volume 932, pp. 51 - 59
Conference Proceeding
Methods in molecular biology (Clifton, N.J.), 2019, Volume 1958, pp. 123 - 131
We recently developed an unsupervised Bayesian inference methodology to automatically infer a dictionary of protein supersecondary structures (Subramanian et... 
Journal Article
Bioinformatics, ISSN 1367-4803, 3/2008, Volume 24, Issue 5, pp. 645 - 651
Journal Article
BMC Bioinformatics, ISSN 1471-2105, 01/2010, Volume 11, Issue 1, pp. S46 - S46
Background: Protein structure comparison is a fundamental task in structural biology. While the number of known protein structures has grown rapidly over the... 
SECONDARY-STRUCTURE | ALTERNATIVE ALIGNMENTS | SEARCH | ALGORITHM | BIOCHEMICAL RESEARCH METHODS | REPRESENTATION | FOLDING PATTERNS | DATABASE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | MATHEMATICAL & COMPUTATIONAL BIOLOGY | SIMILARITY | WEB SERVER | TOOL | Models, Molecular | Algorithms | Proteins - chemistry | Databases, Protein | Protein Folding | Index Medicus
Journal Article
BMC Systems Biology, ISSN 1752-0509, 08/2008, Volume 2, Issue 1, pp. 73 - 73
Background: Inventories of small subgraphs in biological networks have identified commonly-recurring patterns, called motifs. The inference that these motifs... 
TIME | ESCHERICHIA-COLI | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Signal Transduction | Escherichia coli - genetics | Saccharomyces cerevisiae - genetics | Neurons - cytology | Neurons - metabolism | Gene Regulatory Networks | Hippocampus - cytology | Proteins | Physiological aspects | Research | Neural networks | Conformation | Index Medicus
Journal Article
Proteins: Structure, Function, and Bioinformatics, ISSN 0887-3585, 11/2008, Volume 73, Issue 2, pp. 320 - 324
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 07/2012, Volume 40, Issue 1, pp. W334 - W339
Searching for well-fitting 3D oligopeptide fragments within a large collection of protein structures is an important task central to many analyses involving... 
ROTATION | 3D STRUCTURAL SUPERPOSITION | RELATE 2 SETS | VECTORS | BIOCHEMISTRY & MOLECULAR BIOLOGY | User-Computer Interface | Peptide Fragments - chemistry | Algorithms | Databases, Protein | Software | Internet | Oligopeptides - chemistry | Index Medicus
Journal Article
Bioinformatics, ISSN 1367-4803, 06/2010, Volume 26, Issue 17, pp. 2076 - 2084
Motivation: Identification of functionally equivalent genes in different species is essential to understand the evolution of biological pathways and processes.... 
MOUSE | BIOCHEMICAL RESEARCH METHODS | IDENTIFICATION | ALIGNMENT TOOL | REARRANGEMENT | SYNTENY | CONSERVATION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | SEQUENCE | MATHEMATICAL & COMPUTATIONAL BIOLOGY | DUPLICATION | PROTEINS | MAMMALIAN EVOLUTION | Algorithms | Animals | Comparative Genomic Hybridization | Chromosome Mapping - methods | Humans | Synteny | Conserved Sequence | Mice | Software | Index Medicus
Journal Article